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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 80 |
| Acc36I | ACCTGC | 1 cut(s) | 80 |
| AccB1I | GGYRCC | 1 cut(s) | 553 |
| AccBSI | CCGCTC | 3 cut(s) | 338, 476, 629 |
| AccI | GTMKAC | 1 cut(s) | 149 |
| AccII | CGCG | 1 cut(s) | 282 |
| AclWI | GGATC | 2 cut(s) | 685, 704 |
| AcsI | RAATTY | 1 cut(s) | 291 |
| AcuI | CTGAAG | 3 cut(s) | 120, 693, 699 |
| AfaI | GTAC | 3 cut(s) | 79, 133, 285 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 311, 563, 616, 719, 759, 800 |
| AgsI | TTSAA | 1 cut(s) | 824 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 641 |
| AjnI | CCWGG | 2 cut(s) | 223, 265 |
| AleI | CACNNNNGTG | 1 cut(s) | 331 |
| AluBI | AGCT | 6 cut(s) | 15, 403, 482, 515, 536, 599 |
| AluI | AGCT | 6 cut(s) | 15, 403, 482, 515, 536, 599 |
| Alw26I | GTCTC | 4 cut(s) | 101, 171, 507, 649 |
| AlwI | GGATC | 2 cut(s) | 685, 704 |
| Ama87I | CYCGRG | 1 cut(s) | 624 |
| AoxI | GGCC | 5 cut(s) | 27, 187, 428, 565, 802 |
| ApeKI | GCWGC | 5 cut(s) | 162, 197, 237, 479, 749 |
| ApoI | RAATTY | 1 cut(s) | 291 |
| AspLEI | GCGC | 1 cut(s) | 373 |
| AspS9I | GGNCC | 3 cut(s) | 27, 187, 620 |
| AsuC2I | CCSGG | 1 cut(s) | 467 |
| AsuHPI | GGTGA | 3 cut(s) | 101, 239, 318 |
| AvaI | CYCGRG | 1 cut(s) | 624 |
| AvaII | GGWCC | 1 cut(s) | 620 |
| BanI | GGYRCC | 1 cut(s) | 553 |
| BbvCI | CCTCAGC | 1 cut(s) | 31 |
| BbvI | GCAGC | 5 cut(s) | 149, 209, 224, 491, 761 |
| BccI | CCATC | 1 cut(s) | 618 |
| BceAI | ACGGC | 3 cut(s) | 7, 380, 737 |
| BciT130I | CCWGG | 2 cut(s) | 225, 267 |
| BclI | TGATCA | 1 cut(s) | 386 |
| BcnI | CCSGG | 1 cut(s) | 467 |
| BcoDI | GTCTC | 4 cut(s) | 101, 171, 507, 649 |
| BfaI | CTAG | 2 cut(s) | 100, 516 |
| BfuAI | ACCTGC | 1 cut(s) | 80 |
| BlpI | GCTNAGC | 1 cut(s) | 404 |
| Bme1390I | CCNGG | 3 cut(s) | 225, 267, 467 |
| Bme18I | GGWCC | 1 cut(s) | 620 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 641 |
| BmeT110I | CYCGRG | 1 cut(s) | 624 |
| BmgT120I | GGNCC | 3 cut(s) | 27, 187, 620 |
| BmiI | GGNNCC | 6 cut(s) | 61, 188, 217, 555, 621, 792 |
| BmrFI | CCNGG | 3 cut(s) | 225, 267, 467 |
| BmsI | GCATC | 5 cut(s) | 149, 161, 425, 462, 575 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 792, 824 |
| BpmI | CTGGAG | 2 cut(s) | 489, 672 |
| Bpu10I | CCTNAGC | 2 cut(s) | 31, 483 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 404 |
