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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 3 cut(s) | 20, 359, 395 |
| AccI | GTMKAC | 1 cut(s) | 81 |
| AclWI | GGATC | 2 cut(s) | 68, 192 |
| AcoI | YGGCCR | 3 cut(s) | 99, 158, 366 |
| AcyI | GRCGYC | 2 cut(s) | 360, 396 |
| AfaI | GTAC | 1 cut(s) | 9 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 207 |
| AgsI | TTSAA | 1 cut(s) | 236 |
| AjnI | CCWGG | 1 cut(s) | 155 |
| AluBI | AGCT | 2 cut(s) | 242, 379 |
| AluI | AGCT | 2 cut(s) | 242, 379 |
| Alw26I | GTCTC | 1 cut(s) | 134 |
| AlwI | GGATC | 2 cut(s) | 68, 192 |
| AoxI | GGCC | 5 cut(s) | 48, 99, 158, 267, 366 |
| ApeKI | GCWGC | 2 cut(s) | 249, 379 |
| AspLEI | GCGC | 2 cut(s) | 362, 398 |
| AspS9I | GGNCC | 1 cut(s) | 49 |
| BalI | TGGCCA | 1 cut(s) | 368 |
| BanI | GGYRCC | 3 cut(s) | 20, 359, 395 |
| BanII | GRGCYC | 1 cut(s) | 111 |
| BbvI | GCAGC | 2 cut(s) | 236, 366 |
| BceAI | ACGGC | 1 cut(s) | 264 |
| BciT130I | CCWGG | 1 cut(s) | 157 |
| BcoDI | GTCTC | 1 cut(s) | 134 |
| BfaI | CTAG | 2 cut(s) | 243, 406 |
| BfoI | RGCGCY | 2 cut(s) | 363, 399 |
| BisI | GCNGC | 7 cut(s) | 99, 138, 217, 250, 294, 348, 380 |
| BlsI | GCNGC | 7 cut(s) | 100, 139, 218, 251, 295, 349, 381 |
| Bme1390I | CCNGG | 1 cut(s) | 157 |
| BmgT120I | GGNCC | 1 cut(s) | 49 |
| BmiI | GGNNCC | 4 cut(s) | 22, 278, 361, 397 |
| BmrFI | CCNGG | 1 cut(s) | 157 |
| BsaHI | GRCGYC | 2 cut(s) | 360, 396 |
| BsaJI | CCNNGG | 3 cut(s) | 52, 270, 363 |
| BsaWI | WCCGGW | 1 cut(s) | 76 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 207 |
| Bse118I | RCCGGY | 2 cut(s) | 17, 23 |
| BseBI | CCWGG | 1 cut(s) | 157 |
| BseDI | CCNNGG | 3 cut(s) | 52, 270, 363 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 207 |
| BseRI | GAGGAG | 1 cut(s) | 101 |
| BseX3I | CGGCCG | 1 cut(s) | 99 |
| BseXI | GCAGC | 2 cut(s) | 236, 366 |
| Bsh1285I | CGRYCG | 2 cut(s) | 81, 102 |
| BshFI | GGCC | 5 cut(s) | 50, 101, 160, 269, 368 |
| BshNI | GGYRCC | 3 cut(s) | 20, 359, 395 |
| BsiEI | CGRYCG | 2 cut(s) | 81, 102 |
| BsiSI | CCGG | 3 cut(s) | 18, 24, 77 |
| BslFI | GGGAC | 1 cut(s) | 223 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 207 |
| BsmAI | GTCTC | 1 cut(s) | 134 |
| BsmBI | CGTCTC | 1 cut(s) | 134 |
| BsmFI | GGGAC | 1 cut(s) | 223 |
| BsnI | GGCC | 5 cut(s) | 50, 101, 160, 269, 368 |
| Bsp1286I | GDGCHC | 1 cut(s) | 111 |
