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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 706 |
| AccB1I | GGYRCC | 1 cut(s) | 13 |
| AccBSI | CCGCTC | 3 cut(s) | 76, 391, 720 |
| AccII | CGCG | 7 cut(s) | 47, 136, 347, 357, 512, 707, 885 |
| AclWI | GGATC | 1 cut(s) | 137 |
| AcoI | YGGCCR | 1 cut(s) | 513 |
| AcuI | CTGAAG | 3 cut(s) | 254, 629, 927 |
| AcvI | CACGTG | 1 cut(s) | 797 |
| AcyI | GRCGYC | 3 cut(s) | 14, 319, 351 |
| AfaI | GTAC | 2 cut(s) | 551, 696 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 385, 489, 490, 686, 710, 755 |
| AflIII | ACRYGT | 1 cut(s) | 204 |
| AgeI | ACCGGT | 1 cut(s) | 153 |
| AgsI | TTSAA | 2 cut(s) | 497, 535 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 177, 849 |
| AjnI | CCWGG | 1 cut(s) | 807 |
| AluBI | AGCT | 7 cut(s) | 168, 247, 280, 301, 364, 415, 822 |
| AluI | AGCT | 7 cut(s) | 168, 247, 280, 301, 364, 415, 822 |
| Alw21I | GWGCWC | 1 cut(s) | 249 |
| Alw26I | GTCTC | 2 cut(s) | 765, 836 |
| AlwI | GGATC | 1 cut(s) | 137 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 232 |
| Ama87I | CYCGRG | 1 cut(s) | 861 |
| AoxI | GGCC | 4 cut(s) | 118, 513, 558, 585 |
| ApaI | GGGCCC | 1 cut(s) | 589 |
| ApeKI | GCWGC | 4 cut(s) | 196, 226, 382, 427 |
| AsiGI | ACCGGT | 1 cut(s) | 153 |
| AspLEI | GCGC | 6 cut(s) | 16, 138, 623, 743, 817, 887 |
| AspS9I | GGNCC | 3 cut(s) | 559, 585, 586 |
| AsuC2I | CCSGG | 1 cut(s) | 749 |
| AsuHPI | GGTGA | 3 cut(s) | 83, 469, 586 |
| AvaI | CYCGRG | 1 cut(s) | 861 |
| AxyI | CCTNAGG | 1 cut(s) | 488 |
| BaeGI | GKGCMC | 2 cut(s) | 589, 676 |
| BanI | GGYRCC | 1 cut(s) | 13 |
| BanII | GRGCYC | 2 cut(s) | 249, 589 |
| BbrPI | CACGTG | 1 cut(s) | 797 |
| BbsI | GAAGAC | 1 cut(s) | 260 |
| Bbv12I | GWGCWC | 1 cut(s) | 249 |
| BbvI | GCAGC | 4 cut(s) | 183, 238, 369, 439 |
| BccI | CCATC | 1 cut(s) | 62 |
| BceAI | ACGGC | 3 cut(s) | 159, 332, 847 |
| BciT130I | CCWGG | 1 cut(s) | 809 |
| BcnI | CCSGG | 1 cut(s) | 749 |
| BcoDI | GTCTC | 2 cut(s) | 765, 836 |
| BfaI | CTAG | 2 cut(s) | 122, 590 |
| BfmI | CTRYAG | 2 cut(s) | 163, 383 |
| BfoI | RGCGCY | 2 cut(s) | 17, 624 |
| BfuAI | ACCTGC | 1 cut(s) | 706 |
| Bme1390I | CCNGG | 2 cut(s) | 749, 809 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 177, 849 |
| BmeT110I | CYCGRG | 1 cut(s) | 861 |
| BmgT120I | GGNCC | 3 cut(s) | 559, 585, 586 |
