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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 700 |
| Acc36I | ACCTGC | 2 cut(s) | 700, 969 |
| Acc65I | GGTACC | 1 cut(s) | 335 |
| AccB1I | GGYRCC | 3 cut(s) | 335, 523, 2264 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 588 |
| AccBSI | CCGCTC | 8 cut(s) | 244, 884, 1349, 1507, 1555, 1582, 1720, 2271 |
| AccI | GTMKAC | 3 cut(s) | 473, 1002, 1283 |
| AccIII | TCCGGA | 1 cut(s) | 1153 |
| AclWI | GGATC | 2 cut(s) | 1339, 1732 |
| AcoI | YGGCCR | 4 cut(s) | 216, 798, 1851, 1929 |
| AcsI | RAATTY | 5 cut(s) | 537, 573, 715, 754, 1559 |
| AcuI | CTGAAG | 2 cut(s) | 1627, 2049 |
| AcvI | CACGTG | 2 cut(s) | 1019, 1835 |
| AcyI | GRCGYC | 1 cut(s) | 1697 |
| AfaI | GTAC | 2 cut(s) | 337, 401 |
| AfeI | AGCGCT | 1 cut(s) | 606 |
| AflIII | ACRYGT | 4 cut(s) | 48, 585, 905, 1016 |
| AgeI | ACCGGT | 1 cut(s) | 402 |
| AgsI | TTSAA | 5 cut(s) | 391, 1028, 2060, 2068, 2261 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 769, 2400 |
| AjiI | CACGTC | 3 cut(s) | 49, 1459, 1867 |
| AjnI | CCWGG | 7 cut(s) | 819, 1101, 1689, 1710, 1740, 1976, 2358 |
| AluBI | AGCT | 9 cut(s) | 251, 424, 745, 1073, 1250, 1647, 1843, 1894, 2027 |
| AluI | AGCT | 9 cut(s) | 251, 424, 745, 1073, 1250, 1647, 1843, 1894, 2027 |
| Alw21I | GWGCWC | 1 cut(s) | 486 |
| Alw26I | GTCTC | 6 cut(s) | 206, 1457, 1489, 1857, 1891, 2387 |
| Alw44I | GTGCAC | 1 cut(s) | 482 |
| AlwI | GGATC | 2 cut(s) | 1339, 1732 |
| AlwNI | CAGNNNCTG | 4 cut(s) | 942, 1711, 1801, 2054 |
| Ama87I | CYCGRG | 3 cut(s) | 2272, 2373, 2412 |
| Aor13HI | TCCGGA | 1 cut(s) | 1153 |
| Aor51HI | AGCGCT | 1 cut(s) | 606 |
| ApaI | GGGCCC | 2 cut(s) | 1477, 2122 |
| ApaLI | GTGCAC | 1 cut(s) | 482 |
| ApoI | RAATTY | 5 cut(s) | 537, 573, 715, 754, 1559 |
| AsiGI | ACCGGT | 1 cut(s) | 402 |
| Asp718I | GGTACC | 1 cut(s) | 335 |
| AsuC2I | CCSGG | 4 cut(s) | 40, 411, 1038, 1123 |
| AsuHPI | GGTGA | 9 cut(s) | 724, 973, 1159, 1201, 2002, 2018, 2179, 2245, 2318 |
| AsuNHI | GCTAGC | 1 cut(s) | 247 |
| AvaI | CYCGRG | 3 cut(s) | 2272, 2373, 2412 |
| AvaII | GGWCC | 7 cut(s) | 641, 786, 828, 1078, 1353, 1502, 2035 |
| AxyI | CCTNAGG | 1 cut(s) | 2184 |
| BaeGI | GKGCMC | 5 cut(s) | 486, 528, 1477, 2122, 2269 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 327, 360 |
| BalI | TGGCCA | 2 cut(s) | 800, 1853 |
| BanI | GGYRCC | 3 cut(s) | 335, 523, 2264 |
| BanII | GRGCYC | 3 cut(s) | 1317, 1477, 2122 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2233, 2265 |
| BauI | CACGAG | 1 cut(s) | 485 |
