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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 611 |
| AccBSI | CCGCTC | 4 cut(s) | 116, 597, 811, 952 |
| AccI | GTMKAC | 1 cut(s) | 710 |
| AccII | CGCG | 4 cut(s) | 141, 156, 228, 617 |
| AcoI | YGGCCR | 3 cut(s) | 444, 588, 936 |
| AcuI | CTGAAG | 1 cut(s) | 718 |
| AcyI | GRCGYC | 2 cut(s) | 204, 788 |
| AfaI | GTAC | 6 cut(s) | 128, 260, 620, 659, 705, 739 |
| AjiI | CACGTC | 1 cut(s) | 574 |
| AjnI | CCWGG | 5 cut(s) | 51, 246, 306, 565, 861 |
| AluBI | AGCT | 2 cut(s) | 817, 934 |
| AluI | AGCT | 2 cut(s) | 817, 934 |
| Alw21I | GWGCWC | 2 cut(s) | 465, 819 |
| Alw26I | GTCTC | 2 cut(s) | 245, 296 |
| Alw44I | GTGCAC | 1 cut(s) | 461 |
| Ama87I | CYCGRG | 2 cut(s) | 557, 801 |
| AoxI | GGCC | 8 cut(s) | 444, 477, 522, 588, 598, 835, 858, 936 |
| ApaI | GGGCCC | 1 cut(s) | 526 |
| ApaLI | GTGCAC | 1 cut(s) | 461 |
| ApeKI | GCWGC | 3 cut(s) | 379, 766, 796 |
| AspLEI | GCGC | 3 cut(s) | 230, 313, 491 |
| AspS9I | GGNCC | 9 cut(s) | 18, 60, 223, 478, 522, 523, 835, 859, 955 |
| AsuC2I | CCSGG | 3 cut(s) | 451, 802, 803 |
| AsuHPI | GGTGA | 4 cut(s) | 304, 383, 409, 653 |
| AvaI | CYCGRG | 2 cut(s) | 557, 801 |
| AvaII | GGWCC | 4 cut(s) | 18, 60, 223, 955 |
| BaeGI | GKGCMC | 3 cut(s) | 465, 526, 753 |
| BanII | GRGCYC | 2 cut(s) | 526, 819 |
| BauI | CACGAG | 2 cut(s) | 592, 770 |
| BbsI | GAAGAC | 1 cut(s) | 290 |
| Bbv12I | GWGCWC | 2 cut(s) | 465, 819 |
| BbvI | GCAGC | 3 cut(s) | 366, 753, 808 |
| BccI | CCATC | 2 cut(s) | 632, 669 |
| BceAI | ACGGC | 3 cut(s) | 183, 701, 923 |
| BciT130I | CCWGG | 5 cut(s) | 53, 248, 308, 567, 863 |
| BcnI | CCSGG | 3 cut(s) | 451, 802, 803 |
| BcoDI | GTCTC | 2 cut(s) | 245, 296 |
| BfaI | CTAG | 2 cut(s) | 299, 602 |
| BfmI | CTRYAG | 2 cut(s) | 545, 839 |
| BfoI | RGCGCY | 1 cut(s) | 314 |
| BlpI | GCTNAGC | 1 cut(s) | 314 |
| BmcAI | AGTACT | 1 cut(s) | 739 |
| Bme1390I | CCNGG | 8 cut(s) | 53, 248, 308, 451, 567, 802, 803, 863 |
| Bme18I | GGWCC | 4 cut(s) | 18, 60, 223, 955 |
| BmeT110I | CYCGRG | 2 cut(s) | 557, 801 |
| BmgBI | CACGTC | 1 cut(s) | 574 |
| BmgT120I | GGNCC | 9 cut(s) | 18, 60, 223, 478, 522, 523, 835, 859, 955 |
| BmiI | GGNNCC | 7 cut(s) | 61, 75, 330, 523, 524, 564, 956 |
| BmrFI | CCNGG | 8 cut(s) | 53, 248, 308, 451, 567, 802, 803, 863 |
| BmsI | GCATC | 1 cut(s) | 910 |