| BmiI | GGNNCC | 3 cut(s) | 15, 586, 587 |
| BmrFI | CCNGG | 2 cut(s) | 749, 809 |
| BmsI | GCATC | 2 cut(s) | 650, 907 |
| BpiI | GAAGAC | 1 cut(s) | 260 |
| BpmI | CTGGAG | 1 cut(s) | 488 |
| Bpu10I | CCTNAGC | 3 cut(s) | 248, 402, 721 |
| BpuMI | CCSGG | 1 cut(s) | 749 |
| BsaAI | YACGTR | 1 cut(s) | 797 |
| BsaHI | GRCGYC | 3 cut(s) | 14, 319, 351 |
| BsaI | GGTCTC | 2 cut(s) | 765, 836 |
| BsaJI | CCNNGG | 7 cut(s) | 141, 345, 355, 510, 705, 862, 921 |
| BsaWI | WCCGGW | 2 cut(s) | 153, 679 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 385, 489, 490, 686, 710, 755 |
| Bse118I | RCCGGY | 2 cut(s) | 153, 661 |
| Bse1I | ACTGG | 1 cut(s) | 24 |
| Bse21I | CCTNAGG | 1 cut(s) | 488 |
| BseBI | CCWGG | 1 cut(s) | 809 |
| BseDI | CCNNGG | 7 cut(s) | 141, 345, 355, 510, 705, 862, 921 |
| BseGI | GGATG | 1 cut(s) | 73 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 385, 489, 490, 686, 710, 755 |
| BseMII | CTCAG | 5 cut(s) | 262, 479, 659, 735, 776 |
| BseNI | ACTGG | 1 cut(s) | 24 |
| BseRI | GAGGAG | 1 cut(s) | 762 |
| BseSI | GKGCMC | 2 cut(s) | 589, 676 |
| BseXI | GCAGC | 4 cut(s) | 183, 238, 369, 439 |
| BseYI | CCCAGC | 1 cut(s) | 581 |
| BsgI | GTGCAG | 1 cut(s) | 446 |
| Bsh1236I | CGCG | 7 cut(s) | 47, 136, 347, 357, 512, 707, 885 |
| Bsh1285I | CGRYCG | 1 cut(s) | 158 |
| BshFI | GGCC | 4 cut(s) | 120, 515, 560, 587 |
| BshNI | GGYRCC | 1 cut(s) | 13 |
| BshTI | ACCGGT | 1 cut(s) | 153 |
| BsiEI | CGRYCG | 1 cut(s) | 158 |
| BsiHKAI | GWGCWC | 1 cut(s) | 249 |
| BsiHKCI | CYCGRG | 1 cut(s) | 861 |
| BsiSI | CCGG | 4 cut(s) | 154, 662, 680, 749 |
| BslFI | GGGAC | 1 cut(s) | 837 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 385, 489, 490, 686, 710, 755 |
| BsmAI | GTCTC | 2 cut(s) | 765, 836 |
| BsmFI | GGGAC | 1 cut(s) | 837 |
| BsmI | GAATGC | 1 cut(s) | 530 |
| BsnI | GGCC | 4 cut(s) | 120, 515, 560, 587 |
| Bso31I | GGTCTC | 2 cut(s) | 765, 836 |
| BsoBI | CYCGRG | 1 cut(s) | 861 |
| Bsp120I | GGGCCC | 1 cut(s) | 585 |
| Bsp1286I | GDGCHC | 3 cut(s) | 249, 589, 676 |
| Bsp143I | GATC | 2 cut(s) | 129, 871 |
| BspANI | GGCC | 4 cut(s) | 120, 515, 560, 587 |
| BspCNI | CTCAG | 5 cut(s) | 261, 480, 658, 734, 775 |
| BspFNI | CGCG | 7 cut(s) | 47, 136, 347, 357, 512, 707, 885 |
| BspLI | GGNNCC | 3 cut(s) | 15, 586, 587 |
| BspMAI | CTGCAG | 1 cut(s) | 387 |
| BspMI | ACCTGC | 1 cut(s) | 706 |
