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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1399 |
| AatII | GACGTC | 2 cut(s) | 942, 1566 |
| Acc65I | GGTACC | 3 cut(s) | 215, 1355, 1478 |
| AccB1I | GGYRCC | 5 cut(s) | 215, 601, 1262, 1355, 1478 |
| AccBSI | CCGCTC | 6 cut(s) | 347, 464, 664, 904, 1033, 1362 |
| AccII | CGCG | 4 cut(s) | 945, 970, 993, 1082 |
| AcoI | YGGCCR | 9 cut(s) | 73, 262, 324, 379, 441, 516, 912, 960, 1155 |
| AcsI | RAATTY | 1 cut(s) | 238 |
| AcuI | CTGAAG | 3 cut(s) | 736, 1158, 1572 |
| AcvI | CACGTG | 1 cut(s) | 1442 |
| AcyI | GRCGYC | 5 cut(s) | 540, 939, 1263, 1541, 1563 |
| AfaI | GTAC | 4 cut(s) | 217, 1147, 1357, 1480 |
| AflIII | ACRYGT | 3 cut(s) | 991, 1245, 1441 |
| AgsI | TTSAA | 4 cut(s) | 40, 1169, 1177, 1252 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1494 |
| AjiI | CACGTC | 2 cut(s) | 297, 414 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 263, 295, 324, 356, 441, 473 |
| AleI | CACNNNNGTG | 2 cut(s) | 299, 416 |
| Alw21I | GWGCWC | 1 cut(s) | 837 |
| Alw26I | GTCTC | 5 cut(s) | 174, 860, 1000, 1319, 1481 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 820 |
| Ama87I | CYCGRG | 4 cut(s) | 1230, 1363, 1467, 1506 |
| ApaI | GGGCCC | 1 cut(s) | 1231 |
| ApeKI | GCWGC | 7 cut(s) | 803, 814, 1024, 1069, 1151, 1368, 1547 |
| ApoI | RAATTY | 1 cut(s) | 238 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 32 |
| Asp718I | GGTACC | 3 cut(s) | 215, 1355, 1478 |
| AspLEI | GCGC | 3 cut(s) | 643, 1265, 1462 |
| AspS9I | GGNCC | 6 cut(s) | 559, 1227, 1228, 1382, 1401, 1512 |
| AsuC2I | CCSGG | 4 cut(s) | 1231, 1232, 1468, 1469 |
| AsuHPI | GGTGA | 3 cut(s) | 144, 671, 1127 |
| AvaI | CYCGRG | 4 cut(s) | 1230, 1363, 1467, 1506 |
| AvaII | GGWCC | 2 cut(s) | 1401, 1512 |
| BaeGI | GKGCMC | 1 cut(s) | 1231 |
| BalI | TGGCCA | 3 cut(s) | 75, 914, 962 |
| BanI | GGYRCC | 5 cut(s) | 215, 601, 1262, 1355, 1478 |
| BanII | GRGCYC | 2 cut(s) | 837, 1231 |
| BbrPI | CACGTG | 1 cut(s) | 1442 |
| BbsI | GAAGAC | 2 cut(s) | 1205, 1566 |
| Bbv12I | GWGCWC | 1 cut(s) | 837 |
| BbvI | GCAGC | 7 cut(s) | 815, 826, 1011, 1081, 1138, 1380, 1534 |
| BccI | CCATC | 3 cut(s) | 650, 687, 1469 |
| BceAI | ACGGC | 4 cut(s) | 593, 628, 707, 747 |
| BciVI | GTATCC | 1 cut(s) | 1325 |
| BcnI | CCSGG | 4 cut(s) | 1231, 1232, 1468, 1469 |
| BcoDI | GTCTC | 5 cut(s) | 174, 860, 1000, 1319, 1481 |
| BfaI | CTAG | 3 cut(s) | 83, 105, 710 |
| BfmI | CTRYAG | 2 cut(s) | 477, 1025 |