| BpiI | GAAGAC | 1 cut(s) | 290 |
| BpmI | CTGGAG | 1 cut(s) | 269 |
| Bpu10I | CCTNAGC | 1 cut(s) | 818 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 314 |
| BpuMI | CCSGG | 3 cut(s) | 451, 802, 803 |
| BsaAI | YACGTR | 1 cut(s) | 164 |
| BsaHI | GRCGYC | 2 cut(s) | 204, 788 |
| BsaI | GGTCTC | 2 cut(s) | 245, 296 |
| BsaJI | CCNNGG | 8 cut(s) | 219, 306, 558, 566, 800, 801, 861, 925 |
| BsaWI | WCCGGW | 1 cut(s) | 331 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 65, 95, 242, 272 |
| Bse1I | ACTGG | 2 cut(s) | 14, 406 |
| BseBI | CCWGG | 5 cut(s) | 53, 248, 308, 567, 863 |
| BseDI | CCNNGG | 8 cut(s) | 219, 306, 558, 566, 800, 801, 861, 925 |
| BseGI | GGATG | 1 cut(s) | 508 |
| BseMII | CTCAG | 4 cut(s) | 293, 315, 440, 832 |
| BseNI | ACTGG | 2 cut(s) | 14, 406 |
| BseRI | GAGGAG | 2 cut(s) | 512, 839 |
| BseSI | GKGCMC | 3 cut(s) | 465, 526, 753 |
| BseXI | GCAGC | 3 cut(s) | 366, 753, 808 |
| BseYI | CCCAGC | 2 cut(s) | 480, 676 |
| BsgI | GTGCAG | 1 cut(s) | 752 |
| Bsh1236I | CGCG | 4 cut(s) | 141, 156, 228, 617 |
| Bsh1285I | CGRYCG | 2 cut(s) | 710, 714 |
| BshFI | GGCC | 8 cut(s) | 446, 479, 524, 590, 600, 837, 860, 938 |
| BsiEI | CGRYCG | 2 cut(s) | 710, 714 |
| BsiHKAI | GWGCWC | 2 cut(s) | 465, 819 |
| BsiHKCI | CYCGRG | 2 cut(s) | 557, 801 |
| BsiSI | CCGG | 3 cut(s) | 332, 451, 802 |
| BsiWI | CGTACG | 1 cut(s) | 618 |
| BslFI | GGGAC | 4 cut(s) | 584, 662, 860, 968 |
| BsmAI | GTCTC | 2 cut(s) | 245, 296 |
| BsmFI | GGGAC | 4 cut(s) | 584, 662, 860, 968 |
| BsnI | GGCC | 8 cut(s) | 446, 479, 524, 590, 600, 837, 860, 938 |
| Bso31I | GGTCTC | 2 cut(s) | 245, 296 |
| BsoBI | CYCGRG | 2 cut(s) | 557, 801 |
| Bsp120I | GGGCCC | 1 cut(s) | 522 |
| Bsp1286I | GDGCHC | 4 cut(s) | 465, 526, 753, 819 |
| Bsp143I | GATC | 1 cut(s) | 513 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 314 |
| Bsp19I | CCATGG | 1 cut(s) | 219 |
| Bsp68I | TCGCGA | 1 cut(s) | 141 |
| BspANI | GGCC | 8 cut(s) | 446, 479, 524, 590, 600, 837, 860, 938 |
| BspCNI | CTCAG | 4 cut(s) | 292, 316, 439, 831 |
| BspFNI | CGCG | 4 cut(s) | 141, 156, 228, 617 |
| BspLI | GGNNCC | 7 cut(s) | 61, 75, 330, 523, 524, 564, 956 |
| BspMAI | CTGCAG | 1 cut(s) | 843 |
| BspTNI | GGTCTC | 2 cut(s) | 245, 296 |
| BsrBI | CCGCTC | 4 cut(s) | 116, 597, 811, 952 |
| BsrI | ACTGG | 2 cut(s) | 14, 406 |
