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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 396 |
| Acc36I | ACCTGC | 1 cut(s) | 172 |
| AccB1I | GGYRCC | 1 cut(s) | 196 |
| AccBSI | CCGCTC | 3 cut(s) | 259, 286, 436 |
| AccII | CGCG | 1 cut(s) | 399 |
| AcoI | YGGCCR | 1 cut(s) | 414 |
| AcyI | GRCGYC | 2 cut(s) | 197, 393 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 15 |
| AjnI | CCWGG | 2 cut(s) | 14, 429 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 248, 280 |
| AluBI | AGCT | 1 cut(s) | 406 |
| AluI | AGCT | 1 cut(s) | 406 |
| Alw26I | GTCTC | 3 cut(s) | 314, 323, 334 |
| AoxI | GGCC | 2 cut(s) | 153, 414 |
| ApeKI | GCWGC | 2 cut(s) | 50, 88 |
| AspLEI | GCGC | 3 cut(s) | 70, 199, 238 |
| AspS9I | GGNCC | 3 cut(s) | 45, 136, 154 |
| AsuHPI | GGTGA | 3 cut(s) | 32, 49, 139 |
| AvaII | GGWCC | 2 cut(s) | 45, 136 |
| BalI | TGGCCA | 1 cut(s) | 416 |
| BanI | GGYRCC | 1 cut(s) | 196 |
| BanII | GRGCYC | 1 cut(s) | 15 |
| BbvI | GCAGC | 2 cut(s) | 37, 100 |
| BccI | CCATC | 2 cut(s) | 282, 425 |
| BceAI | ACGGC | 1 cut(s) | 188 |
| BciT130I | CCWGG | 2 cut(s) | 16, 431 |
| BcoDI | GTCTC | 3 cut(s) | 314, 323, 334 |
| BfoI | RGCGCY | 2 cut(s) | 71, 200 |
| BfuAI | ACCTGC | 1 cut(s) | 172 |
| BisI | GCNGC | 5 cut(s) | 26, 51, 89, 287, 400 |
| BlsI | GCNGC | 5 cut(s) | 27, 52, 90, 288, 401 |
| Bme1390I | CCNGG | 2 cut(s) | 16, 431 |
| Bme18I | GGWCC | 2 cut(s) | 45, 136 |
| BmgT120I | GGNCC | 3 cut(s) | 45, 136, 154 |
| BmiI | GGNNCC | 2 cut(s) | 137, 198 |
| BmrFI | CCNGG | 2 cut(s) | 16, 431 |
| BpmI | CTGGAG | 2 cut(s) | 92, 296 |
| BsaHI | GRCGYC | 2 cut(s) | 197, 393 |
| BsaI | GGTCTC | 2 cut(s) | 314, 323 |
| BsaJI | CCNNGG | 5 cut(s) | 14, 15, 102, 333, 397 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 248, 278 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 15 |
| Bse118I | RCCGGY | 2 cut(s) | 28, 84 |
| Bse1I | ACTGG | 2 cut(s) | 348, 369 |
| BseBI | CCWGG | 2 cut(s) | 16, 431 |
| BseDI | CCNNGG | 5 cut(s) | 14, 15, 102, 333, 397 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 15 |
| BseNI | ACTGG | 2 cut(s) | 348, 369 |
| BseXI | GCAGC | 2 cut(s) | 37, 100 |
| BseYI | CCCAGC | 1 cut(s) | 289 |
| Bsh1236I | CGCG | 1 cut(s) | 399 |
| BshFI | GGCC | 2 cut(s) | 155, 416 |
| BshNI | GGYRCC | 1 cut(s) | 196 |
| BsiSI | CCGG | 2 cut(s) | 29, 85 |
| BslFI | GGGAC | 1 cut(s) | 375 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 15 |