| BfoI | RGCGCY | 1 cut(s) | 1266 |
| BfuI | GTATCC | 1 cut(s) | 1325 |
| Bme1390I | CCNGG | 4 cut(s) | 1231, 1232, 1468, 1469 |
| Bme18I | GGWCC | 2 cut(s) | 1401, 1512 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1494 |
| BmeT110I | CYCGRG | 4 cut(s) | 1230, 1363, 1467, 1506 |
| BmgBI | CACGTC | 2 cut(s) | 297, 414 |
| BmgT120I | GGNCC | 6 cut(s) | 559, 1227, 1228, 1382, 1401, 1512 |
| BmrFI | CCNGG | 4 cut(s) | 1231, 1232, 1468, 1469 |
| BmrI | ACTGGG | 1 cut(s) | 1488 |
| BmuI | ACTGGG | 1 cut(s) | 1488 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1331 |
| BpiI | GAAGAC | 2 cut(s) | 1205, 1566 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 608, 640 |
| BpmI | CTGGAG | 3 cut(s) | 842, 1371, 1475 |
| Bpu10I | CCTNAGC | 1 cut(s) | 836 |
| BpuEI | CTTGAG | 3 cut(s) | 158, 209, 248 |
| BpuMI | CCSGG | 4 cut(s) | 1231, 1232, 1468, 1469 |
| Bsa29I | ATCGAT | 1 cut(s) | 1532 |
| BsaAI | YACGTR | 1 cut(s) | 1442 |
| BsaHI | GRCGYC | 5 cut(s) | 540, 939, 1263, 1541, 1563 |
| BsaI | GGTCTC | 2 cut(s) | 174, 860 |
| BsaJI | CCNNGG | 8 cut(s) | 22, 850, 915, 943, 1080, 1209, 1230, 1467 |
| BsaWI | WCCGGW | 1 cut(s) | 524 |
| Bse118I | RCCGGY | 3 cut(s) | 713, 1303, 1543 |
| Bse1I | ACTGG | 6 cut(s) | 31, 51, 76, 217, 894, 1494 |
| BseCI | ATCGAT | 1 cut(s) | 1532 |
| BseDI | CCNNGG | 8 cut(s) | 22, 850, 915, 943, 1080, 1209, 1230, 1467 |
| BseGI | GGATG | 3 cut(s) | 1095, 1387, 1480 |
| BseMII | CTCAG | 3 cut(s) | 850, 1121, 1314 |
| BseNI | ACTGG | 6 cut(s) | 31, 51, 76, 217, 894, 1494 |
| BseSI | GKGCMC | 1 cut(s) | 1231 |
| BseX3I | CGGCCG | 1 cut(s) | 1155 |
| BseXI | GCAGC | 7 cut(s) | 815, 826, 1011, 1081, 1138, 1380, 1534 |
| BseYI | CCCAGC | 4 cut(s) | 17, 694, 1108, 1345 |
| BsgI | GTGCAG | 1 cut(s) | 1088 |
| Bsh1236I | CGCG | 4 cut(s) | 945, 970, 993, 1082 |
| Bsh1285I | CGRYCG | 2 cut(s) | 1158, 1532 |
| BshNI | GGYRCC | 5 cut(s) | 215, 601, 1262, 1355, 1478 |
| BshVI | ATCGAT | 1 cut(s) | 1532 |
| BsiEI | CGRYCG | 2 cut(s) | 1158, 1532 |
| BsiHKAI | GWGCWC | 1 cut(s) | 837 |
| BsiHKCI | CYCGRG | 4 cut(s) | 1230, 1363, 1467, 1506 |
| BslFI | GGGAC | 4 cut(s) | 81, 795, 986, 1387 |
| BsmAI | GTCTC | 5 cut(s) | 174, 860, 1000, 1319, 1481 |
| BsmBI | CGTCTC | 1 cut(s) | 1000 |
| BsmFI | GGGAC | 4 cut(s) | 81, 795, 986, 1387 |
| Bso31I | GGTCTC | 2 cut(s) | 174, 860 |
| BsoBI | CYCGRG | 4 cut(s) | 1230, 1363, 1467, 1506 |
| Bsp120I | GGGCCC | 1 cut(s) | 1227 |
| Bsp1286I | GDGCHC | 2 cut(s) | 837, 1231 |
