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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 370, 1280 |
| AccBSI | CCGCTC | 2 cut(s) | 754, 895 |
| AccI | GTMKAC | 3 cut(s) | 78, 653, 846 |
| AccII | CGCG | 6 cut(s) | 159, 409, 434, 487, 1010, 1074 |
| AclWI | GGATC | 1 cut(s) | 982 |
| AcoI | YGGCCR | 3 cut(s) | 375, 963, 1080 |
| AcuI | CTGAAG | 3 cut(s) | 661, 803, 977 |
| AcyI | GRCGYC | 3 cut(s) | 135, 371, 731 |
| AfaI | GTAC | 6 cut(s) | 191, 393, 535, 648, 1118, 1258 |
| AgsI | TTSAA | 2 cut(s) | 104, 1277 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 456 |
| AjiI | CACGTC | 1 cut(s) | 517 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 579, 611 |
| AluBI | AGCT | 6 cut(s) | 129, 540, 760, 877, 1088, 1241 |
| AluI | AGCT | 6 cut(s) | 129, 540, 760, 877, 1088, 1241 |
| Alw21I | GWGCWC | 2 cut(s) | 762, 1156 |
| Alw26I | GTCTC | 1 cut(s) | 227 |
| AlwI | GGATC | 1 cut(s) | 982 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 745 |
| Ama87I | CYCGRG | 2 cut(s) | 500, 1288 |
| AspLEI | GCGC | 8 cut(s) | 161, 244, 373, 409, 411, 1076, 1129, 1190 |
| AspS9I | GGNCC | 4 cut(s) | 154, 226, 802, 898 |
| AsuC2I | CCSGG | 3 cut(s) | 230, 959, 1316 |
| AsuHPI | GGTGA | 5 cut(s) | 314, 340, 596, 596, 1052 |
| AvaI | CYCGRG | 2 cut(s) | 500, 1288 |
| AvaII | GGWCC | 3 cut(s) | 154, 226, 898 |
| BanI | GGYRCC | 2 cut(s) | 370, 1280 |
| BanII | GRGCYC | 1 cut(s) | 762 |
| BauI | CACGAG | 3 cut(s) | 93, 713, 867 |
| BbsI | GAAGAC | 1 cut(s) | 221 |
| Bbv12I | GWGCWC | 2 cut(s) | 762, 1156 |
| BccI | CCATC | 3 cut(s) | 214, 299, 300 |
| BceAI | ACGGC | 4 cut(s) | 83, 335, 644, 1046 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 491, 525, 836, 870, 902, 936 |
| BcnI | CCSGG | 3 cut(s) | 230, 959, 1316 |
| BcoDI | GTCTC | 1 cut(s) | 227 |
| BfaI | CTAG | 2 cut(s) | 1034, 1055 |
| BfmI | CTRYAG | 1 cut(s) | 1175 |
| BfoI | RGCGCY | 4 cut(s) | 245, 374, 1130, 1191 |
| BlpI | GCTNAGC | 1 cut(s) | 245 |
| BmcAI | AGTACT | 1 cut(s) | 1258 |
| Bme18I | GGWCC | 3 cut(s) | 154, 226, 898 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 456 |
| BmeT110I | CYCGRG | 2 cut(s) | 500, 1288 |
| BmgBI | CACGTC | 1 cut(s) | 517 |
| BmgT120I | GGNCC | 4 cut(s) | 154, 226, 802, 898 |
| BmiI | GGNNCC | 9 cut(s) | 228, 261, 372, 444, 495, 507, 899, 1070, 1282 |
| BmrI | ACTGGG | 1 cut(s) | 1207 |
| BmsI | GCATC | 3 cut(s) | 18, 844, 1338 |