| BspPI | GGATC | 1 cut(s) | 137 |
| BspT107I | GGYRCC | 1 cut(s) | 13 |
| BspTNI | GGTCTC | 2 cut(s) | 765, 836 |
| BsrBI | CCGCTC | 3 cut(s) | 76, 391, 720 |
| BsrFI | RCCGGY | 2 cut(s) | 153, 661 |
| BsrI | ACTGG | 1 cut(s) | 24 |
| BssAI | RCCGGY | 2 cut(s) | 153, 661 |
| BssECI | CCNNGG | 7 cut(s) | 141, 345, 355, 510, 705, 862, 921 |
| BssMI | GATC | 2 cut(s) | 129, 871 |
| BssNI | GRCGYC | 3 cut(s) | 14, 319, 351 |
| Bst2UI | CCWGG | 1 cut(s) | 809 |
| Bst4CI | ACNGT | 2 cut(s) | 105, 540 |
| BstACI | GRCGYC | 3 cut(s) | 14, 319, 351 |
| BstBAI | YACGTR | 1 cut(s) | 797 |
| BstC8I | GCNNGC | 9 cut(s) | 18, 282, 303, 355, 362, 663, 745, 802, 903 |
| BstDEI | CTNAG | 7 cut(s) | 248, 402, 488, 645, 666, 721, 762 |
| BstDSI | CCRYGG | 5 cut(s) | 141, 345, 355, 510, 705 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 383 |
| BstF5I | GGATG | 1 cut(s) | 73 |
| BstFNI | CGCG | 7 cut(s) | 47, 136, 347, 357, 512, 707, 885 |
| BstH2I | RGCGCY | 2 cut(s) | 17, 624 |
| BstHHI | GCGC | 6 cut(s) | 16, 138, 623, 743, 817, 887 |
| BstKTI | GATC | 2 cut(s) | 132, 874 |
| BstMAI | GTCTC | 2 cut(s) | 765, 836 |
| BstMBI | GATC | 2 cut(s) | 129, 871 |
| BstMCI | CGRYCG | 1 cut(s) | 158 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 20, 350, 388, 518, 527, 655, 671 |
| BstNI | CCWGG | 1 cut(s) | 809 |
| BstNSI | RCATGY | 2 cut(s) | 208, 905 |
| BstSCI | CCNGG | 2 cut(s) | 747, 807 |
| BstSFI | CTRYAG | 2 cut(s) | 163, 383 |
| BstSLI | GKGCMC | 2 cut(s) | 589, 676 |
| BstUI | CGCG | 7 cut(s) | 47, 136, 347, 357, 512, 707, 885 |
| BstV1I | GCAGC | 4 cut(s) | 183, 238, 369, 439 |
| BstV2I | GAAGAC | 1 cut(s) | 260 |
| BstX2I | RGATCY | 1 cut(s) | 129 |
| BstYI | RGATCY | 1 cut(s) | 129 |
| Bsu36I | CCTNAGG | 1 cut(s) | 488 |
| BsuRI | GGCC | 4 cut(s) | 120, 515, 560, 587 |
| BtgI | CCRYGG | 5 cut(s) | 141, 345, 355, 510, 705 |
| BtgZI | GCGATG | 1 cut(s) | 358 |
| BtsCI | GGATG | 1 cut(s) | 73 |
| BtsI | GCAGTG | 1 cut(s) | 733 |
| BtsIMutI | CAGTG | 2 cut(s) | 31, 733 |
| BveI | ACCTGC | 1 cut(s) | 706 |
| Cac8I | GCNNGC | 9 cut(s) | 18, 282, 303, 355, 362, 663, 745, 802, 903 |
| CaiI | CAGNNNCTG | 1 cut(s) | 232 |
| CfoI | GCGC | 6 cut(s) | 16, 138, 623, 743, 817, 887 |
| Cfr10I | RCCGGY | 2 cut(s) | 153, 661 |
| Cfr13I | GGNCC | 3 cut(s) | 559, 585, 586 |
| Cfr42I | CCGCGG | 4 cut(s) | 348, 358, 513, 708 |