| BssECI | CCNNGG | 8 cut(s) | 219, 306, 558, 566, 800, 801, 861, 925 |
| BssMI | GATC | 1 cut(s) | 513 |
| BssNI | GRCGYC | 2 cut(s) | 204, 788 |
| BssSI | CACGAG | 2 cut(s) | 592, 770 |
| BssT1I | CCWWGG | 1 cut(s) | 219 |
| Bst2BI | CACGAG | 2 cut(s) | 592, 770 |
| Bst2UI | CCWGG | 5 cut(s) | 53, 248, 308, 567, 863 |
| Bst4CI | ACNGT | 5 cut(s) | 289, 388, 475, 708, 908 |
| Bst6I | CTCTTC | 2 cut(s) | 141, 489 |
| BstACI | GRCGYC | 2 cut(s) | 204, 788 |
| BstBAI | YACGTR | 1 cut(s) | 164 |
| BstC8I | GCNNGC | 9 cut(s) | 196, 273, 412, 526, 530, 671, 839, 932, 936 |
| BstDEI | CTNAG | 6 cut(s) | 279, 314, 324, 426, 691, 818 |
| BstDSI | CCRYGG | 2 cut(s) | 219, 925 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 896 |
| BstF5I | GGATG | 1 cut(s) | 508 |
| BstFNI | CGCG | 4 cut(s) | 141, 156, 228, 617 |
| BstH2I | RGCGCY | 1 cut(s) | 314 |
| BstHHI | GCGC | 3 cut(s) | 230, 313, 491 |
| BstKTI | GATC | 1 cut(s) | 516 |
| BstMAI | GTCTC | 2 cut(s) | 245, 296 |
| BstMBI | GATC | 1 cut(s) | 513 |
| BstMCI | CGRYCG | 2 cut(s) | 710, 714 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 346, 416, 460, 548, 584 |
| BstNI | CCWGG | 5 cut(s) | 53, 248, 308, 567, 863 |
| BstSCI | CCNGG | 8 cut(s) | 51, 246, 306, 449, 565, 800, 801, 861 |
| BstSFI | CTRYAG | 2 cut(s) | 545, 839 |
| BstSLI | GKGCMC | 3 cut(s) | 465, 526, 753 |
| BstUI | CGCG | 4 cut(s) | 141, 156, 228, 617 |
| BstV1I | GCAGC | 3 cut(s) | 366, 753, 808 |
| BstV2I | GAAGAC | 1 cut(s) | 290 |
| BsuRI | GGCC | 8 cut(s) | 446, 479, 524, 590, 600, 837, 860, 938 |
| BtgI | CCRYGG | 2 cut(s) | 219, 925 |
| BtrI | CACGTC | 1 cut(s) | 574 |
| BtsCI | GGATG | 1 cut(s) | 508 |
| BtsI | GCAGTG | 1 cut(s) | 426 |
| BtsIMutI | CAGTG | 2 cut(s) | 426, 480 |
| BtuMI | TCGCGA | 1 cut(s) | 141 |
| Cac8I | GCNNGC | 9 cut(s) | 196, 273, 412, 526, 530, 671, 839, 932, 936 |
| CfoI | GCGC | 3 cut(s) | 230, 313, 491 |
| Cfr13I | GGNCC | 9 cut(s) | 18, 60, 223, 478, 522, 523, 835, 859, 955 |
| Cfr9I | CCCGGG | 1 cut(s) | 801 |
| CseI | GACGC | 4 cut(s) | 212, 429, 777, 875 |
| Csp6I | GTAC | 6 cut(s) | 127, 259, 619, 658, 704, 738 |
| CviAII | CATG | 3 cut(s) | 220, 256, 346 |
| CviQI | GTAC | 6 cut(s) | 127, 259, 619, 658, 704, 738 |
| DdeI | CTNAG | 6 cut(s) | 279, 314, 324, 426, 691, 818 |
| DpnI | GATC | 1 cut(s) | 515 |