| Bsp143I | GATC | 2 cut(s) | 1014, 1529 |
| BspCNI | CTCAG | 3 cut(s) | 849, 1122, 1315 |
| BspDI | ATCGAT | 1 cut(s) | 1532 |
| BspFNI | CGCG | 4 cut(s) | 945, 970, 993, 1082 |
| BspHI | TCATGA | 1 cut(s) | 648 |
| BspMAI | CTGCAG | 1 cut(s) | 1029 |
| BspT107I | GGYRCC | 5 cut(s) | 215, 601, 1262, 1355, 1478 |
| BspTNI | GGTCTC | 2 cut(s) | 174, 860 |
| BsrBI | CCGCTC | 6 cut(s) | 347, 464, 664, 904, 1033, 1362 |
| BsrFI | RCCGGY | 3 cut(s) | 713, 1303, 1543 |
| BsrI | ACTGG | 6 cut(s) | 31, 51, 76, 217, 894, 1494 |
| BssAI | RCCGGY | 3 cut(s) | 713, 1303, 1543 |
| BssECI | CCNNGG | 8 cut(s) | 22, 850, 915, 943, 1080, 1209, 1230, 1467 |
| BssMI | GATC | 2 cut(s) | 1014, 1529 |
| BssNI | GRCGYC | 5 cut(s) | 540, 939, 1263, 1541, 1563 |
| BssT1I | CCWWGG | 3 cut(s) | 22, 850, 915 |
| Bst4CI | ACNGT | 2 cut(s) | 362, 478 |
| Bst6I | CTCTTC | 2 cut(s) | 45, 680 |
| BstACI | GRCGYC | 5 cut(s) | 540, 939, 1263, 1541, 1563 |
| BstBAI | YACGTR | 1 cut(s) | 1442 |
| BstC8I | GCNNGC | 4 cut(s) | 950, 1305, 1341, 1545 |
| BstDEI | CTNAG | 3 cut(s) | 836, 1130, 1323 |
| BstDSI | CCRYGG | 2 cut(s) | 943, 1080 |
| BstEII | GGTNACC | 2 cut(s) | 527, 1120 |
| BstENI | CCTNNNNNAGG | 3 cut(s) | 824, 1025, 1430 |
| BstF5I | GGATG | 3 cut(s) | 1095, 1387, 1480 |
| BstFNI | CGCG | 4 cut(s) | 945, 970, 993, 1082 |
| BstH2I | RGCGCY | 1 cut(s) | 1266 |
| BstHHI | GCGC | 3 cut(s) | 643, 1265, 1462 |
| BstKTI | GATC | 2 cut(s) | 1017, 1532 |
| BstMAI | GTCTC | 5 cut(s) | 174, 860, 1000, 1319, 1481 |
| BstMBI | GATC | 2 cut(s) | 1014, 1529 |
| BstMCI | CGRYCG | 2 cut(s) | 1158, 1532 |
| BstNSI | RCATGY | 1 cut(s) | 1249 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1331 |
| BstPI | GGTNACC | 2 cut(s) | 527, 1120 |
| BstSCI | CCNGG | 4 cut(s) | 1229, 1230, 1466, 1467 |
| BstSFI | CTRYAG | 2 cut(s) | 477, 1025 |
| BstSLI | GKGCMC | 1 cut(s) | 1231 |
| BstUI | CGCG | 4 cut(s) | 945, 970, 993, 1082 |
| BstV1I | GCAGC | 7 cut(s) | 815, 826, 1011, 1081, 1138, 1380, 1534 |
| BstV2I | GAAGAC | 2 cut(s) | 1205, 1566 |
| BstZI | CGGCCG | 1 cut(s) | 1155 |
| Bsu15I | ATCGAT | 1 cut(s) | 1532 |
| BsuI | GTATCC | 1 cut(s) | 1325 |
| BsuTUI | ATCGAT | 1 cut(s) | 1532 |
| BtgI | CCRYGG | 2 cut(s) | 943, 1080 |
| BtrI | CACGTC | 2 cut(s) | 297, 414 |
| BtsCI | GGATG | 3 cut(s) | 1095, 1387, 1480 |
| BtsIMutI | CAGTG | 3 cut(s) | 44, 619, 1202 |
| Cac8I | GCNNGC | 4 cut(s) | 950, 1305, 1341, 1545 |
| CaiI | CAGNNNCTG | 1 cut(s) | 820 |
| CciI | TCATGA | 1 cut(s) | 648 |