| BmuI | ACTGGG | 1 cut(s) | 1207 |
| BoxI | GACNNNNGTC | 1 cut(s) | 659 |
| BpiI | GAAGAC | 1 cut(s) | 221 |
| BpmI | CTGGAG | 3 cut(s) | 498, 656, 746 |
| Bpu10I | CCTNAGC | 1 cut(s) | 761 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 245 |
| BpuMI | CCSGG | 3 cut(s) | 230, 959, 1316 |
| BsaHI | GRCGYC | 3 cut(s) | 135, 371, 731 |
| BsaJI | CCNNGG | 9 cut(s) | 138, 150, 432, 501, 744, 804, 1020, 1233, 1264 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1377, 1407 |
| Bse118I | RCCGGY | 2 cut(s) | 373, 1148 |
| Bse1I | ACTGG | 4 cut(s) | 243, 263, 337, 1202 |
| Bse3DI | GCAATG | 1 cut(s) | 1329 |
| BseDI | CCNNGG | 9 cut(s) | 138, 150, 432, 501, 744, 804, 1020, 1233, 1264 |
| BseMI | GCAATG | 1 cut(s) | 1329 |
| BseMII | CTCAG | 4 cut(s) | 224, 246, 452, 775 |
| BseNI | ACTGG | 4 cut(s) | 243, 263, 337, 1202 |
| BsePI | GCGCGC | 1 cut(s) | 407 |
| BseRI | GAGGAG | 1 cut(s) | 782 |
| BseX3I | CGGCCG | 1 cut(s) | 1080 |
| BseYI | CCCAGC | 3 cut(s) | 63, 412, 1338 |
| BsgI | GTGCAG | 1 cut(s) | 695 |
| Bsh1236I | CGCG | 6 cut(s) | 159, 409, 434, 487, 1010, 1074 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1083 |
| BshNI | GGYRCC | 2 cut(s) | 370, 1280 |
| BsiEI | CGRYCG | 1 cut(s) | 1083 |
| BsiHKAI | GWGCWC | 2 cut(s) | 762, 1156 |
| BsiHKCI | CYCGRG | 2 cut(s) | 500, 1288 |
| BsiSI | CCGG | 6 cut(s) | 113, 230, 374, 958, 1149, 1316 |
| BslFI | GGGAC | 2 cut(s) | 911, 928 |
| BsmAI | GTCTC | 1 cut(s) | 227 |
| BsmFI | GGGAC | 2 cut(s) | 911, 928 |
| BsoBI | CYCGRG | 2 cut(s) | 500, 1288 |
| Bsp1286I | GDGCHC | 2 cut(s) | 762, 1156 |
| Bsp143I | GATC | 1 cut(s) | 987 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 245 |
| Bsp19I | CCATGG | 1 cut(s) | 150 |
| BspCNI | CTCAG | 4 cut(s) | 223, 247, 453, 774 |
| BspFNI | CGCG | 6 cut(s) | 159, 409, 434, 487, 1010, 1074 |
| BspLI | GGNNCC | 9 cut(s) | 228, 261, 372, 444, 495, 507, 899, 1070, 1282 |
| BspMAI | CTGCAG | 1 cut(s) | 1179 |
| BspPI | GGATC | 1 cut(s) | 982 |
| BspT107I | GGYRCC | 2 cut(s) | 370, 1280 |
| BsrBI | CCGCTC | 2 cut(s) | 754, 895 |
| BsrDI | GCAATG | 1 cut(s) | 1329 |
| BsrFI | RCCGGY | 2 cut(s) | 373, 1148 |
| BsrI | ACTGG | 4 cut(s) | 243, 263, 337, 1202 |
| BssAI | RCCGGY | 2 cut(s) | 373, 1148 |
| BssECI | CCNNGG | 9 cut(s) | 138, 150, 432, 501, 744, 804, 1020, 1233, 1264 |
| BssHII | GCGCGC | 1 cut(s) | 407 |
