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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 295 |
| AccB1I | GGYRCC | 1 cut(s) | 29 |
| AccBSI | CCGCTC | 3 cut(s) | 574, 631, 772 |
| AccII | CGCG | 3 cut(s) | 156, 323, 325 |
| AcoI | YGGCCR | 1 cut(s) | 313 |
| AcuI | CTGAAG | 1 cut(s) | 7 |
| AcyI | GRCGYC | 2 cut(s) | 608, 741 |
| AfaI | GTAC | 3 cut(s) | 50, 128, 493 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 12, 39, 69, 251, 264, 383, 664, 687, 771 |
| AjnI | CCWGG | 2 cut(s) | 501, 591 |
| AluBI | AGCT | 2 cut(s) | 283, 637 |
| AluI | AGCT | 2 cut(s) | 283, 637 |
| Alw26I | GTCTC | 3 cut(s) | 212, 213, 492 |
| AoxI | GGCC | 6 cut(s) | 313, 374, 420, 589, 655, 678 |
| ApaI | GGGCCC | 2 cut(s) | 378, 424 |
| ApeKI | GCWGC | 2 cut(s) | 291, 430 |
| AspLEI | GCGC | 4 cut(s) | 296, 311, 325, 349 |
| AspS9I | GGNCC | 8 cut(s) | 60, 268, 374, 375, 420, 421, 655, 679 |
| AsuC2I | CCSGG | 1 cut(s) | 229 |
| AsuHPI | GGTGA | 4 cut(s) | 356, 424, 554, 554 |
| AvaII | GGWCC | 2 cut(s) | 60, 268 |
| AxyI | CCTNAGG | 1 cut(s) | 459 |
| BaeGI | GKGCMC | 2 cut(s) | 378, 424 |
| BanI | GGYRCC | 1 cut(s) | 29 |
| BanII | GRGCYC | 3 cut(s) | 246, 378, 424 |
| BbvI | GCAGC | 2 cut(s) | 278, 442 |
| BccI | CCATC | 1 cut(s) | 116 |
| BceAI | ACGGC | 1 cut(s) | 51 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 713, 747 |
| BciT130I | CCWGG | 2 cut(s) | 503, 593 |
| BcnI | CCSGG | 1 cut(s) | 229 |
| BcoDI | GTCTC | 3 cut(s) | 212, 213, 492 |
| BfaI | CTAG | 2 cut(s) | 284, 623 |
| BfmI | CTRYAG | 1 cut(s) | 659 |
| BfoI | RGCGCY | 1 cut(s) | 312 |
| BisI | GCNGC | 7 cut(s) | 154, 292, 431, 486, 516, 589, 735 |
| BlsI | GCNGC | 7 cut(s) | 155, 293, 432, 487, 517, 590, 736 |
| Bme1390I | CCNGG | 3 cut(s) | 229, 503, 593 |
| Bme18I | GGWCC | 2 cut(s) | 60, 268 |
| BmgT120I | GGNCC | 8 cut(s) | 60, 268, 374, 375, 420, 421, 655, 679 |
| BmrFI | CCNGG | 3 cut(s) | 229, 503, 593 |
| BmrI | ACTGGG | 1 cut(s) | 426 |
| BmsI | GCATC | 3 cut(s) | 174, 698, 721 |
| BmuI | ACTGGG | 1 cut(s) | 426 |
| BoxI | GACNNNNGTC | 1 cut(s) | 204 |
| BpmI | CTGGAG | 2 cut(s) | 199, 614 |
| Bpu10I | CCTNAGC | 1 cut(s) | 638 |
| BpuMI | CCSGG | 1 cut(s) | 229 |
| BsaHI | GRCGYC | 2 cut(s) | 608, 741 |
| BsaI | GGTCTC | 1 cut(s) | 492 |
| BsaJI | CCNNGG | 2 cut(s) | 33, 745 |
| BsaWI | WCCGGW | 1 cut(s) | 215 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 65, 95, 542, 572 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 12, 39, 69, 251, 264, 383, 664, 687, 771 |
| Bse118I | RCCGGY | 1 cut(s) | 311 |
| Bse1I | ACTGG | 2 cut(s) | 14, 421 |
| Bse21I | CCTNAGG | 1 cut(s) | 459 |
| BseBI | CCWGG | 2 cut(s) | 503, 593 |
| BseDI | CCNNGG | 2 cut(s) | 33, 745 |