| BpuEI | CTTGAG | 1 cut(s) | 378 |
| BpuMI | CCSGG | 1 cut(s) | 467 |
| BsaI | GGTCTC | 3 cut(s) | 101, 171, 507 |
| BsaJI | CCNNGG | 6 cut(s) | 23, 223, 465, 562, 739, 811 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 311, 563, 616, 719, 759, 800 |
| Bse118I | RCCGGY | 1 cut(s) | 114 |
| Bse1I | ACTGG | 2 cut(s) | 655, 688 |
| BseBI | CCWGG | 2 cut(s) | 225, 267 |
| BseDI | CCNNGG | 6 cut(s) | 23, 223, 465, 562, 739, 811 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 311, 563, 616, 719, 759, 800 |
| BseMII | CTCAG | 2 cut(s) | 45, 463 |
| BseNI | ACTGG | 2 cut(s) | 655, 688 |
| BseRI | GAGGAG | 2 cut(s) | 504, 803 |
| BseXI | GCAGC | 5 cut(s) | 149, 209, 224, 491, 761 |
| BseYI | CCCAGC | 1 cut(s) | 772 |
| BsgI | GTGCAG | 2 cut(s) | 273, 768 |
| Bsh1236I | CGCG | 1 cut(s) | 282 |
| BshFI | GGCC | 5 cut(s) | 29, 189, 430, 567, 804 |
| BshNI | GGYRCC | 1 cut(s) | 553 |
| BsiHKCI | CYCGRG | 1 cut(s) | 624 |
| BsiSI | CCGG | 2 cut(s) | 115, 467 |
| BslFI | GGGAC | 2 cut(s) | 51, 633 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 311, 563, 616, 719, 759, 800 |
| BsmAI | GTCTC | 4 cut(s) | 101, 171, 507, 649 |
| BsmFI | GGGAC | 2 cut(s) | 51, 633 |
| BsnI | GGCC | 5 cut(s) | 29, 189, 430, 567, 804 |
| Bso31I | GGTCTC | 3 cut(s) | 101, 171, 507 |
| BsoBI | CYCGRG | 1 cut(s) | 624 |
| Bsp143I | GATC | 4 cut(s) | 353, 386, 677, 709 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 404 |
| Bsp19I | CCATGG | 1 cut(s) | 811 |
| BspANI | GGCC | 5 cut(s) | 29, 189, 430, 567, 804 |
| BspCNI | CTCAG | 2 cut(s) | 44, 464 |
| BspFNI | CGCG | 1 cut(s) | 282 |
| BspLI | GGNNCC | 6 cut(s) | 61, 188, 217, 555, 621, 792 |
| BspMI | ACCTGC | 1 cut(s) | 80 |
| BspPI | GGATC | 2 cut(s) | 685, 704 |
| BspT107I | GGYRCC | 1 cut(s) | 553 |
| BspTNI | GGTCTC | 3 cut(s) | 101, 171, 507 |
| BsrBI | CCGCTC | 3 cut(s) | 338, 476, 629 |
| BsrFI | RCCGGY | 1 cut(s) | 114 |
| BsrI | ACTGG | 2 cut(s) | 655, 688 |
| BssAI | RCCGGY | 1 cut(s) | 114 |
| BssECI | CCNNGG | 6 cut(s) | 23, 223, 465, 562, 739, 811 |
| BssMI | GATC | 4 cut(s) | 353, 386, 677, 709 |
| BssT1I | CCWWGG | 2 cut(s) | 562, 811 |
| Bst2UI | CCWGG | 2 cut(s) | 225, 267 |
| Bst4CI | ACNGT | 2 cut(s) | 71, 233 |
| BstC8I | GCNNGC | 9 cut(s) | 191, 195, 214, 242, 432, 462, 538, 590, 597 |
| BstDEI | CTNAG | 4 cut(s) | 31, 404, 472, 483 |