| BssMI | GATC | 1 cut(s) | 987 |
| BssNI | GRCGYC | 3 cut(s) | 135, 371, 731 |
| BssSI | CACGAG | 3 cut(s) | 93, 713, 867 |
| BssT1I | CCWWGG | 2 cut(s) | 138, 150 |
| Bst2BI | CACGAG | 3 cut(s) | 93, 713, 867 |
| Bst4CI | ACNGT | 3 cut(s) | 584, 651, 851 |
| Bst6I | CTCTTC | 2 cut(s) | 57, 779 |
| BstACI | GRCGYC | 3 cut(s) | 135, 371, 731 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1174 |
| BstDEI | CTNAG | 5 cut(s) | 210, 245, 255, 461, 761 |
| BstDSI | CCRYGG | 2 cut(s) | 150, 432 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 611 |
| BstFNI | CGCG | 6 cut(s) | 159, 409, 434, 487, 1010, 1074 |
| BstH2I | RGCGCY | 4 cut(s) | 245, 374, 1130, 1191 |
| BstHHI | GCGC | 8 cut(s) | 161, 244, 373, 409, 411, 1076, 1129, 1190 |
| BstKTI | GATC | 1 cut(s) | 990 |
| BstMAI | GTCTC | 1 cut(s) | 227 |
| BstMBI | GATC | 1 cut(s) | 987 |
| BstMCI | CGRYCG | 1 cut(s) | 1083 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 659 |
| BstSFI | CTRYAG | 1 cut(s) | 1175 |
| BstUI | CGCG | 6 cut(s) | 159, 409, 434, 487, 1010, 1074 |
| BstV2I | GAAGAC | 1 cut(s) | 221 |
| BstX2I | RGATCY | 1 cut(s) | 987 |
| BstYI | RGATCY | 1 cut(s) | 987 |
| BstZI | CGGCCG | 1 cut(s) | 1080 |
| BtgI | CCRYGG | 2 cut(s) | 150, 432 |
| BtrI | CACGTC | 1 cut(s) | 517 |
| BtsI | GCAGTG | 1 cut(s) | 426 |
| BtsIMutI | CAGTG | 3 cut(s) | 236, 270, 426 |
| CaiI | CAGNNNCTG | 1 cut(s) | 745 |
| CciNI | GCGGCCGC | 1 cut(s) | 1080 |
| CfoI | GCGC | 8 cut(s) | 161, 244, 373, 409, 411, 1076, 1129, 1190 |
| Cfr10I | RCCGGY | 2 cut(s) | 373, 1148 |
| Cfr13I | GGNCC | 4 cut(s) | 154, 226, 802, 898 |
| Cfr42I | CCGCGG | 1 cut(s) | 435 |
| CseI | GACGC | 2 cut(s) | 143, 720 |
| Csp6I | GTAC | 6 cut(s) | 190, 392, 534, 647, 1117, 1257 |
| CviAII | CATG | 5 cut(s) | 151, 187, 277, 682, 1271 |
| CviQI | GTAC | 6 cut(s) | 190, 392, 534, 647, 1117, 1257 |
| DdeI | CTNAG | 5 cut(s) | 210, 245, 255, 461, 761 |
| DinI | GGCGCC | 1 cut(s) | 372 |
| DpnI | GATC | 1 cut(s) | 989 |
| DpnII | GATC | 1 cut(s) | 987 |
| DriI | GACNNNNNGTC | 1 cut(s) | 456 |
| EaeI | YGGCCR | 3 cut(s) | 375, 963, 1080 |
| EagI | CGGCCG | 1 cut(s) | 1080 |
| Eam1104I | CTCTTC | 2 cut(s) | 57, 779 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 456 |
| EarI | CTCTTC | 2 cut(s) | 57, 779 |
| EciI | GGCGGA | 5 cut(s) | 40, 486, 1076, 1233, 1323 |
| Ecl136II | GAGCTC | 1 cut(s) | 760 |
| EclXI | CGGCCG | 1 cut(s) | 1080 |