| CciNI | GCGGCCGC | 1 cut(s) | 1155 |
| CfoI | GCGC | 3 cut(s) | 643, 1265, 1462 |
| Cfr10I | RCCGGY | 3 cut(s) | 713, 1303, 1543 |
| Cfr13I | GGNCC | 6 cut(s) | 559, 1227, 1228, 1382, 1401, 1512 |
| Cfr42I | CCGCGG | 2 cut(s) | 946, 1083 |
| Cfr9I | CCCGGG | 2 cut(s) | 1230, 1467 |
| ClaI | ATCGAT | 1 cut(s) | 1532 |
| CseI | GACGC | 8 cut(s) | 262, 379, 529, 795, 982, 1272, 1304, 1549 |
| Csp6I | GTAC | 4 cut(s) | 216, 1146, 1356, 1479 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 564, 599 |
| CviAII | CATG | 4 cut(s) | 366, 649, 799, 1246 |
| CviQI | GTAC | 4 cut(s) | 216, 1146, 1356, 1479 |
| DdeI | CTNAG | 3 cut(s) | 836, 1130, 1323 |
| DinI | GGCGCC | 1 cut(s) | 1264 |
| DpnI | GATC | 2 cut(s) | 1016, 1531 |
| DpnII | GATC | 2 cut(s) | 1014, 1529 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1399 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1494 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1399 |
| EaeI | YGGCCR | 9 cut(s) | 73, 262, 324, 379, 441, 516, 912, 960, 1155 |
| EagI | CGGCCG | 1 cut(s) | 1155 |
| Eam1104I | CTCTTC | 2 cut(s) | 45, 680 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1494 |
| EarI | CTCTTC | 2 cut(s) | 45, 680 |
| EciI | GGCGGA | 4 cut(s) | 887, 908, 935, 1487 |
| Ecl136II | GAGCTC | 1 cut(s) | 835 |
| EclXI | CGGCCG | 1 cut(s) | 1155 |
| Eco130I | CCWWGG | 3 cut(s) | 22, 850, 915 |
| Eco24I | GRGCYC | 2 cut(s) | 837, 1231 |
| Eco31I | GGTCTC | 2 cut(s) | 174, 860 |
| Eco47I | GGWCC | 2 cut(s) | 1401, 1512 |
| Eco52I | CGGCCG | 1 cut(s) | 1155 |
| Eco53kI | GAGCTC | 1 cut(s) | 835 |
| Eco57I | CTGAAG | 3 cut(s) | 736, 1158, 1572 |
| Eco72I | CACGTG | 1 cut(s) | 1442 |
| Eco88I | CYCGRG | 4 cut(s) | 1230, 1363, 1467, 1506 |
| Eco91I | GGTNACC | 2 cut(s) | 527, 1120 |
| EcoICRI | GAGCTC | 1 cut(s) | 835 |
| EcoNI | CCTNNNNNAGG | 3 cut(s) | 824, 1025, 1430 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1227, 1401 |
| EcoO65I | GGTNACC | 2 cut(s) | 527, 1120 |
| EcoT14I | CCWWGG | 3 cut(s) | 22, 850, 915 |
| EcoT38I | GRGCYC | 2 cut(s) | 837, 1231 |
| EgeI | GGCGCC | 1 cut(s) | 1264 |
| EheI | GGCGCC | 1 cut(s) | 1264 |
| ErhI | CCWWGG | 3 cut(s) | 22, 850, 915 |
| Esp3I | CGTCTC | 1 cut(s) | 1000 |
| FaeI | CATG | 4 cut(s) | 369, 652, 802, 1249 |
| FaqI | GGGAC | 4 cut(s) | 81, 795, 986, 1387 |
| FatI | CATG | 4 cut(s) | 365, 648, 798, 1245 |
| FokI | GGATG | 3 cut(s) | 1102, 1374, 1487 |
| FriOI | GRGCYC | 2 cut(s) | 837, 1231 |
| FspBI | CTAG | 3 cut(s) | 83, 105, 710 |