| BseGI | GGATG | 2 cut(s) | 108, 406 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 12, 39, 69, 251, 264, 383, 664, 687, 771 |
| BseMII | CTCAG | 1 cut(s) | 450 |
| BseNI | ACTGG | 2 cut(s) | 14, 421 |
| BseRI | GAGGAG | 3 cut(s) | 410, 659, 689 |
| BseSI | GKGCMC | 2 cut(s) | 378, 424 |
| BseXI | GCAGC | 2 cut(s) | 278, 442 |
| Bsh1236I | CGCG | 3 cut(s) | 156, 323, 325 |
| BshFI | GGCC | 6 cut(s) | 315, 376, 422, 591, 657, 680 |
| BshNI | GGYRCC | 1 cut(s) | 29 |
| BsiSI | CCGG | 4 cut(s) | 216, 228, 312, 384 |
| BslFI | GGGAC | 3 cut(s) | 281, 680, 788 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 12, 39, 69, 251, 264, 383, 664, 687, 771 |
| BsmAI | GTCTC | 3 cut(s) | 212, 213, 492 |
| BsmBI | CGTCTC | 1 cut(s) | 212 |
| BsmFI | GGGAC | 3 cut(s) | 281, 680, 788 |
| BsnI | GGCC | 6 cut(s) | 315, 376, 422, 591, 657, 680 |
| Bso31I | GGTCTC | 1 cut(s) | 492 |
| Bsp120I | GGGCCC | 2 cut(s) | 374, 420 |
| Bsp1286I | GDGCHC | 3 cut(s) | 246, 378, 424 |
| BspANI | GGCC | 6 cut(s) | 315, 376, 422, 591, 657, 680 |
| BspCNI | CTCAG | 1 cut(s) | 451 |
| BspFNI | CGCG | 3 cut(s) | 156, 323, 325 |
| BspHI | TCATGA | 1 cut(s) | 139 |
| BspT107I | GGYRCC | 1 cut(s) | 29 |
| BspTNI | GGTCTC | 1 cut(s) | 492 |
| BsrBI | CCGCTC | 3 cut(s) | 574, 631, 772 |
| BsrFI | RCCGGY | 1 cut(s) | 311 |
| BsrI | ACTGG | 2 cut(s) | 14, 421 |
| BssAI | RCCGGY | 1 cut(s) | 311 |
| BssECI | CCNNGG | 2 cut(s) | 33, 745 |
| BssNI | GRCGYC | 2 cut(s) | 608, 741 |
| Bst2UI | CCWGG | 2 cut(s) | 503, 593 |
| Bst4CI | ACNGT | 3 cut(s) | 272, 344, 542 |
| Bst6I | CTCTTC | 2 cut(s) | 141, 387 |
| BstACI | GRCGYC | 2 cut(s) | 608, 741 |
| BstC8I | GCNNGC | 7 cut(s) | 163, 242, 313, 374, 450, 572, 655 |
| BstDEI | CTNAG | 3 cut(s) | 459, 638, 670 |
| BstDSI | CCRYGG | 2 cut(s) | 33, 745 |
| BstF5I | GGATG | 2 cut(s) | 108, 406 |
| BstFNI | CGCG | 3 cut(s) | 156, 323, 325 |
| BstH2I | RGCGCY | 1 cut(s) | 312 |
| BstHHI | GCGC | 4 cut(s) | 296, 311, 325, 349 |
| BstMAI | GTCTC | 3 cut(s) | 212, 213, 492 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 162, 329, 449, 454, 521, 740 |
| BstNI | CCWGG | 2 cut(s) | 503, 593 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 204 |
| BstSCI | CCNGG | 3 cut(s) | 227, 501, 591 |
| BstSFI | CTRYAG | 1 cut(s) | 659 |
| BstSLI | GKGCMC | 2 cut(s) | 378, 424 |
| BstUI | CGCG | 3 cut(s) | 156, 323, 325 |
| BstV1I | GCAGC | 2 cut(s) | 278, 442 |
| Bsu36I | CCTNAGG | 1 cut(s) | 459 |
| BsuRI | GGCC | 6 cut(s) | 315, 376, 422, 591, 657, 680 |
| BtgI | CCRYGG | 2 cut(s) | 33, 745 |
| BtgZI | GCGATG | 1 cut(s) | 721 |
| BtsCI | GGATG | 2 cut(s) | 108, 406 |
| BtsI | GCAGTG | 1 cut(s) | 283 |
| BtsIMutI | CAGTG | 1 cut(s) | 283 |
| Cac8I | GCNNGC | 7 cut(s) | 163, 242, 313, 374, 450, 572, 655 |
| CciI | TCATGA | 1 cut(s) | 139 |
| CfoI | GCGC | 4 cut(s) | 296, 311, 325, 349 |