| Bsp143I | GATC | 4 cut(s) | 73, 122, 197, 354 |
| Bsp19I | CCATGG | 2 cut(s) | 52, 363 |
| BspANI | GGCC | 5 cut(s) | 50, 101, 160, 269, 368 |
| BspLI | GGNNCC | 4 cut(s) | 22, 278, 361, 397 |
| BspPI | GGATC | 2 cut(s) | 68, 192 |
| BspT107I | GGYRCC | 3 cut(s) | 20, 359, 395 |
| BsrFI | RCCGGY | 2 cut(s) | 17, 23 |
| BssAI | RCCGGY | 2 cut(s) | 17, 23 |
| BssECI | CCNNGG | 3 cut(s) | 52, 270, 363 |
| BssMI | GATC | 4 cut(s) | 73, 122, 197, 354 |
| BssNI | GRCGYC | 2 cut(s) | 360, 396 |
| BssT1I | CCWWGG | 2 cut(s) | 52, 363 |
| Bst2UI | CCWGG | 1 cut(s) | 157 |
| BstACI | GRCGYC | 2 cut(s) | 360, 396 |
| BstC8I | GCNNGC | 1 cut(s) | 25 |
| BstDSI | CCRYGG | 2 cut(s) | 52, 363 |
| BstH2I | RGCGCY | 2 cut(s) | 363, 399 |
| BstHHI | GCGC | 2 cut(s) | 362, 398 |
| BstKTI | GATC | 4 cut(s) | 76, 125, 200, 357 |
| BstMAI | GTCTC | 1 cut(s) | 134 |
| BstMBI | GATC | 4 cut(s) | 73, 122, 197, 354 |
| BstMCI | CGRYCG | 2 cut(s) | 81, 102 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 213, 255, 293, 302, 385 |
| BstNI | CCWGG | 1 cut(s) | 157 |
| BstSCI | CCNGG | 1 cut(s) | 155 |
| BstV1I | GCAGC | 2 cut(s) | 236, 366 |
| BstX2I | RGATCY | 1 cut(s) | 197 |
| BstYI | RGATCY | 1 cut(s) | 197 |
| BstZI | CGGCCG | 1 cut(s) | 99 |
| BsuRI | GGCC | 5 cut(s) | 50, 101, 160, 269, 368 |
| BtgI | CCRYGG | 2 cut(s) | 52, 363 |
| Cac8I | GCNNGC | 1 cut(s) | 25 |
| CfoI | GCGC | 2 cut(s) | 362, 398 |
| Cfr10I | RCCGGY | 2 cut(s) | 17, 23 |
| Cfr13I | GGNCC | 1 cut(s) | 49 |
| CseI | GACGC | 1 cut(s) | 49 |
| Csp6I | GTAC | 1 cut(s) | 8 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 21, 56 |
| CviAII | CATG | 2 cut(s) | 53, 364 |
| CviQI | GTAC | 1 cut(s) | 8 |
| DinI | GGCGCC | 2 cut(s) | 361, 397 |
| DpnI | GATC | 4 cut(s) | 75, 124, 199, 356 |
| DpnII | GATC | 4 cut(s) | 73, 122, 197, 354 |
| DraI | TTTAAA | 1 cut(s) | 310 |
| EaeI | YGGCCR | 3 cut(s) | 99, 158, 366 |
| EagI | CGGCCG | 1 cut(s) | 99 |
| EciI | GGCGGA | 2 cut(s) | 155, 335 |
| EclXI | CGGCCG | 1 cut(s) | 99 |
| Eco130I | CCWWGG | 2 cut(s) | 52, 363 |
| Eco24I | GRGCYC | 1 cut(s) | 111 |
| Eco52I | CGGCCG | 1 cut(s) | 99 |
| EcoRII | CCWGG | 1 cut(s) | 155 |
| EcoT14I | CCWWGG | 2 cut(s) | 52, 363 |
| EcoT38I | GRGCYC | 1 cut(s) | 111 |
| EgeI | GGCGCC | 2 cut(s) | 361, 397 |
| EheI | GGCGCC | 2 cut(s) | 361, 397 |
| ErhI | CCWWGG | 2 cut(s) | 52, 363 |
| Esp3I | CGTCTC | 1 cut(s) | 134 |