| BstDSI | CCRYGG | 2 cut(s) | 23, 811 |
| BstENI | CCTNNNNNAGG | 3 cut(s) | 561, 717, 798 |
| BstFNI | CGCG | 1 cut(s) | 282 |
| BstHHI | GCGC | 1 cut(s) | 373 |
| BstKTI | GATC | 4 cut(s) | 356, 389, 680, 712 |
| BstMAI | GTCTC | 4 cut(s) | 101, 171, 507, 649 |
| BstMBI | GATC | 4 cut(s) | 353, 386, 677, 709 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 171, 213 |
| BstNI | CCWGG | 2 cut(s) | 225, 267 |
| BstNSI | RCATGY | 1 cut(s) | 108 |
| BstSCI | CCNGG | 3 cut(s) | 223, 265, 465 |
| BstUI | CGCG | 1 cut(s) | 282 |
| BstV1I | GCAGC | 5 cut(s) | 149, 209, 224, 491, 761 |
| BstX2I | RGATCY | 1 cut(s) | 709 |
| BstYI | RGATCY | 1 cut(s) | 709 |
| BsuRI | GGCC | 5 cut(s) | 29, 189, 430, 567, 804 |
| BtgI | CCRYGG | 2 cut(s) | 23, 811 |
| BtgZI | GCGATG | 1 cut(s) | 596 |
| BveI | ACCTGC | 1 cut(s) | 80 |
| Cac8I | GCNNGC | 9 cut(s) | 191, 195, 214, 242, 432, 462, 538, 590, 597 |
| CfoI | GCGC | 1 cut(s) | 373 |
| Cfr10I | RCCGGY | 1 cut(s) | 114 |
| Cfr13I | GGNCC | 3 cut(s) | 27, 187, 620 |
| CseI | GACGC | 1 cut(s) | 135 |
| Csp6I | GTAC | 3 cut(s) | 78, 132, 284 |
| CviAII | CATG | 4 cut(s) | 105, 435, 639, 812 |
| CviQI | GTAC | 3 cut(s) | 78, 132, 284 |
| DdeI | CTNAG | 4 cut(s) | 31, 404, 472, 483 |
| DpnI | GATC | 4 cut(s) | 355, 388, 679, 711 |
| DpnII | GATC | 4 cut(s) | 353, 386, 677, 709 |
| DriI | GACNNNNNGTC | 1 cut(s) | 641 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 641 |
| EciI | GGCGGA | 2 cut(s) | 66, 555 |
| Eco130I | CCWWGG | 2 cut(s) | 562, 811 |
| Eco31I | GGTCTC | 3 cut(s) | 101, 171, 507 |
| Eco47I | GGWCC | 1 cut(s) | 620 |
| Eco57I | CTGAAG | 3 cut(s) | 120, 693, 699 |
| Eco88I | CYCGRG | 1 cut(s) | 624 |
| EcoNI | CCTNNNNNAGG | 3 cut(s) | 561, 717, 798 |
| EcoO109I | RGGNCCY | 1 cut(s) | 620 |
| EcoRI | GAATTC | 1 cut(s) | 291 |
| EcoRII | CCWGG | 2 cut(s) | 223, 265 |
| EcoT14I | CCWWGG | 2 cut(s) | 562, 811 |
| ErhI | CCWWGG | 2 cut(s) | 562, 811 |
| FaeI | CATG | 4 cut(s) | 108, 438, 642, 815 |
| FaiI | YATR | 6 cut(s) | 106, 202, 436, 640, 663, 813 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 118, 150 |
| FaqI | GGGAC | 2 cut(s) | 51, 633 |
| FatI | CATG | 4 cut(s) | 104, 434, 638, 811 |
| FauI | CCCGC | 2 cut(s) | 28, 769 |
| FbaI | TGATCA | 1 cut(s) | 386 |
| FblI | GTMKAC | 1 cut(s) | 149 |
| FspBI | CTAG | 2 cut(s) | 100, 516 |
| GlaI | GCGC | 1 cut(s) | 372 |