| BbrPI | CACGTG | 2 cut(s) | 1019, 1835 |
| Bbv12I | GWGCWC | 1 cut(s) | 486 |
| BccI | CCATC | 2 cut(s) | 326, 2375 |
| BceAI | ACGGC | 8 cut(s) | 127, 231, 356, 362, 464, 819, 1007, 1246 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 1046, 1080, 1374, 1408, 1802, 1836 |
| BciT130I | CCWGG | 7 cut(s) | 821, 1103, 1691, 1712, 1742, 1978, 2360 |
| BcnI | CCSGG | 4 cut(s) | 40, 411, 1038, 1123 |
| BcoDI | GTCTC | 6 cut(s) | 206, 1457, 1489, 1857, 1891, 2387 |
| BfaI | CTAG | 8 cut(s) | 131, 201, 248, 252, 630, 1586, 1601, 2123 |
| BfmI | CTRYAG | 3 cut(s) | 700, 1824, 1958 |
| BfoI | RGCGCY | 5 cut(s) | 608, 694, 740, 1801, 2157 |
| BfuAI | ACCTGC | 2 cut(s) | 700, 969 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1127 |
| BlpI | GCTNAGC | 2 cut(s) | 1134, 2199 |
| Bme18I | GGWCC | 7 cut(s) | 641, 786, 828, 1078, 1353, 1502, 2035 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 769, 2400 |
| BmeT110I | CYCGRG | 3 cut(s) | 2272, 2373, 2412 |
| BmgBI | CACGTC | 3 cut(s) | 49, 1459, 1867 |
| BmrI | ACTGGG | 2 cut(s) | 2173, 2326 |
| BmsI | GCATC | 6 cut(s) | 447, 461, 1216, 1810, 1819, 2127 |
| BmtI | GCTAGC | 1 cut(s) | 251 |
| BmuI | ACTGGG | 2 cut(s) | 2173, 2326 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 2276, 2308, 2278, 2310 |
| BpmI | CTGGAG | 3 cut(s) | 1124, 1184, 1916 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 1134, 2199 |
| BpuEI | CTTGAG | 2 cut(s) | 1493, 1769 |
| BpuMI | CCSGG | 4 cut(s) | 40, 411, 1038, 1123 |
| Bsa29I | ATCGAT | 2 cut(s) | 455, 1950 |
| BsaAI | YACGTR | 2 cut(s) | 1019, 1835 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1952 |
| BsaHI | GRCGYC | 1 cut(s) | 1697 |
| BsaI | GGTCTC | 1 cut(s) | 1457 |
| BsaWI | WCCGGW | 3 cut(s) | 402, 1153, 1186 |
| Bse118I | RCCGGY | 5 cut(s) | 402, 1381, 2194, 2230, 2299 |
| Bse1I | ACTGG | 8 cut(s) | 267, 525, 681, 1174, 1633, 2004, 2168, 2332 |
| Bse21I | CCTNAGG | 1 cut(s) | 2184 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1952 |
| BseAI | TCCGGA | 1 cut(s) | 1153 |
| BseBI | CCWGG | 7 cut(s) | 821, 1103, 1691, 1712, 1742, 1978, 2360 |
| BseCI | ATCGAT | 2 cut(s) | 455, 1950 |
| BseGI | GGATG | 4 cut(s) | 369, 402, 1459, 2440 |
| BseJI | GATNNNNATC | 1 cut(s) | 1952 |
| BseMII | CTCAG | 8 cut(s) | 183, 1148, 1170, 1349, 1741, 2012, 2175, 2213 |
| BseNI | ACTGG | 8 cut(s) | 267, 525, 681, 1174, 1633, 2004, 2168, 2332 |
| BseRI | GAGGAG | 5 cut(s) | 968, 1463, 1748, 2000, 2313 |
| BseSI | GKGCMC | 5 cut(s) | 486, 528, 1477, 2122, 2269 |
| BseX3I | CGGCCG | 1 cut(s) | 216 |