| FaeI | CATG | 2 cut(s) | 56, 367 |
| FaiI | YATR | 5 cut(s) | 54, 327, 338, 365, 401 |
| FaqI | GGGAC | 1 cut(s) | 223 |
| FatI | CATG | 2 cut(s) | 52, 363 |
| FauI | CCCGC | 1 cut(s) | 200 |
| FblI | GTMKAC | 1 cut(s) | 81 |
| Fnu4HI | GCNGC | 7 cut(s) | 99, 138, 217, 250, 294, 348, 380 |
| FriOI | GRGCYC | 1 cut(s) | 111 |
| Fsp4HI | GCNGC | 7 cut(s) | 99, 138, 217, 250, 294, 348, 380 |
| FspBI | CTAG | 2 cut(s) | 243, 406 |
| GlaI | GCGC | 2 cut(s) | 361, 397 |
| GluI | GCNGC | 7 cut(s) | 99, 138, 217, 250, 294, 348, 380 |
| HaeII | RGCGCY | 2 cut(s) | 363, 399 |
| HaeIII | GGCC | 5 cut(s) | 50, 101, 160, 269, 368 |
| HapII | CCGG | 3 cut(s) | 18, 24, 77 |
| HgaI | GACGC | 1 cut(s) | 49 |
| HhaI | GCGC | 2 cut(s) | 362, 398 |
| Hin1I | GRCGYC | 2 cut(s) | 360, 396 |
| Hin1II | CATG | 2 cut(s) | 56, 367 |
| Hin6I | GCGC | 2 cut(s) | 360, 396 |
| HinP1I | GCGC | 2 cut(s) | 360, 396 |
| HincII | GTYRAC | 1 cut(s) | 82 |
| HindII | GTYRAC | 1 cut(s) | 82 |
| HinfI | GANTC | 2 cut(s) | 92, 211 |
| HpaII | CCGG | 3 cut(s) | 18, 24, 77 |
| Hpy166II | GTNNAC | 2 cut(s) | 82, 226 |
| Hpy8I | GTNNAC | 2 cut(s) | 82, 226 |
| Hpy99I | CGWCG | 2 cut(s) | 65, 86 |
| HpyAV | CCTTC | 3 cut(s) | 157, 211, 325 |
| HpyCH4IV | ACGT | 1 cut(s) | 10 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 213, 255, 293, 302, 385 |
| HpySE526I | ACGT | 1 cut(s) | 10 |
| Hsp92I | GRCGYC | 2 cut(s) | 360, 396 |
| Hsp92II | CATG | 2 cut(s) | 56, 367 |
| HspAI | GCGC | 2 cut(s) | 360, 396 |
| KasI | GGCGCC | 2 cut(s) | 359, 395 |
| KroI | GCCGGC | 1 cut(s) | 23 |
| KroNI | GCCGGC | 1 cut(s) | 25 |
| Kzo9I | GATC | 4 cut(s) | 73, 122, 197, 354 |
| LmnI | GCTCC | 3 cut(s) | 142, 276, 376 |
| LpnPI | CCDG | 6 cut(s) | 27, 31, 37, 90, 142, 169 |
| Lsp1109I | GCAGC | 2 cut(s) | 236, 366 |
| MaeI | CTAG | 2 cut(s) | 243, 406 |
| MaeII | ACGT | 1 cut(s) | 10 |
| MaeIII | GTNAC | 1 cut(s) | 28 |
| MalI | GATC | 4 cut(s) | 75, 124, 199, 356 |
| MboI | GATC | 4 cut(s) | 73, 122, 197, 354 |
| MboII | GAAGA | 1 cut(s) | 364 |
| MflI | RGATCY | 1 cut(s) | 197 |
| MhlI | GDGCHC | 1 cut(s) | 111 |
| MlsI | TGGCCA | 1 cut(s) | 368 |
| MluCI | AATT | 1 cut(s) | 231 |
| MluNI | TGGCCA | 1 cut(s) | 368 |
| Mly113I | GGCGCC | 2 cut(s) | 360, 396 |
| MlyI | GAGTC | 1 cut(s) | 205 |
| MnlI | CCTC | 6 cut(s) | 79, 82, 239, 259, 265, 295 |
| Mox20I | TGGCCA | 1 cut(s) | 368 |