| BsmAI | GTCTC | 3 cut(s) | 314, 323, 334 |
| BsmFI | GGGAC | 1 cut(s) | 375 |
| BsnI | GGCC | 2 cut(s) | 155, 416 |
| Bso31I | GGTCTC | 2 cut(s) | 314, 323 |
| Bsp1286I | GDGCHC | 1 cut(s) | 15 |
| Bsp143I | GATC | 2 cut(s) | 129, 211 |
| BspANI | GGCC | 2 cut(s) | 155, 416 |
| BspFNI | CGCG | 1 cut(s) | 399 |
| BspHI | TCATGA | 1 cut(s) | 243 |
| BspLI | GGNNCC | 2 cut(s) | 137, 198 |
| BspMI | ACCTGC | 1 cut(s) | 172 |
| BspT107I | GGYRCC | 1 cut(s) | 196 |
| BspTNI | GGTCTC | 2 cut(s) | 314, 323 |
| BsrBI | CCGCTC | 3 cut(s) | 259, 286, 436 |
| BsrFI | RCCGGY | 2 cut(s) | 28, 84 |
| BsrI | ACTGG | 2 cut(s) | 348, 369 |
| BssAI | RCCGGY | 2 cut(s) | 28, 84 |
| BssECI | CCNNGG | 5 cut(s) | 14, 15, 102, 333, 397 |
| BssMI | GATC | 2 cut(s) | 129, 211 |
| BssNI | GRCGYC | 2 cut(s) | 197, 393 |
| BssT1I | CCWWGG | 1 cut(s) | 333 |
| Bst2UI | CCWGG | 2 cut(s) | 16, 431 |
| Bst6I | CTCTTC | 2 cut(s) | 105, 114 |
| BstACI | GRCGYC | 2 cut(s) | 197, 393 |
| BstC8I | GCNNGC | 6 cut(s) | 55, 86, 143, 201, 284, 404 |
| BstDSI | CCRYGG | 2 cut(s) | 102, 397 |
| BstFNI | CGCG | 1 cut(s) | 399 |
| BstH2I | RGCGCY | 2 cut(s) | 71, 200 |
| BstHHI | GCGC | 3 cut(s) | 70, 199, 238 |
| BstKTI | GATC | 2 cut(s) | 132, 214 |
| BstMAI | GTCTC | 3 cut(s) | 314, 323, 334 |
| BstMBI | GATC | 2 cut(s) | 129, 211 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 31, 233 |
| BstNI | CCWGG | 2 cut(s) | 16, 431 |
| BstSCI | CCNGG | 2 cut(s) | 14, 429 |
| BstUI | CGCG | 1 cut(s) | 399 |
| BstV1I | GCAGC | 2 cut(s) | 37, 100 |
| BsuRI | GGCC | 2 cut(s) | 155, 416 |
| BtgI | CCRYGG | 2 cut(s) | 102, 397 |
| BtsI | GCAGTG | 1 cut(s) | 186 |
| BtsIMutI | CAGTG | 2 cut(s) | 186, 214 |
| BveI | ACCTGC | 1 cut(s) | 172 |
| Cac8I | GCNNGC | 6 cut(s) | 55, 86, 143, 201, 284, 404 |
| CciI | TCATGA | 1 cut(s) | 243 |
| CfoI | GCGC | 3 cut(s) | 70, 199, 238 |
| Cfr10I | RCCGGY | 2 cut(s) | 28, 84 |
| Cfr13I | GGNCC | 3 cut(s) | 45, 136, 154 |
| Cfr42I | CCGCGG | 1 cut(s) | 400 |
| CseI | GACGC | 1 cut(s) | 156 |
| CviAII | CATG | 1 cut(s) | 244 |
| CviJI | RGCY | 8 cut(s) | 13, 25, 84, 91, 155, 289, 406, 416 |
| CviKI_1 | RGCY | 8 cut(s) | 13, 25, 84, 91, 155, 289, 406, 416 |
| DinI | GGCGCC | 1 cut(s) | 198 |
| DpnI | GATC | 2 cut(s) | 131, 213 |
| DpnII | GATC | 2 cut(s) | 129, 211 |
| EaeI | YGGCCR | 1 cut(s) | 414 |
| Eam1104I | CTCTTC | 2 cut(s) | 105, 114 |
| EarI | CTCTTC | 2 cut(s) | 105, 114 |