| DpnII | GATC | 1 cut(s) | 513 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 611 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 611 |
| EaeI | YGGCCR | 3 cut(s) | 444, 588, 936 |
| Eam1104I | CTCTTC | 2 cut(s) | 141, 489 |
| EarI | CTCTTC | 2 cut(s) | 141, 489 |
| EciI | GGCGGA | 1 cut(s) | 168 |
| Ecl136II | GAGCTC | 1 cut(s) | 817 |
| Eco130I | CCWWGG | 1 cut(s) | 219 |
| Eco24I | GRGCYC | 2 cut(s) | 526, 819 |
| Eco31I | GGTCTC | 2 cut(s) | 245, 296 |
| Eco47I | GGWCC | 4 cut(s) | 18, 60, 223, 955 |
| Eco53kI | GAGCTC | 1 cut(s) | 817 |
| Eco57I | CTGAAG | 1 cut(s) | 718 |
| Eco88I | CYCGRG | 2 cut(s) | 557, 801 |
| EcoICRI | GAGCTC | 1 cut(s) | 817 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 896 |
| EcoO109I | RGGNCCY | 2 cut(s) | 522, 955 |
| EcoRII | CCWGG | 5 cut(s) | 51, 246, 306, 565, 861 |
| EcoT14I | CCWWGG | 1 cut(s) | 219 |
| EcoT38I | GRGCYC | 2 cut(s) | 526, 819 |
| ErhI | CCWWGG | 1 cut(s) | 219 |
| FaeI | CATG | 3 cut(s) | 223, 259, 349 |
| FaiI | YATR | 4 cut(s) | 221, 257, 347, 363 |
| FaqI | GGGAC | 4 cut(s) | 584, 662, 860, 968 |
| FatI | CATG | 3 cut(s) | 219, 255, 345 |
| FauI | CCCGC | 5 cut(s) | 49, 109, 533, 804, 945 |
| FblI | GTMKAC | 1 cut(s) | 710 |
| FokI | GGATG | 1 cut(s) | 515 |
| FriOI | GRGCYC | 2 cut(s) | 526, 819 |
| FspBI | CTAG | 2 cut(s) | 299, 602 |
| GlaI | GCGC | 3 cut(s) | 229, 312, 490 |
| GsaI | CCCAGC | 2 cut(s) | 484, 680 |
| GsuI | CTGGAG | 1 cut(s) | 269 |
| HaeII | RGCGCY | 1 cut(s) | 314 |
| HaeIII | GGCC | 8 cut(s) | 446, 479, 524, 590, 600, 837, 860, 938 |
| HapII | CCGG | 3 cut(s) | 332, 451, 802 |
| HgaI | GACGC | 4 cut(s) | 212, 429, 777, 875 |
| HhaI | GCGC | 3 cut(s) | 230, 313, 491 |
| Hin1I | GRCGYC | 2 cut(s) | 204, 788 |
| Hin1II | CATG | 3 cut(s) | 223, 259, 349 |
| Hin6I | GCGC | 3 cut(s) | 228, 311, 489 |
| HinP1I | GCGC | 3 cut(s) | 228, 311, 489 |
| HincII | GTYRAC | 2 cut(s) | 711, 721 |
| HindII | GTYRAC | 2 cut(s) | 711, 721 |
| HinfI | GANTC | 2 cut(s) | 136, 605 |
| HpaII | CCGG | 3 cut(s) | 332, 451, 802 |
| HphI | GGTGA | 4 cut(s) | 304, 383, 409, 653 |
| Hpy166II | GTNNAC | 6 cut(s) | 18, 295, 463, 644, 711, 721 |
| Hpy188I | TCNGA | 6 cut(s) | 97, 113, 170, 282, 325, 429 |
| Hpy188III | TCNNGA | 2 cut(s) | 140, 631 |
| Hpy8I | GTNNAC | 6 cut(s) | 18, 295, 463, 644, 711, 721 |