| MroNI | GCCGGC | 1 cut(s) | 23 |
| MscI | TGGCCA | 1 cut(s) | 368 |
| MseI | TTAA | 2 cut(s) | 179, 309 |
| Msp20I | TGGCCA | 1 cut(s) | 368 |
| MspI | CCGG | 3 cut(s) | 18, 24, 77 |
| MspR9I | CCNGG | 1 cut(s) | 157 |
| MssI | GTTTAAAC | 1 cut(s) | 310 |
| MvaI | CCWGG | 1 cut(s) | 157 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 213, 255, 293, 302, 385 |
| NaeI | GCCGGC | 1 cut(s) | 25 |
| NarI | GGCGCC | 2 cut(s) | 360, 396 |
| NcoI | CCATGG | 2 cut(s) | 52, 363 |
| NdeII | GATC | 4 cut(s) | 73, 122, 197, 354 |
| NgoMIV | GCCGGC | 1 cut(s) | 23 |
| NlaIII | CATG | 2 cut(s) | 56, 367 |
| NlaIV | GGNNCC | 4 cut(s) | 22, 278, 361, 397 |
| NmeAIII | GCCGAG | 2 cut(s) | 113, 295 |
| NmuCI | GTSAC | 1 cut(s) | 28 |
| PdiI | GCCGGC | 1 cut(s) | 25 |
| PfeI | GAWTC | 1 cut(s) | 92 |
| PkrI | GCNGC | 7 cut(s) | 100, 139, 218, 251, 295, 349, 381 |
| PleI | GAGTC | 1 cut(s) | 205 |
| PluTI | GGCGCC | 2 cut(s) | 363, 399 |
| PmeI | GTTTAAAC | 1 cut(s) | 310 |
| PpsI | GAGTC | 1 cut(s) | 205 |
| Psp6I | CCWGG | 1 cut(s) | 155 |
| PspGI | CCWGG | 1 cut(s) | 155 |
| PspN4I | GGNNCC | 4 cut(s) | 22, 278, 361, 397 |
| PspPI | GGNCC | 1 cut(s) | 49 |
| PsuI | RGATCY | 1 cut(s) | 197 |
| RsaI | GTAC | 1 cut(s) | 9 |
| RsaNI | GTAC | 1 cut(s) | 8 |
| SalI | GTCGAC | 1 cut(s) | 80 |
| SaqAI | TTAA | 2 cut(s) | 179, 309 |
| SatI | GCNGC | 7 cut(s) | 99, 138, 217, 250, 294, 348, 380 |
| Sau3AI | GATC | 4 cut(s) | 73, 122, 197, 354 |
| Sau96I | GGNCC | 1 cut(s) | 49 |
| SchI | GAGTC | 1 cut(s) | 205 |
| ScrFI | CCNGG | 1 cut(s) | 157 |
| SduI | GDGCHC | 1 cut(s) | 111 |
| SetI | ASST | 4 cut(s) | 13, 174, 244, 381 |
| SfoI | GGCGCC | 2 cut(s) | 361, 397 |
| Sse9I | AATT | 1 cut(s) | 231 |
| SspDI | GGCGCC | 2 cut(s) | 359, 395 |
| SspMI | CTAG | 2 cut(s) | 243, 406 |
| StyD4I | CCNGG | 1 cut(s) | 155 |
| StyI | CCWWGG | 2 cut(s) | 52, 363 |
| TaiI | ACGT | 1 cut(s) | 13 |
| TaqI | TCGA | 1 cut(s) | 81 |
| TaqII | GACCGA | 1 cut(s) | 356 |
| TasI | AATT | 1 cut(s) | 231 |
| TauI | GCSGC | 5 cut(s) | 101, 140, 219, 296, 350 |
| TfiI | GAWTC | 1 cut(s) | 92 |
| Tru1I | TTAA | 2 cut(s) | 179, 309 |
| Tru9I | TTAA | 2 cut(s) | 179, 309 |
| TseFI | GTSAC | 1 cut(s) | 28 |
| TseI | GCWGC | 2 cut(s) | 249, 379 |
| Tsp45I | GTSAC | 1 cut(s) | 28 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 370 |
| XmiI | GTMKAC | 1 cut(s) | 81 |
| XspI | CTAG | 2 cut(s) | 243, 406 |