| Cfr10I | RCCGGY | 1 cut(s) | 311 |
| Cfr13I | GGNCC | 8 cut(s) | 60, 268, 374, 375, 420, 421, 655, 679 |
| CseI | GACGC | 2 cut(s) | 597, 749 |
| Csp6I | GTAC | 3 cut(s) | 49, 127, 492 |
| CviAII | CATG | 2 cut(s) | 140, 425 |
| CviQI | GTAC | 3 cut(s) | 49, 127, 492 |
| DdeI | CTNAG | 3 cut(s) | 459, 638, 670 |
| EaeI | YGGCCR | 1 cut(s) | 313 |
| Eam1104I | CTCTTC | 2 cut(s) | 141, 387 |
| EarI | CTCTTC | 2 cut(s) | 141, 387 |
| EciI | GGCGGA | 2 cut(s) | 369, 444 |
| Eco24I | GRGCYC | 3 cut(s) | 246, 378, 424 |
| Eco31I | GGTCTC | 1 cut(s) | 492 |
| Eco47I | GGWCC | 2 cut(s) | 60, 268 |
| Eco57I | CTGAAG | 1 cut(s) | 7 |
| Eco81I | CCTNAGG | 1 cut(s) | 459 |
| EcoO109I | RGGNCCY | 1 cut(s) | 420 |
| EcoRII | CCWGG | 2 cut(s) | 501, 591 |
| EcoT38I | GRGCYC | 3 cut(s) | 246, 378, 424 |
| Esp3I | CGTCTC | 1 cut(s) | 212 |
| FaeI | CATG | 2 cut(s) | 143, 428 |
| FaiI | YATR | 4 cut(s) | 141, 318, 369, 426 |
| FaqI | GGGAC | 3 cut(s) | 281, 680, 788 |
| FatI | CATG | 2 cut(s) | 139, 424 |
| Fnu4HI | GCNGC | 7 cut(s) | 154, 292, 431, 486, 516, 589, 735 |
| FokI | GGATG | 2 cut(s) | 95, 413 |
| FriOI | GRGCYC | 3 cut(s) | 246, 378, 424 |
| Fsp4HI | GCNGC | 7 cut(s) | 154, 292, 431, 486, 516, 589, 735 |
| FspBI | CTAG | 2 cut(s) | 284, 623 |
| FspI | TGCGCA | 1 cut(s) | 295 |
| GlaI | GCGC | 4 cut(s) | 295, 310, 324, 348 |
| GluI | GCNGC | 7 cut(s) | 154, 292, 431, 486, 516, 589, 735 |
| GsuI | CTGGAG | 2 cut(s) | 199, 614 |
| HaeII | RGCGCY | 1 cut(s) | 312 |
| HaeIII | GGCC | 6 cut(s) | 315, 376, 422, 591, 657, 680 |
| HapII | CCGG | 4 cut(s) | 216, 228, 312, 384 |
| HgaI | GACGC | 2 cut(s) | 597, 749 |
| HhaI | GCGC | 4 cut(s) | 296, 311, 325, 349 |
| Hin1I | GRCGYC | 2 cut(s) | 608, 741 |
| Hin1II | CATG | 2 cut(s) | 143, 428 |
| Hin6I | GCGC | 4 cut(s) | 294, 309, 323, 347 |
| HinP1I | GCGC | 4 cut(s) | 294, 309, 323, 347 |
| HinfI | GANTC | 3 cut(s) | 184, 221, 506 |
| HpaII | CCGG | 4 cut(s) | 216, 228, 312, 384 |
| HphI | GGTGA | 4 cut(s) | 356, 424, 554, 554 |
| Hpy166II | GTNNAC | 1 cut(s) | 545 |
| Hpy188I | TCNGA | 3 cut(s) | 97, 170, 251 |
| Hpy188III | TCNNGA | 2 cut(s) | 140, 532 |
| Hpy8I | GTNNAC | 1 cut(s) | 545 |
| Hpy99I | CGWCG | 2 cut(s) | 82, 276 |
| HpyAV | CCTTC | 2 cut(s) | 31, 433 |
| HpyCH4III | ACNGT | 3 cut(s) | 272, 344, 542 |
| HpyCH4IV | ACGT | 1 cut(s) | 80 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 162, 329, 449, 454, 521, 740 |
| HpyF3I | CTNAG | 3 cut(s) | 459, 638, 670 |
| HpySE526I | ACGT | 1 cut(s) | 80 |
| Hsp92I | GRCGYC | 2 cut(s) | 608, 741 |
| Hsp92II | CATG | 2 cut(s) | 143, 428 |
| HspAI | GCGC | 4 cut(s) | 294, 309, 323, 347 |
| KroI | GCCGGC | 1 cut(s) | 311 |
| KroNI | GCCGGC | 1 cut(s) | 313 |
| LmnI | GCTCC | 4 cut(s) | 73, 457, 469, 634 |