| Eco130I | CCWWGG | 2 cut(s) | 138, 150 |
| Eco147I | AGGCCT | 2 cut(s) | 466, 780 |
| Eco24I | GRGCYC | 1 cut(s) | 762 |
| Eco47I | GGWCC | 3 cut(s) | 154, 226, 898 |
| Eco52I | CGGCCG | 1 cut(s) | 1080 |
| Eco53kI | GAGCTC | 1 cut(s) | 760 |
| Eco57I | CTGAAG | 3 cut(s) | 661, 803, 977 |
| Eco88I | CYCGRG | 2 cut(s) | 500, 1288 |
| EcoICRI | GAGCTC | 1 cut(s) | 760 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 611 |
| EcoO109I | RGGNCCY | 1 cut(s) | 898 |
| EcoT14I | CCWWGG | 2 cut(s) | 138, 150 |
| EcoT38I | GRGCYC | 1 cut(s) | 762 |
| EgeI | GGCGCC | 1 cut(s) | 372 |
| EheI | GGCGCC | 1 cut(s) | 372 |
| ErhI | CCWWGG | 2 cut(s) | 138, 150 |
| FaeI | CATG | 5 cut(s) | 154, 190, 280, 685, 1274 |
| FaqI | GGGAC | 2 cut(s) | 911, 928 |
| FatI | CATG | 5 cut(s) | 150, 186, 276, 681, 1270 |
| FauI | CCCGC | 7 cut(s) | 427, 480, 481, 523, 747, 888, 990 |
| FblI | GTMKAC | 3 cut(s) | 78, 653, 846 |
| FriOI | GRGCYC | 1 cut(s) | 762 |
| FspBI | CTAG | 2 cut(s) | 1034, 1055 |
| GlaI | GCGC | 8 cut(s) | 160, 243, 372, 408, 410, 1075, 1128, 1189 |
| GsaI | CCCAGC | 3 cut(s) | 67, 416, 1342 |
| GsuI | CTGGAG | 3 cut(s) | 498, 656, 746 |
| HaeII | RGCGCY | 4 cut(s) | 245, 374, 1130, 1191 |
| HapII | CCGG | 6 cut(s) | 113, 230, 374, 958, 1149, 1316 |
| HgaI | GACGC | 2 cut(s) | 143, 720 |
| HhaI | GCGC | 8 cut(s) | 161, 244, 373, 409, 411, 1076, 1129, 1190 |
| Hin1I | GRCGYC | 3 cut(s) | 135, 371, 731 |
| Hin1II | CATG | 5 cut(s) | 154, 190, 280, 685, 1274 |
| Hin6I | GCGC | 8 cut(s) | 159, 242, 371, 407, 409, 1074, 1127, 1188 |
| HinP1I | GCGC | 8 cut(s) | 159, 242, 371, 407, 409, 1074, 1127, 1188 |
| HincII | GTYRAC | 4 cut(s) | 79, 654, 664, 847 |
| HindII | GTYRAC | 4 cut(s) | 79, 654, 664, 847 |
| HinfI | GANTC | 8 cut(s) | 28, 91, 182, 548, 863, 1001, 1094, 1311 |
| HpaII | CCGG | 6 cut(s) | 113, 230, 374, 958, 1149, 1316 |
| HphI | GGTGA | 5 cut(s) | 314, 340, 596, 596, 1052 |
| Hpy166II | GTNNAC | 6 cut(s) | 79, 226, 587, 654, 664, 847 |
| Hpy188I | TCNGA | 3 cut(s) | 213, 256, 462 |
| Hpy188III | TCNNGA | 2 cut(s) | 574, 1363 |
| Hpy8I | GTNNAC | 6 cut(s) | 79, 226, 587, 654, 664, 847 |
| Hpy99I | CGWCG | 2 cut(s) | 454, 707 |
| HpyCH4III | ACNGT | 3 cut(s) | 584, 651, 851 |
| HpyCH4IV | ACGT | 2 cut(s) | 516, 1367 |
| HpyCH4V | TGCA | 4 cut(s) | 712, 857, 1168, 1177 |
| HpyF3I | CTNAG | 5 cut(s) | 210, 245, 255, 461, 761 |