| CseI | GACGC | 2 cut(s) | 308, 359 |
| Csp6I | GTAC | 2 cut(s) | 550, 695 |
| CspAI | ACCGGT | 1 cut(s) | 153 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 130, 165, 505, 540 |
| CviAII | CATG | 3 cut(s) | 200, 205, 902 |
| CviQI | GTAC | 2 cut(s) | 550, 695 |
| DdeI | CTNAG | 7 cut(s) | 248, 402, 488, 645, 666, 721, 762 |
| DinI | GGCGCC | 1 cut(s) | 15 |
| DpnI | GATC | 2 cut(s) | 131, 873 |
| DpnII | GATC | 2 cut(s) | 129, 871 |
| DriI | GACNNNNNGTC | 2 cut(s) | 177, 849 |
| EaeI | YGGCCR | 1 cut(s) | 513 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 177, 849 |
| EciI | GGCGGA | 6 cut(s) | 299, 320, 347, 427, 560, 842 |
| Ecl136II | GAGCTC | 1 cut(s) | 247 |
| Eco24I | GRGCYC | 2 cut(s) | 249, 589 |
| Eco31I | GGTCTC | 2 cut(s) | 765, 836 |
| Eco53kI | GAGCTC | 1 cut(s) | 247 |
| Eco57I | CTGAAG | 3 cut(s) | 254, 629, 927 |
| Eco72I | CACGTG | 1 cut(s) | 797 |
| Eco81I | CCTNAGG | 1 cut(s) | 488 |
| Eco88I | CYCGRG | 1 cut(s) | 861 |
| EcoICRI | GAGCTC | 1 cut(s) | 247 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 383 |
| EcoO109I | RGGNCCY | 3 cut(s) | 559, 585, 586 |
| EcoRII | CCWGG | 1 cut(s) | 807 |
| EcoT38I | GRGCYC | 2 cut(s) | 249, 589 |
| EgeI | GGCGCC | 1 cut(s) | 15 |
| EheI | GGCGCC | 1 cut(s) | 15 |
| FaeI | CATG | 3 cut(s) | 203, 208, 905 |
| FaiI | YATR | 5 cut(s) | 51, 62, 201, 206, 903 |
| FaqI | GGGAC | 1 cut(s) | 837 |
| FatI | CATG | 3 cut(s) | 199, 204, 901 |
| FauI | CCCGC | 8 cut(s) | 25, 69, 118, 362, 384, 423, 712, 900 |
| FokI | GGATG | 1 cut(s) | 80 |
| FriOI | GRGCYC | 2 cut(s) | 249, 589 |
| FspBI | CTAG | 2 cut(s) | 122, 590 |
| GlaI | GCGC | 6 cut(s) | 15, 137, 622, 742, 816, 886 |
| GsaI | CCCAGC | 1 cut(s) | 585 |
| GsuI | CTGGAG | 1 cut(s) | 488 |
| HaeII | RGCGCY | 2 cut(s) | 17, 624 |
| HaeIII | GGCC | 4 cut(s) | 120, 515, 560, 587 |
| HapII | CCGG | 4 cut(s) | 154, 662, 680, 749 |
| HgaI | GACGC | 2 cut(s) | 308, 359 |
| HhaI | GCGC | 6 cut(s) | 16, 138, 623, 743, 817, 887 |
| Hin1I | GRCGYC | 3 cut(s) | 14, 319, 351 |
| Hin1II | CATG | 3 cut(s) | 203, 208, 905 |
| Hin6I | GCGC | 6 cut(s) | 14, 136, 621, 741, 815, 885 |
| HinP1I | GCGC | 6 cut(s) | 14, 136, 621, 741, 815, 885 |
| HinfI | GANTC | 5 cut(s) | 35, 434, 569, 769, 782 |
| HpaII | CCGG | 4 cut(s) | 154, 662, 680, 749 |
| HphI | GGTGA | 3 cut(s) | 83, 469, 586 |
| Hpy188I | TCNGA | 3 cut(s) | 273, 787, 871 |