| Lsp1109I | GCAGC | 2 cut(s) | 278, 442 |
| LweI | GCATC | 3 cut(s) | 174, 698, 721 |
| MaeI | CTAG | 2 cut(s) | 284, 623 |
| MaeII | ACGT | 1 cut(s) | 80 |
| MaeIII | GTNAC | 2 cut(s) | 362, 412 |
| MbiI | CCGCTC | 3 cut(s) | 574, 631, 772 |
| MboII | GAAGA | 4 cut(s) | 158, 347, 404, 448 |
| MhlI | GDGCHC | 3 cut(s) | 246, 378, 424 |
| MluCI | AATT | 1 cut(s) | 87 |
| MlyI | GAGTC | 2 cut(s) | 215, 500 |
| MmeI | TCCRAC | 2 cut(s) | 75, 87 |
| MroNI | GCCGGC | 1 cut(s) | 311 |
| MseI | TTAA | 1 cut(s) | 90 |
| MspA1I | CMGCKG | 1 cut(s) | 27 |
| MspI | CCGG | 4 cut(s) | 216, 228, 312, 384 |
| MspR9I | CCNGG | 3 cut(s) | 229, 503, 593 |
| MvaI | CCWGG | 2 cut(s) | 503, 593 |
| MvnI | CGCG | 3 cut(s) | 156, 323, 325 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 162, 329, 449, 454, 521, 740 |
| NaeI | GCCGGC | 1 cut(s) | 313 |
| NciI | CCSGG | 1 cut(s) | 229 |
| NgoMIV | GCCGGC | 1 cut(s) | 311 |
| NlaIII | CATG | 2 cut(s) | 143, 428 |
| NmeAIII | GCCGAG | 2 cut(s) | 330, 550 |
| NmuCI | GTSAC | 2 cut(s) | 362, 412 |
| NsbI | TGCGCA | 1 cut(s) | 295 |
| PagI | TCATGA | 1 cut(s) | 139 |
| PdiI | GCCGGC | 1 cut(s) | 313 |
| PfeI | GAWTC | 1 cut(s) | 184 |
| PkrI | GCNGC | 7 cut(s) | 155, 293, 432, 487, 517, 590, 736 |
| PleI | GAGTC | 2 cut(s) | 215, 500 |
| PpsI | GAGTC | 2 cut(s) | 215, 500 |
| PshAI | GACNNNNGTC | 1 cut(s) | 204 |
| Psp6I | CCWGG | 2 cut(s) | 501, 591 |
| PspGI | CCWGG | 2 cut(s) | 501, 591 |
| PspOMI | GGGCCC | 2 cut(s) | 374, 420 |
| PspPI | GGNCC | 8 cut(s) | 60, 268, 374, 375, 420, 421, 655, 679 |
| RsaI | GTAC | 3 cut(s) | 50, 128, 493 |
| RsaNI | GTAC | 3 cut(s) | 49, 127, 492 |
| SaqAI | TTAA | 1 cut(s) | 90 |
| SatI | GCNGC | 7 cut(s) | 154, 292, 431, 486, 516, 589, 735 |
| Sau96I | GGNCC | 8 cut(s) | 60, 268, 374, 375, 420, 421, 655, 679 |
| SchI | GAGTC | 2 cut(s) | 215, 500 |
| ScrFI | CCNGG | 3 cut(s) | 229, 503, 593 |
| SduI | GDGCHC | 3 cut(s) | 246, 378, 424 |
| SfaNI | GCATC | 3 cut(s) | 174, 698, 721 |
| SfcI | CTRYAG | 1 cut(s) | 659 |
| SinI | GGWCC | 2 cut(s) | 60, 268 |
| Sse9I | AATT | 1 cut(s) | 87 |
| SspMI | CTAG | 2 cut(s) | 284, 623 |
| StyD4I | CCNGG | 3 cut(s) | 227, 501, 591 |
| TaaI | ACNGT | 3 cut(s) | 272, 344, 542 |
| TaiI | ACGT | 1 cut(s) | 83 |
| TaqI | TCGA | 1 cut(s) | 702 |
| TasI | AATT | 1 cut(s) | 87 |
| TauI | GCSGC | 5 cut(s) | 156, 488, 518, 591, 737 |
| TfiI | GAWTC | 1 cut(s) | 184 |
| Tru1I | TTAA | 1 cut(s) | 90 |
| Tru9I | TTAA | 1 cut(s) | 90 |
| TscAI | CASTG | 1 cut(s) | 283 |
| TseFI | GTSAC | 2 cut(s) | 362, 412 |
| TseI | GCWGC | 2 cut(s) | 291, 430 |
| Tsp45I | GTSAC | 2 cut(s) | 362, 412 |
| TspGWI | ACGGA | 1 cut(s) | 194 |
| TspRI | CASTG | 1 cut(s) | 283 |
| VpaK11BI | GGWCC | 2 cut(s) | 60, 268 |
| XspI | CTAG | 2 cut(s) | 284, 623 |