| BseYI | CCCAGC | 5 cut(s) | 1250, 1367, 2114, 2178, 2313 |
| BsgI | GTGCAG | 1 cut(s) | 647 |
| Bsh1285I | CGRYCG | 2 cut(s) | 219, 2300 |
| BshNI | GGYRCC | 3 cut(s) | 335, 523, 2264 |
| BshTI | ACCGGT | 1 cut(s) | 402 |
| BshVI | ATCGAT | 2 cut(s) | 455, 1950 |
| BsiEI | CGRYCG | 2 cut(s) | 219, 2300 |
| BsiHKAI | GWGCWC | 1 cut(s) | 486 |
| BsiHKCI | CYCGRG | 3 cut(s) | 2272, 2373, 2412 |
| BsmAI | GTCTC | 6 cut(s) | 206, 1457, 1489, 1857, 1891, 2387 |
| BsmBI | CGTCTC | 2 cut(s) | 206, 1857 |
| BsmI | GAATGC | 4 cut(s) | 310, 2063, 2095, 2227 |
| Bso31I | GGTCTC | 1 cut(s) | 1457 |
| BsoBI | CYCGRG | 3 cut(s) | 2272, 2373, 2412 |
| Bsp120I | GGGCCC | 2 cut(s) | 1473, 2118 |
| Bsp1286I | GDGCHC | 6 cut(s) | 486, 528, 1317, 1477, 2122, 2269 |
| Bsp13I | TCCGGA | 1 cut(s) | 1153 |
| Bsp143I | GATC | 5 cut(s) | 747, 1089, 1331, 1737, 1947 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 1134, 2199 |
| Bsp19I | CCATGG | 1 cut(s) | 171 |
| BspCNI | CTCAG | 8 cut(s) | 184, 1147, 1171, 1348, 1740, 2013, 2176, 2212 |
| BspDI | ATCGAT | 2 cut(s) | 455, 1950 |
| BspEI | TCCGGA | 1 cut(s) | 1153 |
| BspHI | TCATGA | 1 cut(s) | 1539 |
| BspMAI | CTGCAG | 3 cut(s) | 704, 1828, 1962 |
| BspMI | ACCTGC | 2 cut(s) | 700, 969 |
| BspOI | GCTAGC | 1 cut(s) | 251 |
| BspPI | GGATC | 2 cut(s) | 1339, 1732 |
| BspT107I | GGYRCC | 3 cut(s) | 335, 523, 2264 |
| BspTNI | GGTCTC | 1 cut(s) | 1457 |
| BsrBI | CCGCTC | 8 cut(s) | 244, 884, 1349, 1507, 1555, 1582, 1720, 2271 |
| BsrFI | RCCGGY | 5 cut(s) | 402, 1381, 2194, 2230, 2299 |
| BsrI | ACTGG | 8 cut(s) | 267, 525, 681, 1174, 1633, 2004, 2168, 2332 |
| BssAI | RCCGGY | 5 cut(s) | 402, 1381, 2194, 2230, 2299 |
| BssMI | GATC | 5 cut(s) | 747, 1089, 1331, 1737, 1947 |
| BssNI | GRCGYC | 1 cut(s) | 1697 |
| BssSI | CACGAG | 1 cut(s) | 485 |
| BssT1I | CCWWGG | 7 cut(s) | 158, 171, 464, 502, 694, 1219, 1935 |
| Bst2BI | CACGAG | 1 cut(s) | 485 |
| Bst2UI | CCWGG | 7 cut(s) | 821, 1103, 1691, 1712, 1742, 1978, 2360 |
| Bst4CI | ACNGT | 7 cut(s) | 260, 439, 649, 1082, 1144, 1550, 2073 |
| Bst6I | CTCTTC | 5 cut(s) | 909, 1271, 1440, 2231, 2460 |
| BstACI | GRCGYC | 1 cut(s) | 1697 |
| BstBAI | YACGTR | 2 cut(s) | 1019, 1835 |
| BstDEI | CTNAG | 9 cut(s) | 192, 1134, 1179, 1335, 1701, 1727, 2021, 2184, 2199 |
| BstDSI | CCRYGG | 3 cut(s) | 171, 648, 801 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 1805, 1916 |
| BstF5I | GGATG | 4 cut(s) | 369, 402, 1459, 2440 |
| BstH2I | RGCGCY | 5 cut(s) | 608, 694, 740, 1801, 2157 |
| BstKTI | GATC | 5 cut(s) | 750, 1092, 1334, 1740, 1950 |