| GlaI | GCGC | 3 cut(s) | 642, 1264, 1461 |
| GsaI | CCCAGC | 4 cut(s) | 21, 698, 1112, 1349 |
| GsuI | CTGGAG | 3 cut(s) | 842, 1371, 1475 |
| HaeII | RGCGCY | 1 cut(s) | 1266 |
| HgaI | GACGC | 8 cut(s) | 262, 379, 529, 795, 982, 1272, 1304, 1549 |
| HhaI | GCGC | 3 cut(s) | 643, 1265, 1462 |
| Hin1I | GRCGYC | 5 cut(s) | 540, 939, 1263, 1541, 1563 |
| Hin1II | CATG | 4 cut(s) | 369, 652, 802, 1249 |
| Hin6I | GCGC | 3 cut(s) | 641, 1263, 1460 |
| HinP1I | GCGC | 3 cut(s) | 641, 1263, 1460 |
| HinfI | GANTC | 7 cut(s) | 244, 511, 623, 1076, 1411, 1489, 1525 |
| HphI | GGTGA | 3 cut(s) | 144, 671, 1127 |
| Hpy188I | TCNGA | 5 cut(s) | 1392, 1432, 1448, 1500, 1516 |
| Hpy188III | TCNNGA | 6 cut(s) | 83, 98, 188, 649, 859, 1454 |
| Hpy99I | CGWCG | 5 cut(s) | 545, 733, 811, 1396, 1568 |
| HpyAV | CCTTC | 9 cut(s) | 293, 410, 539, 550, 760, 1133, 1213, 1252, 1391 |
| HpyCH4III | ACNGT | 2 cut(s) | 362, 478 |
| HpyCH4IV | ACGT | 7 cut(s) | 94, 296, 413, 939, 957, 1441, 1563 |
| HpyCH4V | TGCA | 3 cut(s) | 575, 1027, 1069 |
| HpyF3I | CTNAG | 3 cut(s) | 836, 1130, 1323 |
| HpySE526I | ACGT | 7 cut(s) | 94, 296, 413, 939, 957, 1441, 1563 |
| Hsp92I | GRCGYC | 5 cut(s) | 540, 939, 1263, 1541, 1563 |
| Hsp92II | CATG | 4 cut(s) | 369, 652, 802, 1249 |
| HspAI | GCGC | 3 cut(s) | 641, 1263, 1460 |
| KasI | GGCGCC | 1 cut(s) | 1262 |
| KflI | GGGWCCC | 1 cut(s) | 1401 |
| KpnI | GGTACC | 3 cut(s) | 219, 1359, 1482 |
| KroI | GCCGGC | 2 cut(s) | 1303, 1543 |
| KroNI | GCCGGC | 2 cut(s) | 1305, 1545 |
| KspI | CCGCGG | 2 cut(s) | 946, 1083 |
| Kzo9I | GATC | 2 cut(s) | 1014, 1529 |
| LmnI | GCTCC | 6 cut(s) | 344, 461, 574, 832, 1006, 1030 |
| Lsp1109I | GCAGC | 7 cut(s) | 815, 826, 1011, 1081, 1138, 1380, 1534 |
| MaeI | CTAG | 3 cut(s) | 83, 105, 710 |
| MaeII | ACGT | 7 cut(s) | 94, 296, 413, 939, 957, 1441, 1563 |
| MaeIII | GTNAC | 8 cut(s) | 90, 292, 409, 527, 926, 1120, 1284, 1437 |
| MalI | GATC | 2 cut(s) | 1016, 1531 |
| MbiI | CCGCTC | 6 cut(s) | 347, 464, 664, 904, 1033, 1362 |
| MboI | GATC | 2 cut(s) | 1014, 1529 |
| MboII | GAAGA | 7 cut(s) | 28, 62, 565, 667, 854, 1210, 1571 |
| MfeI | CAATTG | 1 cut(s) | 735 |
| MhlI | GDGCHC | 2 cut(s) | 837, 1231 |
| MlsI | TGGCCA | 3 cut(s) | 75, 914, 962 |
| MluCI | AATT | 4 cut(s) | 108, 238, 471, 735 |
| MluI | ACGCGT | 1 cut(s) | 991 |
| MluNI | TGGCCA | 3 cut(s) | 75, 914, 962 |
| Mly113I | GGCGCC | 1 cut(s) | 1263 |
| MlyI | GAGTC | 6 cut(s) | 238, 617, 1085, 1405, 1483, 1534 |