| Hpy99I | CGWCG | 7 cut(s) | 40, 82, 445, 617, 793, 891, 944 |
| HpyAV | CCTTC | 2 cut(s) | 532, 742 |
| HpyCH4III | ACNGT | 5 cut(s) | 289, 388, 475, 708, 908 |
| HpyCH4IV | ACGT | 4 cut(s) | 80, 163, 573, 912 |
| HpyCH4V | TGCA | 5 cut(s) | 463, 669, 743, 769, 841 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 346, 416, 460, 548, 584 |
| HpyF3I | CTNAG | 6 cut(s) | 279, 314, 324, 426, 691, 818 |
| HpySE526I | ACGT | 4 cut(s) | 80, 163, 573, 912 |
| Hsp92I | GRCGYC | 2 cut(s) | 204, 788 |
| Hsp92II | CATG | 3 cut(s) | 223, 259, 349 |
| HspAI | GCGC | 3 cut(s) | 228, 311, 489 |
| Kzo9I | GATC | 1 cut(s) | 513 |
| LmnI | GCTCC | 4 cut(s) | 73, 486, 814, 883 |
| Lsp1109I | GCAGC | 3 cut(s) | 366, 753, 808 |
| LweI | GCATC | 1 cut(s) | 910 |
| MaeI | CTAG | 2 cut(s) | 299, 602 |
| MaeII | ACGT | 4 cut(s) | 80, 163, 573, 912 |
| MaeIII | GTNAC | 4 cut(s) | 200, 371, 397, 908 |
| MalI | GATC | 1 cut(s) | 515 |
| MbiI | CCGCTC | 4 cut(s) | 116, 597, 811, 952 |
| MboI | GATC | 1 cut(s) | 513 |
| MboII | GAAGA | 5 cut(s) | 155, 158, 295, 506, 547 |
| MhlI | GDGCHC | 4 cut(s) | 465, 526, 753, 819 |
| MluCI | AATT | 1 cut(s) | 234 |
| MlyI | GAGTC | 2 cut(s) | 130, 599 |
| MmeI | TCCRAC | 2 cut(s) | 75, 87 |
| MseI | TTAA | 1 cut(s) | 90 |
| MspA1I | CMGCKG | 1 cut(s) | 484 |
| MspI | CCGG | 3 cut(s) | 332, 451, 802 |
| MspR9I | CCNGG | 8 cut(s) | 53, 248, 308, 451, 567, 802, 803, 863 |
| MvaI | CCWGG | 5 cut(s) | 53, 248, 308, 567, 863 |
| MvnI | CGCG | 4 cut(s) | 141, 156, 228, 617 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 346, 416, 460, 548, 584 |
| NciI | CCSGG | 3 cut(s) | 451, 802, 803 |
| NcoI | CCATGG | 1 cut(s) | 219 |
| NdeII | GATC | 1 cut(s) | 513 |
| NlaIII | CATG | 3 cut(s) | 223, 259, 349 |
| NlaIV | GGNNCC | 7 cut(s) | 61, 75, 330, 523, 524, 564, 956 |
| NmeAIII | GCCGAG | 2 cut(s) | 207, 649 |
| NmuCI | GTSAC | 4 cut(s) | 200, 371, 397, 908 |
| NruI | TCGCGA | 1 cut(s) | 141 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 160, 621 |
| Pfl23II | CGTACG | 1 cut(s) | 618 |
| PfoI | TCCNGGA | 1 cut(s) | 246 |
| PleI | GAGTC | 2 cut(s) | 130, 599 |
| PpsI | GAGTC | 2 cut(s) | 130, 599 |
| Ppu21I | YACGTR | 1 cut(s) | 164 |
| PpuMI | RGGWCCY | 1 cut(s) | 955 |
| Psp124BI | GAGCTC | 1 cut(s) | 819 |
| Psp5II | RGGWCCY | 1 cut(s) | 955 |
| Psp6I | CCWGG | 5 cut(s) | 51, 246, 306, 565, 861 |