| BstMAI | GTCTC | 6 cut(s) | 206, 1457, 1489, 1857, 1891, 2387 |
| BstMBI | GATC | 5 cut(s) | 747, 1089, 1331, 1737, 1947 |
| BstMCI | CGRYCG | 2 cut(s) | 219, 2300 |
| BstNI | CCWGG | 7 cut(s) | 821, 1103, 1691, 1712, 1742, 1978, 2360 |
| BstNSI | RCATGY | 2 cut(s) | 589, 1909 |
| BstSFI | CTRYAG | 3 cut(s) | 700, 1824, 1958 |
| BstSLI | GKGCMC | 5 cut(s) | 486, 528, 1477, 2122, 2269 |
| BstX2I | RGATCY | 2 cut(s) | 1331, 1737 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1075 |
| BstYI | RGATCY | 2 cut(s) | 1331, 1737 |
| BstZI | CGGCCG | 1 cut(s) | 216 |
| Bsu15I | ATCGAT | 2 cut(s) | 455, 1950 |
| Bsu36I | CCTNAGG | 1 cut(s) | 2184 |
| BsuTUI | ATCGAT | 2 cut(s) | 455, 1950 |
| BtgI | CCRYGG | 3 cut(s) | 171, 648, 801 |
| BtgZI | GCGATG | 2 cut(s) | 1124, 2108 |
| BtrI | CACGTC | 3 cut(s) | 49, 1459, 1867 |
| BtsCI | GGATG | 4 cut(s) | 369, 402, 1459, 2440 |
| BtsI | GCAGTG | 3 cut(s) | 34, 116, 1359 |
| BtsIMutI | CAGTG | 7 cut(s) | 34, 116, 265, 274, 518, 1359, 1555 |
| BveI | ACCTGC | 2 cut(s) | 700, 969 |
| CaiI | CAGNNNCTG | 4 cut(s) | 942, 1711, 1801, 2054 |
| CciI | TCATGA | 1 cut(s) | 1539 |
| Cfr10I | RCCGGY | 5 cut(s) | 402, 1381, 2194, 2230, 2299 |
| ClaI | ATCGAT | 2 cut(s) | 455, 1950 |
| CseI | GACGC | 6 cut(s) | 80, 176, 913, 1201, 1406, 1686 |
| CsiI | ACCWGGT | 1 cut(s) | 819 |
| Csp6I | GTAC | 2 cut(s) | 336, 400 |
| CspAI | ACCGGT | 1 cut(s) | 402 |
| CviAII | CATG | 6 cut(s) | 104, 172, 586, 1540, 1883, 1906 |
| CviQI | GTAC | 2 cut(s) | 336, 400 |
| DdeI | CTNAG | 9 cut(s) | 192, 1134, 1179, 1335, 1701, 1727, 2021, 2184, 2199 |
| DpnI | GATC | 5 cut(s) | 749, 1091, 1333, 1739, 1949 |
| DpnII | GATC | 5 cut(s) | 747, 1089, 1331, 1737, 1947 |
| DriI | GACNNNNNGTC | 2 cut(s) | 769, 2400 |
| EaeI | YGGCCR | 4 cut(s) | 216, 798, 1851, 1929 |
| EagI | CGGCCG | 1 cut(s) | 216 |
| Eam1104I | CTCTTC | 5 cut(s) | 909, 1271, 1440, 2231, 2460 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 769, 2400 |
| EarI | CTCTTC | 5 cut(s) | 909, 1271, 1440, 2231, 2460 |
| EciI | GGCGGA | 7 cut(s) | 488, 668, 964, 1423, 1778, 2093, 2436 |
| EclXI | CGGCCG | 1 cut(s) | 216 |
| Eco130I | CCWWGG | 7 cut(s) | 158, 171, 464, 502, 694, 1219, 1935 |
| Eco24I | GRGCYC | 3 cut(s) | 1317, 1477, 2122 |
| Eco31I | GGTCTC | 1 cut(s) | 1457 |
| Eco32I | GATATC | 1 cut(s) | 1954 |
| Eco47I | GGWCC | 7 cut(s) | 641, 786, 828, 1078, 1353, 1502, 2035 |
| Eco47III | AGCGCT | 1 cut(s) | 606 |
| Eco52I | CGGCCG | 1 cut(s) | 216 |
| Eco57I | CTGAAG | 2 cut(s) | 1627, 2049 |
| Eco72I | CACGTG | 2 cut(s) | 1019, 1835 |