| GsaI | CCCAGC | 1 cut(s) | 776 |
| GsuI | CTGGAG | 2 cut(s) | 489, 672 |
| HaeIII | GGCC | 5 cut(s) | 29, 189, 430, 567, 804 |
| HapII | CCGG | 2 cut(s) | 115, 467 |
| HgaI | GACGC | 1 cut(s) | 135 |
| HhaI | GCGC | 1 cut(s) | 373 |
| Hin1II | CATG | 4 cut(s) | 108, 438, 642, 815 |
| Hin6I | GCGC | 1 cut(s) | 371 |
| HinP1I | GCGC | 1 cut(s) | 371 |
| HincII | GTYRAC | 1 cut(s) | 150 |
| HindII | GTYRAC | 1 cut(s) | 150 |
| HinfI | GANTC | 2 cut(s) | 270, 723 |
| HpaII | CCGG | 2 cut(s) | 115, 467 |
| HphI | GGTGA | 3 cut(s) | 101, 239, 318 |
| Hpy166II | GTNNAC | 1 cut(s) | 150 |
| Hpy188I | TCNGA | 2 cut(s) | 290, 743 |
| Hpy188III | TCNNGA | 4 cut(s) | 296, 357, 506, 698 |
| Hpy8I | GTNNAC | 1 cut(s) | 150 |
| Hpy99I | CGWCG | 2 cut(s) | 151, 579 |
| HpyAV | CCTTC | 3 cut(s) | 419, 668, 723 |
| HpyCH4III | ACNGT | 2 cut(s) | 71, 233 |
| HpyCH4IV | ACGT | 2 cut(s) | 544, 577 |
| HpyCH4V | TGCA | 3 cut(s) | 254, 434, 749 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 171, 213 |
| HpyF3I | CTNAG | 4 cut(s) | 31, 404, 472, 483 |
| HpySE526I | ACGT | 2 cut(s) | 544, 577 |
| Hsp92II | CATG | 4 cut(s) | 108, 438, 642, 815 |
| HspAI | GCGC | 1 cut(s) | 371 |
| Ksp22I | TGATCA | 1 cut(s) | 386 |
| Kzo9I | GATC | 4 cut(s) | 353, 386, 677, 709 |
| LmnI | GCTCC | 4 cut(s) | 221, 512, 653, 790 |
| Lsp1109I | GCAGC | 5 cut(s) | 149, 209, 224, 491, 761 |
| LweI | GCATC | 5 cut(s) | 149, 161, 425, 462, 575 |
| MaeI | CTAG | 2 cut(s) | 100, 516 |
| MaeII | ACGT | 2 cut(s) | 544, 577 |
| MaeIII | GTNAC | 2 cut(s) | 107, 227 |
| MalI | GATC | 4 cut(s) | 355, 388, 679, 711 |
| MbiI | CCGCTC | 3 cut(s) | 338, 476, 629 |
| MboI | GATC | 4 cut(s) | 353, 386, 677, 709 |
| MboII | GAAGA | 2 cut(s) | 776, 792 |
| MflI | RGATCY | 1 cut(s) | 709 |
| MluCI | AATT | 2 cut(s) | 291, 703 |
| MlyI | GAGTC | 1 cut(s) | 264 |
| MmeI | TCCRAC | 1 cut(s) | 736 |
| MslI | CAYNNNNRTG | 1 cut(s) | 331 |
| MspA1I | CMGCKG | 3 cut(s) | 35, 140, 776 |
| MspI | CCGG | 2 cut(s) | 115, 467 |
| MspR9I | CCNGG | 3 cut(s) | 225, 267, 467 |
| MvaI | CCWGG | 2 cut(s) | 225, 267 |
| MvnI | CGCG | 1 cut(s) | 282 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 171, 213 |
| NciI | CCSGG | 1 cut(s) | 467 |
| NcoI | CCATGG | 1 cut(s) | 811 |
| NdeII | GATC | 4 cut(s) | 353, 386, 677, 709 |
| NlaIII | CATG | 4 cut(s) | 108, 438, 642, 815 |