| MmeI | TCCRAC | 6 cut(s) | 984, 1410, 1415, 1426, 1523, 1539 |
| Mox20I | TGGCCA | 3 cut(s) | 75, 914, 962 |
| MroNI | GCCGGC | 2 cut(s) | 1303, 1543 |
| MroXI | GAANNNNTTC | 1 cut(s) | 32 |
| MscI | TGGCCA | 3 cut(s) | 75, 914, 962 |
| MseI | TTAA | 2 cut(s) | 111, 1194 |
| MslI | CAYNNNNRTG | 4 cut(s) | 157, 299, 416, 1064 |
| Msp20I | TGGCCA | 3 cut(s) | 75, 914, 962 |
| MspA1I | CMGCKG | 8 cut(s) | 945, 1072, 1082, 1151, 1163, 1349, 1371, 1578 |
| MspR9I | CCNGG | 4 cut(s) | 1231, 1232, 1468, 1469 |
| MunI | CAATTG | 1 cut(s) | 735 |
| MvnI | CGCG | 4 cut(s) | 945, 970, 993, 1082 |
| NaeI | GCCGGC | 2 cut(s) | 1305, 1545 |
| NarI | GGCGCC | 1 cut(s) | 1263 |
| NciI | CCSGG | 4 cut(s) | 1231, 1232, 1468, 1469 |
| NdeII | GATC | 2 cut(s) | 1014, 1529 |
| NgoMIV | GCCGGC | 2 cut(s) | 1303, 1543 |
| NlaIII | CATG | 4 cut(s) | 369, 652, 802, 1249 |
| NmeAIII | GCCGAG | 3 cut(s) | 658, 737, 925 |
| NmuCI | GTSAC | 5 cut(s) | 292, 409, 926, 1284, 1437 |
| NotI | GCGGCCGC | 1 cut(s) | 1155 |
| NspI | RCATGY | 1 cut(s) | 1249 |
| OliI | CACNNNNGTG | 2 cut(s) | 299, 416 |
| PaeR7I | CTCGAG | 1 cut(s) | 1506 |
| PagI | TCATGA | 1 cut(s) | 648 |
| PciI | ACATGT | 1 cut(s) | 1245 |
| PdiI | GCCGGC | 2 cut(s) | 1305, 1545 |
| PdmI | GAANNNNTTC | 1 cut(s) | 32 |
| PfeI | GAWTC | 1 cut(s) | 511 |
| Ple19I | CGATCG | 1 cut(s) | 1532 |
| PleI | GAGTC | 6 cut(s) | 238, 617, 1084, 1405, 1483, 1533 |
| PluTI | GGCGCC | 1 cut(s) | 1266 |
| PmaCI | CACGTG | 1 cut(s) | 1442 |
| PmlI | CACGTG | 1 cut(s) | 1442 |
| PpsI | GAGTC | 6 cut(s) | 238, 617, 1084, 1405, 1483, 1533 |
| Ppu21I | YACGTR | 1 cut(s) | 1442 |
| PpuMI | RGGWCCY | 1 cut(s) | 1401 |
| PscI | ACATGT | 1 cut(s) | 1245 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1331 |
| Psp124BI | GAGCTC | 1 cut(s) | 837 |
| Psp5II | RGGWCCY | 1 cut(s) | 1401 |
| PspCI | CACGTG | 1 cut(s) | 1442 |
| PspEI | GGTNACC | 2 cut(s) | 527, 1120 |
| PspFI | CCCAGC | 4 cut(s) | 17, 694, 1108, 1345 |
| PspOMI | GGGCCC | 1 cut(s) | 1227 |
| PspPI | GGNCC | 6 cut(s) | 559, 1227, 1228, 1382, 1401, 1512 |
| PspPPI | RGGWCCY | 1 cut(s) | 1401 |
| PspXI | VCTCGAGB | 1 cut(s) | 1506 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 629, 661 |
| PstI | CTGCAG | 1 cut(s) | 1029 |
| PstNI | CAGNNNCTG | 1 cut(s) | 820 |
| PvuI | CGATCG | 1 cut(s) | 1532 |
| PvuII | CAGCTG | 1 cut(s) | 1349 |
| RsaI | GTAC | 4 cut(s) | 217, 1147, 1357, 1480 |
| RsaNI | GTAC | 4 cut(s) | 216, 1146, 1356, 1479 |
| RseI | CAYNNNNRTG | 4 cut(s) | 157, 299, 416, 1064 |