| Hpy188III | TCNNGA | 1 cut(s) | 487 |
| Hpy99I | CGWCG | 1 cut(s) | 175 |
| HpyAV | CCTTC | 7 cut(s) | 233, 491, 550, 571, 610, 704, 749 |
| HpyCH4III | ACNGT | 2 cut(s) | 105, 540 |
| HpyCH4IV | ACGT | 3 cut(s) | 173, 597, 796 |
| HpyCH4V | TGCA | 3 cut(s) | 199, 385, 427 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 20, 350, 388, 518, 527, 655, 671 |
| HpyF3I | CTNAG | 7 cut(s) | 248, 402, 488, 645, 666, 721, 762 |
| HpySE526I | ACGT | 3 cut(s) | 173, 597, 796 |
| Hsp92I | GRCGYC | 3 cut(s) | 14, 319, 351 |
| Hsp92II | CATG | 3 cut(s) | 203, 208, 905 |
| HspAI | GCGC | 6 cut(s) | 14, 136, 621, 741, 815, 885 |
| KasI | GGCGCC | 1 cut(s) | 13 |
| KroI | GCCGGC | 1 cut(s) | 661 |
| KroNI | GCCGGC | 1 cut(s) | 663 |
| KspI | CCGCGG | 4 cut(s) | 348, 358, 513, 708 |
| Kzo9I | GATC | 2 cut(s) | 129, 871 |
| LmnI | GCTCC | 3 cut(s) | 244, 277, 388 |
| Lsp1109I | GCAGC | 4 cut(s) | 183, 238, 369, 439 |
| LweI | GCATC | 2 cut(s) | 650, 907 |
| MaeI | CTAG | 2 cut(s) | 122, 590 |
| MaeII | ACGT | 3 cut(s) | 173, 597, 796 |
| MaeIII | GTNAC | 2 cut(s) | 26, 792 |
| MalI | GATC | 2 cut(s) | 131, 873 |
| MbiI | CCGCTC | 3 cut(s) | 76, 391, 720 |
| MboI | GATC | 2 cut(s) | 129, 871 |
| MboII | GAAGA | 2 cut(s) | 260, 926 |
| MflI | RGATCY | 1 cut(s) | 129 |
| MhlI | GDGCHC | 3 cut(s) | 249, 589, 676 |
| Mly113I | GGCGCC | 1 cut(s) | 14 |
| MlyI | GAGTC | 5 cut(s) | 29, 443, 578, 763, 791 |
| MmeI | TCCRAC | 1 cut(s) | 765 |
| MroNI | GCCGGC | 1 cut(s) | 661 |
| MslI | CAYNNNNRTG | 2 cut(s) | 209, 422 |
| MspA1I | CMGCKG | 6 cut(s) | 347, 357, 430, 512, 521, 707 |
| MspI | CCGG | 4 cut(s) | 154, 662, 680, 749 |
| MspR9I | CCNGG | 2 cut(s) | 749, 809 |
| Mva1269I | GAATGC | 1 cut(s) | 530 |
| MvaI | CCWGG | 1 cut(s) | 809 |
| MvnI | CGCG | 7 cut(s) | 47, 136, 347, 357, 512, 707, 885 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 20, 350, 388, 518, 527, 655, 671 |
| NaeI | GCCGGC | 1 cut(s) | 663 |
| NarI | GGCGCC | 1 cut(s) | 14 |
| NciI | CCSGG | 1 cut(s) | 749 |
| NdeII | GATC | 2 cut(s) | 129, 871 |
| NgoMIV | GCCGGC | 1 cut(s) | 661 |
| NlaIII | CATG | 3 cut(s) | 203, 208, 905 |
| NlaIV | GGNNCC | 3 cut(s) | 15, 586, 587 |
| NmuCI | GTSAC | 2 cut(s) | 26, 792 |
| NspI | RCATGY | 2 cut(s) | 208, 905 |
| PaeI | GCATGC | 1 cut(s) | 905 |
| PciI | ACATGT | 1 cut(s) | 204 |
| PctI | GAATGC | 1 cut(s) | 530 |