| PspFI | CCCAGC | 2 cut(s) | 480, 676 |
| PspGI | CCWGG | 5 cut(s) | 51, 246, 306, 565, 861 |
| PspLI | CGTACG | 1 cut(s) | 618 |
| PspN4I | GGNNCC | 7 cut(s) | 61, 75, 330, 523, 524, 564, 956 |
| PspOMI | GGGCCC | 1 cut(s) | 522 |
| PspPI | GGNCC | 9 cut(s) | 18, 60, 223, 478, 522, 523, 835, 859, 955 |
| PspPPI | RGGWCCY | 1 cut(s) | 955 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 611, 643 |
| PstI | CTGCAG | 1 cut(s) | 843 |
| RruI | TCGCGA | 1 cut(s) | 141 |
| RsaI | GTAC | 6 cut(s) | 128, 260, 620, 659, 705, 739 |
| RsaNI | GTAC | 6 cut(s) | 127, 259, 619, 658, 704, 738 |
| SacI | GAGCTC | 1 cut(s) | 819 |
| SalI | GTCGAC | 1 cut(s) | 709 |
| SaqAI | TTAA | 1 cut(s) | 90 |
| Sau3AI | GATC | 1 cut(s) | 513 |
| Sau96I | GGNCC | 9 cut(s) | 18, 60, 223, 478, 522, 523, 835, 859, 955 |
| ScaI | AGTACT | 1 cut(s) | 739 |
| SchI | GAGTC | 2 cut(s) | 130, 599 |
| ScrFI | CCNGG | 8 cut(s) | 53, 248, 308, 451, 567, 802, 803, 863 |
| SduI | GDGCHC | 4 cut(s) | 465, 526, 753, 819 |
| SfaNI | GCATC | 1 cut(s) | 910 |
| SfcI | CTRYAG | 2 cut(s) | 545, 839 |
| SinI | GGWCC | 4 cut(s) | 18, 60, 223, 955 |
| SmaI | CCCGGG | 1 cut(s) | 803 |
| Sse9I | AATT | 1 cut(s) | 234 |
| SspMI | CTAG | 2 cut(s) | 299, 602 |
| SstI | GAGCTC | 1 cut(s) | 819 |
| StyD4I | CCNGG | 8 cut(s) | 51, 246, 306, 449, 565, 800, 801, 861 |
| StyI | CCWWGG | 1 cut(s) | 219 |
| TaaI | ACNGT | 5 cut(s) | 289, 388, 475, 708, 908 |
| TaiI | ACGT | 4 cut(s) | 83, 166, 576, 915 |
| TaqI | TCGA | 2 cut(s) | 710, 791 |
| TasI | AATT | 1 cut(s) | 234 |
| TatI | WGTACW | 1 cut(s) | 737 |
| TauI | GCSGC | 8 cut(s) | 278, 352, 410, 590, 600, 676, 690, 788 |
| Tru1I | TTAA | 1 cut(s) | 90 |
| Tru9I | TTAA | 1 cut(s) | 90 |
| TscAI | CASTG | 2 cut(s) | 426, 480 |
| TseFI | GTSAC | 4 cut(s) | 200, 371, 397, 908 |
| TseI | GCWGC | 3 cut(s) | 379, 766, 796 |
| Tsp45I | GTSAC | 4 cut(s) | 200, 371, 397, 908 |
| TspMI | CCCGGG | 1 cut(s) | 801 |
| TspRI | CASTG | 2 cut(s) | 426, 480 |
| VneI | GTGCAC | 1 cut(s) | 461 |
| VpaK11BI | GGWCC | 4 cut(s) | 18, 60, 223, 955 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 896 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 362 |
| XmaI | CCCGGG | 1 cut(s) | 801 |
| XmiI | GTMKAC | 1 cut(s) | 710 |
| XspI | CTAG | 2 cut(s) | 299, 602 |
| ZrmI | AGTACT | 1 cut(s) | 739 |