| Eco81I | CCTNAGG | 1 cut(s) | 2184 |
| Eco88I | CYCGRG | 3 cut(s) | 2272, 2373, 2412 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 1805, 1916 |
| EcoO109I | RGGNCCY | 4 cut(s) | 786, 1473, 2118, 2119 |
| EcoRI | GAATTC | 1 cut(s) | 1559 |
| EcoRII | CCWGG | 7 cut(s) | 819, 1101, 1689, 1710, 1740, 1976, 2358 |
| EcoRV | GATATC | 1 cut(s) | 1954 |
| EcoT14I | CCWWGG | 7 cut(s) | 158, 171, 464, 502, 694, 1219, 1935 |
| EcoT38I | GRGCYC | 3 cut(s) | 1317, 1477, 2122 |
| ErhI | CCWWGG | 7 cut(s) | 158, 171, 464, 502, 694, 1219, 1935 |
| Esp3I | CGTCTC | 2 cut(s) | 206, 1857 |
| FaeI | CATG | 6 cut(s) | 107, 175, 589, 1543, 1886, 1909 |
| FatI | CATG | 6 cut(s) | 103, 171, 585, 1539, 1882, 1905 |
| FblI | GTMKAC | 3 cut(s) | 473, 1002, 1283 |
| FokI | GGATG | 4 cut(s) | 376, 409, 1466, 2427 |
| FriOI | GRGCYC | 3 cut(s) | 1317, 1477, 2122 |
| FspBI | CTAG | 8 cut(s) | 131, 201, 248, 252, 630, 1586, 1601, 2123 |
| GsaI | CCCAGC | 5 cut(s) | 1254, 1371, 2118, 2182, 2317 |
| GsuI | CTGGAG | 3 cut(s) | 1124, 1184, 1916 |
| HaeII | RGCGCY | 5 cut(s) | 608, 694, 740, 1801, 2157 |
| HgaI | GACGC | 6 cut(s) | 80, 176, 913, 1201, 1406, 1686 |
| Hin1I | GRCGYC | 1 cut(s) | 1697 |
| Hin1II | CATG | 6 cut(s) | 107, 175, 589, 1543, 1886, 1909 |
| HincII | GTYRAC | 2 cut(s) | 346, 1424 |
| HindII | GTYRAC | 2 cut(s) | 346, 1424 |
| HphI | GGTGA | 9 cut(s) | 724, 973, 1159, 1201, 2002, 2018, 2179, 2245, 2318 |
| Hpy166II | GTNNAC | 7 cut(s) | 346, 442, 474, 484, 1003, 1284, 1424 |
| Hpy188I | TCNGA | 9 cut(s) | 331, 435, 865, 938, 1180, 1338, 2338, 2406, 2422 |
| Hpy188III | TCNNGA | 6 cut(s) | 191, 751, 1154, 1540, 1748, 2295 |
| Hpy8I | GTNNAC | 7 cut(s) | 346, 442, 474, 484, 1003, 1284, 1424 |
| Hpy99I | CGWCG | 6 cut(s) | 377, 439, 850, 1244, 1329, 1422 |
| HpyCH4III | ACNGT | 7 cut(s) | 260, 439, 649, 1082, 1144, 1550, 2073 |
| HpyF3I | CTNAG | 9 cut(s) | 192, 1134, 1179, 1335, 1701, 1727, 2021, 2184, 2199 |
| Hsp92I | GRCGYC | 1 cut(s) | 1697 |
| Hsp92II | CATG | 6 cut(s) | 107, 175, 589, 1543, 1886, 1909 |
| Kpn2I | TCCGGA | 1 cut(s) | 1153 |
| KpnI | GGTACC | 1 cut(s) | 339 |
| KroI | GCCGGC | 2 cut(s) | 1381, 2194 |
| KroNI | GCCGGC | 2 cut(s) | 1383, 2196 |
| Kzo9I | GATC | 5 cut(s) | 747, 1089, 1331, 1737, 1947 |
| LmnI | GCTCC | 6 cut(s) | 734, 841, 1312, 1375, 1519, 1897 |
| LweI | GCATC | 6 cut(s) | 447, 461, 1216, 1810, 1819, 2127 |
| MabI | ACCWGGT | 1 cut(s) | 819 |
| MaeI | CTAG | 8 cut(s) | 131, 201, 248, 252, 630, 1586, 1601, 2123 |
| MaeIII | GTNAC | 9 cut(s) | 144, 236, 254, 508, 925, 1040, 1189, 1658, 2306 |