| EciI | GGCGGA | 4 cut(s) | 128, 200, 341, 389 |
| Eco130I | CCWWGG | 1 cut(s) | 333 |
| Eco24I | GRGCYC | 1 cut(s) | 15 |
| Eco31I | GGTCTC | 2 cut(s) | 314, 323 |
| Eco47I | GGWCC | 2 cut(s) | 45, 136 |
| EcoRII | CCWGG | 2 cut(s) | 14, 429 |
| EcoT14I | CCWWGG | 1 cut(s) | 333 |
| EcoT38I | GRGCYC | 1 cut(s) | 15 |
| EgeI | GGCGCC | 1 cut(s) | 198 |
| EheI | GGCGCC | 1 cut(s) | 198 |
| ErhI | CCWWGG | 1 cut(s) | 333 |
| FaeI | CATG | 1 cut(s) | 247 |
| FaiI | YATR | 3 cut(s) | 234, 245, 387 |
| FaqI | GGGAC | 1 cut(s) | 375 |
| FatI | CATG | 1 cut(s) | 243 |
| FauI | CCCGC | 4 cut(s) | 27, 208, 252, 340 |
| Fnu4HI | GCNGC | 5 cut(s) | 26, 51, 89, 287, 400 |
| FriOI | GRGCYC | 1 cut(s) | 15 |
| Fsp4HI | GCNGC | 5 cut(s) | 26, 51, 89, 287, 400 |
| GlaI | GCGC | 3 cut(s) | 69, 198, 237 |
| GluI | GCNGC | 5 cut(s) | 26, 51, 89, 287, 400 |
| GsaI | CCCAGC | 1 cut(s) | 293 |
| GsuI | CTGGAG | 2 cut(s) | 92, 296 |
| HaeII | RGCGCY | 2 cut(s) | 71, 200 |
| HaeIII | GGCC | 2 cut(s) | 155, 416 |
| HapII | CCGG | 2 cut(s) | 29, 85 |
| HgaI | GACGC | 1 cut(s) | 156 |
| HhaI | GCGC | 3 cut(s) | 70, 199, 238 |
| Hin1I | GRCGYC | 2 cut(s) | 197, 393 |
| Hin1II | CATG | 1 cut(s) | 247 |
| Hin6I | GCGC | 3 cut(s) | 68, 197, 236 |
| HinP1I | GCGC | 3 cut(s) | 68, 197, 236 |
| HinfI | GANTC | 1 cut(s) | 218 |
| HpaII | CCGG | 2 cut(s) | 29, 85 |
| HphI | GGTGA | 3 cut(s) | 32, 49, 139 |
| Hpy188I | TCNGA | 1 cut(s) | 305 |
| Hpy188III | TCNNGA | 3 cut(s) | 215, 244, 313 |
| Hpy99I | CGWCG | 1 cut(s) | 172 |
| HpyAV | CCTTC | 3 cut(s) | 145, 166, 245 |
| HpyCH4IV | ACGT | 1 cut(s) | 393 |
| HpyCH4V | TGCA | 1 cut(s) | 179 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 31, 233 |
| HpySE526I | ACGT | 1 cut(s) | 393 |
| Hsp92I | GRCGYC | 2 cut(s) | 197, 393 |
| Hsp92II | CATG | 1 cut(s) | 247 |
| HspAI | GCGC | 3 cut(s) | 68, 197, 236 |
| KasI | GGCGCC | 1 cut(s) | 196 |
| KroI | GCCGGC | 1 cut(s) | 84 |
| KroNI | GCCGGC | 1 cut(s) | 86 |
| KspI | CCGCGG | 1 cut(s) | 400 |
| Kzo9I | GATC | 2 cut(s) | 129, 211 |
| LmnI | GCTCC | 2 cut(s) | 256, 433 |
| Lsp1109I | GCAGC | 2 cut(s) | 37, 100 |
| MaeII | ACGT | 1 cut(s) | 393 |
| MaeIII | GTNAC | 2 cut(s) | 37, 425 |
| MalI | GATC | 2 cut(s) | 131, 213 |
| MbiI | CCGCTC | 3 cut(s) | 259, 286, 436 |
| MboI | GATC | 2 cut(s) | 129, 211 |
| MboII | GAAGA | 3 cut(s) | 122, 128, 131 |
| MhlI | GDGCHC | 1 cut(s) | 15 |
| MlsI | TGGCCA | 1 cut(s) | 416 |