| HpySE526I | ACGT | 2 cut(s) | 516, 1367 |
| Hsp92I | GRCGYC | 3 cut(s) | 135, 371, 731 |
| Hsp92II | CATG | 5 cut(s) | 154, 190, 280, 685, 1274 |
| HspAI | GCGC | 8 cut(s) | 159, 242, 371, 407, 409, 1074, 1127, 1188 |
| KasI | GGCGCC | 1 cut(s) | 370 |
| KroI | GCCGGC | 1 cut(s) | 373 |
| KroNI | GCCGGC | 1 cut(s) | 375 |
| KspI | CCGCGG | 1 cut(s) | 435 |
| Kzo9I | GATC | 1 cut(s) | 987 |
| LmnI | GCTCC | 8 cut(s) | 442, 499, 511, 757, 826, 1068, 1246, 1385 |
| LweI | GCATC | 3 cut(s) | 18, 844, 1338 |
| MaeI | CTAG | 2 cut(s) | 1034, 1055 |
| MaeII | ACGT | 2 cut(s) | 516, 1367 |
| MaeIII | GTNAC | 3 cut(s) | 131, 328, 424 |
| MalI | GATC | 1 cut(s) | 989 |
| MbiI | CCGCTC | 2 cut(s) | 754, 895 |
| MboI | GATC | 1 cut(s) | 987 |
| MboII | GAAGA | 4 cut(s) | 44, 226, 409, 796 |
| MflI | RGATCY | 1 cut(s) | 987 |
| MhlI | GDGCHC | 2 cut(s) | 762, 1156 |
| MluCI | AATT | 6 cut(s) | 165, 172, 917, 926, 1327, 1353 |
| Mly113I | GGCGCC | 1 cut(s) | 371 |
| MlyI | GAGTC | 6 cut(s) | 85, 542, 857, 1010, 1103, 1305 |
| MmeI | TCCRAC | 1 cut(s) | 420 |
| MroNI | GCCGGC | 1 cut(s) | 373 |
| MseI | TTAA | 2 cut(s) | 836, 1026 |
| MspA1I | CMGCKG | 6 cut(s) | 416, 434, 476, 997, 1088, 1112 |
| MspI | CCGG | 6 cut(s) | 113, 230, 374, 958, 1149, 1316 |
| MvnI | CGCG | 6 cut(s) | 159, 409, 434, 487, 1010, 1074 |
| NaeI | GCCGGC | 1 cut(s) | 375 |
| NarI | GGCGCC | 1 cut(s) | 371 |
| NciI | CCSGG | 3 cut(s) | 230, 959, 1316 |
| NcoI | CCATGG | 1 cut(s) | 150 |
| NdeII | GATC | 1 cut(s) | 987 |
| NgoMIV | GCCGGC | 1 cut(s) | 373 |
| NlaIII | CATG | 5 cut(s) | 154, 190, 280, 685, 1274 |
| NlaIV | GGNNCC | 9 cut(s) | 228, 261, 372, 444, 495, 507, 899, 1070, 1282 |
| NmeAIII | GCCGAG | 2 cut(s) | 592, 1045 |
| NmuCI | GTSAC | 3 cut(s) | 131, 328, 424 |
| NotI | GCGGCCGC | 1 cut(s) | 1080 |
| PauI | GCGCGC | 1 cut(s) | 407 |
| PceI | AGGCCT | 2 cut(s) | 466, 780 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 711 |
| PdiI | GCCGGC | 1 cut(s) | 375 |
| PfeI | GAWTC | 2 cut(s) | 28, 182 |
| PfoI | TCCNGGA | 4 cut(s) | 177, 321, 723, 1314 |
| PleI | GAGTC | 6 cut(s) | 85, 542, 857, 1009, 1102, 1305 |
| PluTI | GGCGCC | 1 cut(s) | 374 |
| PpsI | GAGTC | 6 cut(s) | 85, 542, 857, 1009, 1102, 1305 |
| PpuMI | RGGWCCY | 1 cut(s) | 898 |
| PshAI | GACNNNNGTC | 1 cut(s) | 659 |
| Psp124BI | GAGCTC | 1 cut(s) | 762 |
| Psp5II | RGGWCCY | 1 cut(s) | 898 |