| NlaIV | GGNNCC | 6 cut(s) | 61, 188, 217, 555, 621, 792 |
| NmuCI | GTSAC | 2 cut(s) | 107, 227 |
| NspI | RCATGY | 1 cut(s) | 108 |
| OliI | CACNNNNGTG | 1 cut(s) | 331 |
| PaeR7I | CTCGAG | 1 cut(s) | 624 |
| PaqCI | CACCTGC | 1 cut(s) | 80 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 279 |
| PfeI | GAWTC | 1 cut(s) | 723 |
| PleI | GAGTC | 1 cut(s) | 264 |
| PpsI | GAGTC | 1 cut(s) | 264 |
| PpuMI | RGGWCCY | 1 cut(s) | 620 |
| Psp5II | RGGWCCY | 1 cut(s) | 620 |
| Psp6I | CCWGG | 2 cut(s) | 223, 265 |
| PspFI | CCCAGC | 1 cut(s) | 772 |
| PspGI | CCWGG | 2 cut(s) | 223, 265 |
| PspN4I | GGNNCC | 6 cut(s) | 61, 188, 217, 555, 621, 792 |
| PspPI | GGNCC | 3 cut(s) | 27, 187, 620 |
| PspPPI | RGGWCCY | 1 cut(s) | 620 |
| PspXI | VCTCGAGB | 1 cut(s) | 624 |
| PsuI | RGATCY | 1 cut(s) | 709 |
| RsaI | GTAC | 3 cut(s) | 79, 133, 285 |
| RsaNI | GTAC | 3 cut(s) | 78, 132, 284 |
| RseI | CAYNNNNRTG | 1 cut(s) | 331 |
| SalI | GTCGAC | 1 cut(s) | 148 |
| Sau3AI | GATC | 4 cut(s) | 353, 386, 677, 709 |
| Sau96I | GGNCC | 3 cut(s) | 27, 187, 620 |
| SchI | GAGTC | 1 cut(s) | 264 |
| ScrFI | CCNGG | 3 cut(s) | 225, 267, 467 |
| SfaNI | GCATC | 5 cut(s) | 149, 161, 425, 462, 575 |
| Sfr274I | CTCGAG | 1 cut(s) | 624 |
| SgrAI | CRCCGGYG | 1 cut(s) | 114 |
| SinI | GGWCC | 1 cut(s) | 620 |
| SlaI | CTCGAG | 1 cut(s) | 624 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 331 |
| SmlI | CTYRAG | 2 cut(s) | 357, 624 |
| SmoI | CTYRAG | 2 cut(s) | 357, 624 |
| Sse9I | AATT | 2 cut(s) | 291, 703 |
| SspMI | CTAG | 2 cut(s) | 100, 516 |
| StyD4I | CCNGG | 3 cut(s) | 223, 265, 465 |
| StyI | CCWWGG | 2 cut(s) | 562, 811 |
| TaaI | ACNGT | 2 cut(s) | 71, 233 |
| TaiI | ACGT | 2 cut(s) | 547, 580 |
| TaqI | TCGA | 4 cut(s) | 149, 375, 456, 625 |
| TasI | AATT | 2 cut(s) | 291, 703 |
| TauI | GCSGC | 9 cut(s) | 51, 89, 168, 282, 453, 479, 595, 690, 807 |
| TfiI | GAWTC | 1 cut(s) | 723 |
| TseFI | GTSAC | 2 cut(s) | 107, 227 |
| TseI | GCWGC | 5 cut(s) | 162, 197, 237, 479, 749 |
| Tsp45I | GTSAC | 2 cut(s) | 107, 227 |
| VpaK11BI | GGWCC | 1 cut(s) | 620 |
| XagI | CCTNNNNNAGG | 3 cut(s) | 561, 717, 798 |
| XapI | RAATTY | 1 cut(s) | 291 |
| XceI | RCATGY | 1 cut(s) | 108 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 533 |
| XhoI | CTCGAG | 1 cut(s) | 624 |
| XmiI | GTMKAC | 1 cut(s) | 149 |
| XspI | CTAG | 2 cut(s) | 100, 516 |