| MalI | GATC | 5 cut(s) | 749, 1091, 1333, 1739, 1949 |
| MbiI | CCGCTC | 8 cut(s) | 244, 884, 1349, 1507, 1555, 1582, 1720, 2271 |
| MboI | GATC | 5 cut(s) | 747, 1089, 1331, 1737, 1947 |
| MboII | GAAGA | 9 cut(s) | 923, 926, 1288, 1457, 1498, 2005, 2230, 2248, 2477 |
| MflI | RGATCY | 2 cut(s) | 1331, 1737 |
| MhlI | GDGCHC | 6 cut(s) | 486, 528, 1317, 1477, 2122, 2269 |
| MlsI | TGGCCA | 2 cut(s) | 800, 1853 |
| MluCI | AATT | 7 cut(s) | 537, 573, 715, 754, 1096, 1559, 1778 |
| MluI | ACGCGT | 1 cut(s) | 905 |
| MluNI | TGGCCA | 2 cut(s) | 800, 1853 |
| MmeI | TCCRAC | 7 cut(s) | 458, 843, 855, 1764, 1896, 2316, 2429 |
| Mox20I | TGGCCA | 2 cut(s) | 800, 1853 |
| MroI | TCCGGA | 1 cut(s) | 1153 |
| MroNI | GCCGGC | 2 cut(s) | 1381, 2194 |
| MscI | TGGCCA | 2 cut(s) | 800, 1853 |
| MseI | TTAA | 2 cut(s) | 858, 1169 |
| MslI | CAYNNNNRTG | 1 cut(s) | 669 |
| Msp20I | TGGCCA | 2 cut(s) | 800, 1853 |
| MspA1I | CMGCKG | 6 cut(s) | 221, 1367, 1520, 1963, 2054, 2317 |
| Mva1269I | GAATGC | 4 cut(s) | 310, 2063, 2095, 2227 |
| MvaI | CCWGG | 7 cut(s) | 821, 1103, 1691, 1712, 1742, 1978, 2360 |
| NaeI | GCCGGC | 2 cut(s) | 1383, 2196 |
| NciI | CCSGG | 4 cut(s) | 40, 411, 1038, 1123 |
| NcoI | CCATGG | 1 cut(s) | 171 |
| NdeII | GATC | 5 cut(s) | 747, 1089, 1331, 1737, 1947 |
| NgoMIV | GCCGGC | 2 cut(s) | 1381, 2194 |
| NheI | GCTAGC | 1 cut(s) | 247 |
| NlaIII | CATG | 6 cut(s) | 107, 175, 589, 1543, 1886, 1909 |
| NmeAIII | GCCGAG | 1 cut(s) | 1628 |
| NmuCI | GTSAC | 6 cut(s) | 236, 508, 925, 1189, 1658, 2306 |
| NspI | RCATGY | 2 cut(s) | 589, 1909 |
| PaeR7I | CTCGAG | 1 cut(s) | 2373 |
| PagI | TCATGA | 1 cut(s) | 1539 |
| PaqCI | CACCTGC | 1 cut(s) | 700 |
| PciI | ACATGT | 1 cut(s) | 585 |
| PcsI | WCGNNNNNNNCGW | 8 cut(s) | 92, 184, 221, 375, 831, 1015, 1236, 1434 |
| PctI | GAATGC | 4 cut(s) | 310, 2063, 2095, 2227 |
| PdiI | GCCGGC | 2 cut(s) | 1383, 2196 |
| PfeI | GAWTC | 3 cut(s) | 35, 952, 1150 |
| PflFI | GACNNNGTC | 2 cut(s) | 1500, 1883 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 588 |
| PfoI | TCCNGGA | 1 cut(s) | 1101 |
| PinAI | ACCGGT | 1 cut(s) | 402 |
| PmaCI | CACGTG | 2 cut(s) | 1019, 1835 |
| PmlI | CACGTG | 2 cut(s) | 1019, 1835 |
| Ppu21I | YACGTR | 2 cut(s) | 1019, 1835 |
| PpuMI | RGGWCCY | 1 cut(s) | 786 |
| PscI | ACATGT | 1 cut(s) | 585 |
| Psp5II | RGGWCCY | 1 cut(s) | 786 |
| Psp6I | CCWGG | 7 cut(s) | 819, 1101, 1689, 1710, 1740, 1976, 2358 |
| PspCI | CACGTG | 2 cut(s) | 1019, 1835 |
| PspFI | CCCAGC | 5 cut(s) | 1250, 1367, 2114, 2178, 2313 |