| PdiI | GCCGGC | 1 cut(s) | 663 |
| PflFI | GACNNNGTC | 1 cut(s) | 568 |
| PinAI | ACCGGT | 1 cut(s) | 153 |
| PleI | GAGTC | 5 cut(s) | 29, 442, 577, 763, 790 |
| PluTI | GGCGCC | 1 cut(s) | 17 |
| PmaCI | CACGTG | 1 cut(s) | 797 |
| PmlI | CACGTG | 1 cut(s) | 797 |
| PpsI | GAGTC | 5 cut(s) | 29, 442, 577, 763, 790 |
| Ppu21I | YACGTR | 1 cut(s) | 797 |
| PscI | ACATGT | 1 cut(s) | 204 |
| Psp124BI | GAGCTC | 1 cut(s) | 249 |
| Psp6I | CCWGG | 1 cut(s) | 807 |
| PspCI | CACGTG | 1 cut(s) | 797 |
| PspFI | CCCAGC | 1 cut(s) | 581 |
| PspGI | CCWGG | 1 cut(s) | 807 |
| PspN4I | GGNNCC | 3 cut(s) | 15, 586, 587 |
| PspOMI | GGGCCC | 1 cut(s) | 585 |
| PspPI | GGNCC | 3 cut(s) | 559, 585, 586 |
| PstI | CTGCAG | 1 cut(s) | 387 |
| PstNI | CAGNNNCTG | 1 cut(s) | 232 |
| PsuI | RGATCY | 1 cut(s) | 129 |
| PsyI | GACNNNGTC | 1 cut(s) | 568 |
| RsaI | GTAC | 2 cut(s) | 551, 696 |
| RsaNI | GTAC | 2 cut(s) | 550, 695 |
| RseI | CAYNNNNRTG | 2 cut(s) | 209, 422 |
| SacI | GAGCTC | 1 cut(s) | 249 |
| SacII | CCGCGG | 4 cut(s) | 348, 358, 513, 708 |
| Sau3AI | GATC | 2 cut(s) | 129, 871 |
| Sau96I | GGNCC | 3 cut(s) | 559, 585, 586 |
| SchI | GAGTC | 5 cut(s) | 29, 443, 578, 763, 791 |
| ScrFI | CCNGG | 2 cut(s) | 749, 809 |
| SduI | GDGCHC | 3 cut(s) | 249, 589, 676 |
| SfaNI | GCATC | 2 cut(s) | 650, 907 |
| SfcI | CTRYAG | 2 cut(s) | 163, 383 |
| SfoI | GGCGCC | 1 cut(s) | 15 |
| Sfr303I | CCGCGG | 4 cut(s) | 348, 358, 513, 708 |
| SgrBI | CCGCGG | 4 cut(s) | 348, 358, 513, 708 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 209, 422 |
| SphI | GCATGC | 1 cut(s) | 905 |
| SspDI | GGCGCC | 1 cut(s) | 13 |
| SspMI | CTAG | 2 cut(s) | 122, 590 |
| SstI | GAGCTC | 1 cut(s) | 249 |
| StyD4I | CCNGG | 2 cut(s) | 747, 807 |
| TaaI | ACNGT | 2 cut(s) | 105, 540 |
| TaiI | ACGT | 3 cut(s) | 176, 600, 799 |
| TaqI | TCGA | 3 cut(s) | 170, 237, 627 |
| TaqII | GACCGA | 1 cut(s) | 581 |
| TatI | WGTACW | 1 cut(s) | 549 |
| TscAI | CASTG | 2 cut(s) | 31, 733 |
| TseFI | GTSAC | 2 cut(s) | 26, 792 |
| TseI | GCWGC | 4 cut(s) | 196, 226, 382, 427 |
| Tsp45I | GTSAC | 2 cut(s) | 26, 792 |
| TspGWI | ACGGA | 3 cut(s) | 80, 383, 467 |
| TspRI | CASTG | 2 cut(s) | 31, 733 |
| Tth111I | GACNNNGTC | 1 cut(s) | 568 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 383 |
| XceI | RCATGY | 2 cut(s) | 208, 905 |
| XspI | CTAG | 2 cut(s) | 122, 590 |