| SacI | GAGCTC | 1 cut(s) | 837 |
| SacII | CCGCGG | 2 cut(s) | 946, 1083 |
| SaqAI | TTAA | 2 cut(s) | 111, 1194 |
| Sau3AI | GATC | 2 cut(s) | 1014, 1529 |
| Sau96I | GGNCC | 6 cut(s) | 559, 1227, 1228, 1382, 1401, 1512 |
| SchI | GAGTC | 6 cut(s) | 238, 617, 1085, 1405, 1483, 1534 |
| ScrFI | CCNGG | 4 cut(s) | 1231, 1232, 1468, 1469 |
| SduI | GDGCHC | 2 cut(s) | 837, 1231 |
| SfcI | CTRYAG | 2 cut(s) | 477, 1025 |
| SfoI | GGCGCC | 1 cut(s) | 1264 |
| Sfr274I | CTCGAG | 1 cut(s) | 1506 |
| Sfr303I | CCGCGG | 2 cut(s) | 946, 1083 |
| SgrBI | CCGCGG | 2 cut(s) | 946, 1083 |
| SinI | GGWCC | 2 cut(s) | 1401, 1512 |
| SlaI | CTCGAG | 1 cut(s) | 1506 |
| SmaI | CCCGGG | 2 cut(s) | 1232, 1469 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 157, 299, 416, 1064 |
| SmlI | CTYRAG | 4 cut(s) | 173, 188, 227, 1506 |
| SmoI | CTYRAG | 4 cut(s) | 173, 188, 227, 1506 |
| SrfI | GCCCGGGC | 1 cut(s) | 1232 |
| Sse9I | AATT | 4 cut(s) | 108, 238, 471, 735 |
| SspDI | GGCGCC | 1 cut(s) | 1262 |
| SspMI | CTAG | 3 cut(s) | 83, 105, 710 |
| SstI | GAGCTC | 1 cut(s) | 837 |
| StyD4I | CCNGG | 4 cut(s) | 1229, 1230, 1466, 1467 |
| StyI | CCWWGG | 3 cut(s) | 22, 850, 915 |
| TaaI | ACNGT | 2 cut(s) | 362, 478 |
| TaiI | ACGT | 7 cut(s) | 97, 299, 416, 942, 960, 1444, 1566 |
| TaqI | TCGA | 9 cut(s) | 337, 454, 543, 551, 809, 1507, 1528, 1532, 1566 |
| TaqII | GACCGA | 2 cut(s) | 1109, 1223 |
| TasI | AATT | 4 cut(s) | 108, 238, 471, 735 |
| TauI | GCSGC | 8 cut(s) | 907, 948, 1043, 1108, 1157, 1160, 1163, 1217 |
| TfiI | GAWTC | 1 cut(s) | 511 |
| Tru1I | TTAA | 2 cut(s) | 111, 1194 |
| Tru9I | TTAA | 2 cut(s) | 111, 1194 |
| TscAI | CASTG | 3 cut(s) | 51, 619, 1209 |
| TseFI | GTSAC | 5 cut(s) | 292, 409, 926, 1284, 1437 |
| TseI | GCWGC | 7 cut(s) | 803, 814, 1024, 1069, 1151, 1368, 1547 |
| Tsp45I | GTSAC | 5 cut(s) | 292, 409, 926, 1284, 1437 |
| TspDTI | ATGAA | 4 cut(s) | 354, 637, 787, 1002 |
| TspGWI | ACGGA | 3 cut(s) | 330, 447, 1409 |
| TspMI | CCCGGG | 2 cut(s) | 1230, 1467 |
| TspRI | CASTG | 3 cut(s) | 51, 619, 1209 |
| VpaK11BI | GGWCC | 2 cut(s) | 1401, 1512 |
| XagI | CCTNNNNNAGG | 3 cut(s) | 824, 1025, 1430 |
| XapI | RAATTY | 1 cut(s) | 238 |
| XbaI | TCTAGA | 1 cut(s) | 82 |
| XceI | RCATGY | 1 cut(s) | 1249 |
| XhoI | CTCGAG | 1 cut(s) | 1506 |
| XmaI | CCCGGG | 2 cut(s) | 1230, 1467 |
| XmnI | GAANNNNTTC | 1 cut(s) | 32 |
| XspI | CTAG | 3 cut(s) | 83, 105, 710 |
| ZraI | GACGTC | 2 cut(s) | 940, 1564 |