| PspGI | CCWGG | 7 cut(s) | 819, 1101, 1689, 1710, 1740, 1976, 2358 |
| PspOMI | GGGCCC | 2 cut(s) | 1473, 2118 |
| PspPPI | RGGWCCY | 1 cut(s) | 786 |
| PspXI | VCTCGAGB | 1 cut(s) | 2373 |
| PstI | CTGCAG | 3 cut(s) | 704, 1828, 1962 |
| PstNI | CAGNNNCTG | 4 cut(s) | 942, 1711, 1801, 2054 |
| PsuI | RGATCY | 2 cut(s) | 1331, 1737 |
| PsyI | GACNNNGTC | 2 cut(s) | 1500, 1883 |
| RsaI | GTAC | 2 cut(s) | 337, 401 |
| RsaNI | GTAC | 2 cut(s) | 336, 400 |
| RseI | CAYNNNNRTG | 1 cut(s) | 669 |
| SaqAI | TTAA | 2 cut(s) | 858, 1169 |
| Sau3AI | GATC | 5 cut(s) | 747, 1089, 1331, 1737, 1947 |
| SduI | GDGCHC | 6 cut(s) | 486, 528, 1317, 1477, 2122, 2269 |
| SexAI | ACCWGGT | 1 cut(s) | 819 |
| SfaNI | GCATC | 6 cut(s) | 447, 461, 1216, 1810, 1819, 2127 |
| SfcI | CTRYAG | 3 cut(s) | 700, 1824, 1958 |
| Sfr274I | CTCGAG | 1 cut(s) | 2373 |
| SgrAI | CRCCGGYG | 1 cut(s) | 2230 |
| SinI | GGWCC | 7 cut(s) | 641, 786, 828, 1078, 1353, 1502, 2035 |
| SlaI | CTCGAG | 1 cut(s) | 2373 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 669 |
| SmlI | CTYRAG | 3 cut(s) | 1508, 1748, 2373 |
| SmoI | CTYRAG | 3 cut(s) | 1508, 1748, 2373 |
| Sse9I | AATT | 7 cut(s) | 537, 573, 715, 754, 1096, 1559, 1778 |
| SspI | AATATT | 1 cut(s) | 75 |
| SspMI | CTAG | 8 cut(s) | 131, 201, 248, 252, 630, 1586, 1601, 2123 |
| StyI | CCWWGG | 7 cut(s) | 158, 171, 464, 502, 694, 1219, 1935 |
| TaaI | ACNGT | 7 cut(s) | 260, 439, 649, 1082, 1144, 1550, 2073 |
| TaqII | GACCGA | 1 cut(s) | 1646 |
| TasI | AATT | 7 cut(s) | 537, 573, 715, 754, 1096, 1559, 1778 |
| TfiI | GAWTC | 3 cut(s) | 35, 952, 1150 |
| Tru1I | TTAA | 2 cut(s) | 858, 1169 |
| Tru9I | TTAA | 2 cut(s) | 858, 1169 |
| TscAI | CASTG | 7 cut(s) | 34, 123, 265, 274, 525, 1366, 1555 |
| TseFI | GTSAC | 6 cut(s) | 236, 508, 925, 1189, 1658, 2306 |
| Tsp45I | GTSAC | 6 cut(s) | 236, 508, 925, 1189, 1658, 2306 |
| TspDTI | ATGAA | 4 cut(s) | 380, 687, 1528, 2111 |
| TspGWI | ACGGA | 2 cut(s) | 84, 1388 |
| TspRI | CASTG | 7 cut(s) | 34, 123, 265, 274, 525, 1366, 1555 |
| Tth111I | GACNNNGTC | 2 cut(s) | 1500, 1883 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 588 |
| VneI | GTGCAC | 1 cut(s) | 482 |
| VpaK11BI | GGWCC | 7 cut(s) | 641, 786, 828, 1078, 1353, 1502, 2035 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 1805, 1916 |
| XapI | RAATTY | 5 cut(s) | 537, 573, 715, 754, 1559 |
| XceI | RCATGY | 2 cut(s) | 589, 1909 |
| XhoI | CTCGAG | 1 cut(s) | 2373 |
| XmiI | GTMKAC | 3 cut(s) | 473, 1002, 1283 |
| XspI | CTAG | 8 cut(s) | 131, 201, 248, 252, 630, 1586, 1601, 2123 |