| MluNI | TGGCCA | 1 cut(s) | 416 |
| Mly113I | GGCGCC | 1 cut(s) | 197 |
| MlyI | GAGTC | 1 cut(s) | 212 |
| MnlI | CCTC | 8 cut(s) | 36, 100, 106, 115, 181, 187, 299, 309 |
| Mox20I | TGGCCA | 1 cut(s) | 416 |
| MroNI | GCCGGC | 1 cut(s) | 84 |
| MscI | TGGCCA | 1 cut(s) | 416 |
| Msp20I | TGGCCA | 1 cut(s) | 416 |
| MspA1I | CMGCKG | 2 cut(s) | 50, 399 |
| MspI | CCGG | 2 cut(s) | 29, 85 |
| MspR9I | CCNGG | 2 cut(s) | 16, 431 |
| MvaI | CCWGG | 2 cut(s) | 16, 431 |
| MvnI | CGCG | 1 cut(s) | 399 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 31, 233 |
| NaeI | GCCGGC | 1 cut(s) | 86 |
| NarI | GGCGCC | 1 cut(s) | 197 |
| NdeII | GATC | 2 cut(s) | 129, 211 |
| NgoMIV | GCCGGC | 1 cut(s) | 84 |
| NlaIII | CATG | 1 cut(s) | 247 |
| NlaIV | GGNNCC | 2 cut(s) | 137, 198 |
| NmeAIII | GCCGAG | 1 cut(s) | 253 |
| NmuCI | GTSAC | 2 cut(s) | 37, 425 |
| PagI | TCATGA | 1 cut(s) | 243 |
| PasI | CCCWGGG | 1 cut(s) | 15 |
| PdiI | GCCGGC | 1 cut(s) | 86 |
| PkrI | GCNGC | 5 cut(s) | 27, 52, 90, 288, 401 |
| PleI | GAGTC | 1 cut(s) | 212 |
| PluTI | GGCGCC | 1 cut(s) | 200 |
| PpsI | GAGTC | 1 cut(s) | 212 |
| Psp6I | CCWGG | 2 cut(s) | 14, 429 |
| PspFI | CCCAGC | 1 cut(s) | 289 |
| PspGI | CCWGG | 2 cut(s) | 14, 429 |
| PspN4I | GGNNCC | 2 cut(s) | 137, 198 |
| PspPI | GGNCC | 3 cut(s) | 45, 136, 154 |
| SacII | CCGCGG | 1 cut(s) | 400 |
| SatI | GCNGC | 5 cut(s) | 26, 51, 89, 287, 400 |
| Sau3AI | GATC | 2 cut(s) | 129, 211 |
| Sau96I | GGNCC | 3 cut(s) | 45, 136, 154 |
| SchI | GAGTC | 1 cut(s) | 212 |
| ScrFI | CCNGG | 2 cut(s) | 16, 431 |
| SduI | GDGCHC | 1 cut(s) | 15 |
| SetI | ASST | 7 cut(s) | 126, 166, 177, 310, 396, 408, 432 |
| SfoI | GGCGCC | 1 cut(s) | 198 |
| Sfr303I | CCGCGG | 1 cut(s) | 400 |
| SgrAI | CRCCGGYG | 1 cut(s) | 28 |
| SgrBI | CCGCGG | 1 cut(s) | 400 |
| SinI | GGWCC | 2 cut(s) | 45, 136 |
| SspDI | GGCGCC | 1 cut(s) | 196 |
| StyD4I | CCNGG | 2 cut(s) | 14, 429 |
| StyI | CCWWGG | 1 cut(s) | 333 |
| TaiI | ACGT | 1 cut(s) | 396 |
| TaqI | TCGA | 2 cut(s) | 170, 354 |
| TauI | GCSGC | 3 cut(s) | 28, 289, 402 |
| TscAI | CASTG | 2 cut(s) | 186, 214 |
| TseFI | GTSAC | 2 cut(s) | 37, 425 |
| TseI | GCWGC | 2 cut(s) | 50, 88 |
| Tsp45I | GTSAC | 2 cut(s) | 37, 425 |
| TspDTI | ATGAA | 1 cut(s) | 232 |
| TspRI | CASTG | 2 cut(s) | 186, 214 |
| VpaK11BI | GGWCC | 2 cut(s) | 45, 136 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 340 |
| ZraI | GACGTC | 1 cut(s) | 394 |