| PspFI | CCCAGC | 3 cut(s) | 63, 412, 1338 |
| PspN4I | GGNNCC | 9 cut(s) | 228, 261, 372, 444, 495, 507, 899, 1070, 1282 |
| PspPI | GGNCC | 4 cut(s) | 154, 226, 802, 898 |
| PspPPI | RGGWCCY | 1 cut(s) | 898 |
| PstI | CTGCAG | 1 cut(s) | 1179 |
| PstNI | CAGNNNCTG | 1 cut(s) | 745 |
| PsuI | RGATCY | 1 cut(s) | 987 |
| PteI | GCGCGC | 1 cut(s) | 407 |
| PvuII | CAGCTG | 1 cut(s) | 1088 |
| RsaI | GTAC | 6 cut(s) | 191, 393, 535, 648, 1118, 1258 |
| RsaNI | GTAC | 6 cut(s) | 190, 392, 534, 647, 1117, 1257 |
| SacI | GAGCTC | 1 cut(s) | 762 |
| SacII | CCGCGG | 1 cut(s) | 435 |
| SalI | GTCGAC | 3 cut(s) | 77, 652, 845 |
| SaqAI | TTAA | 2 cut(s) | 836, 1026 |
| Sau3AI | GATC | 1 cut(s) | 987 |
| Sau96I | GGNCC | 4 cut(s) | 154, 226, 802, 898 |
| ScaI | AGTACT | 1 cut(s) | 1258 |
| SchI | GAGTC | 6 cut(s) | 85, 542, 857, 1010, 1103, 1305 |
| SduI | GDGCHC | 2 cut(s) | 762, 1156 |
| SfaNI | GCATC | 3 cut(s) | 18, 844, 1338 |
| SfcI | CTRYAG | 1 cut(s) | 1175 |
| SfoI | GGCGCC | 1 cut(s) | 372 |
| Sfr303I | CCGCGG | 1 cut(s) | 435 |
| SgrBI | CCGCGG | 1 cut(s) | 435 |
| SinI | GGWCC | 3 cut(s) | 154, 226, 898 |
| Sse9I | AATT | 6 cut(s) | 165, 172, 917, 926, 1327, 1353 |
| SseBI | AGGCCT | 2 cut(s) | 466, 780 |
| SspDI | GGCGCC | 1 cut(s) | 370 |
| SspMI | CTAG | 2 cut(s) | 1034, 1055 |
| SstI | GAGCTC | 1 cut(s) | 762 |
| StuI | AGGCCT | 2 cut(s) | 466, 780 |
| StyI | CCWWGG | 2 cut(s) | 138, 150 |
| TaaI | ACNGT | 3 cut(s) | 584, 651, 851 |
| TaiI | ACGT | 2 cut(s) | 519, 1370 |
| TaqI | TCGA | 3 cut(s) | 78, 653, 846 |
| TaqII | GACCGA | 1 cut(s) | 1148 |
| TasI | AATT | 6 cut(s) | 165, 172, 917, 926, 1327, 1353 |
| TatI | WGTACW | 3 cut(s) | 646, 1116, 1256 |
| TfiI | GAWTC | 2 cut(s) | 28, 182 |
| Tru1I | TTAA | 2 cut(s) | 836, 1026 |
| Tru9I | TTAA | 2 cut(s) | 836, 1026 |
| TscAI | CASTG | 3 cut(s) | 243, 270, 433 |
| TseFI | GTSAC | 3 cut(s) | 131, 328, 424 |
| Tsp45I | GTSAC | 3 cut(s) | 131, 328, 424 |
| TspDTI | ATGAA | 2 cut(s) | 536, 1340 |
| TspGWI | ACGGA | 2 cut(s) | 691, 922 |
| TspRI | CASTG | 3 cut(s) | 243, 270, 433 |
| VpaK11BI | GGWCC | 3 cut(s) | 154, 226, 898 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 611 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 293, 329, 1359 |
| XmiI | GTMKAC | 3 cut(s) | 78, 653, 846 |
| XspI | CTAG | 2 cut(s) | 1034, 1055 |
| ZrmI | AGTACT | 1 cut(s) | 1258 |