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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 749 |
| AccB1I | GGYRCC | 2 cut(s) | 488, 617 |
| AccBSI | CCGCTC | 2 cut(s) | 624, 642 |
| AccII | CGCG | 2 cut(s) | 587, 771 |
| AcoI | YGGCCR | 3 cut(s) | 24, 417, 495 |
| AcsI | RAATTY | 1 cut(s) | 353 |
| AfaI | GTAC | 2 cut(s) | 742, 763 |
| AfeI | AGCGCT | 1 cut(s) | 323 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 12 |
| AflIII | ACRYGT | 1 cut(s) | 67 |
| AgsI | TTSAA | 2 cut(s) | 65, 514 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 789 |
| AjnI | CCWGG | 3 cut(s) | 232, 296, 399 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 120, 133, 152, 165 |
| AluBI | AGCT | 3 cut(s) | 89, 203, 719 |
| AluI | AGCT | 3 cut(s) | 89, 203, 719 |
| Alw26I | GTCTC | 1 cut(s) | 703 |
| Ama87I | CYCGRG | 1 cut(s) | 692 |
| Aor51HI | AGCGCT | 1 cut(s) | 323 |
| AoxI | GGCC | 7 cut(s) | 24, 381, 417, 462, 483, 495, 560 |
| ApaI | GGGCCC | 1 cut(s) | 385 |
| ApeKI | GCWGC | 2 cut(s) | 86, 262 |
| ApoI | RAATTY | 1 cut(s) | 353 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 69 |
| AspLEI | GCGC | 2 cut(s) | 324, 736 |
| AspS9I | GGNCC | 4 cut(s) | 381, 382, 560, 650 |
| AsuC2I | CCSGG | 1 cut(s) | 339 |
| AsuHPI | GGTGA | 2 cut(s) | 222, 490 |
| AvaI | CYCGRG | 1 cut(s) | 692 |
| AvaII | GGWCC | 1 cut(s) | 650 |
| BaeGI | GKGCMC | 2 cut(s) | 385, 622 |
| BalI | TGGCCA | 1 cut(s) | 497 |
| BanI | GGYRCC | 2 cut(s) | 488, 617 |
| BanII | GRGCYC | 1 cut(s) | 385 |
| BbvCI | CCTCAGC | 1 cut(s) | 612 |
| BbvI | GCAGC | 2 cut(s) | 98, 249 |
| BccI | CCATC | 2 cut(s) | 226, 571 |
| BceAI | ACGGC | 1 cut(s) | 774 |
| BciT130I | CCWGG | 3 cut(s) | 234, 298, 401 |
| BciVI | GTATCC | 1 cut(s) | 407 |
| BcnI | CCSGG | 1 cut(s) | 339 |
| BcoDI | GTCTC | 1 cut(s) | 703 |
| BfaI | CTAG | 4 cut(s) | 164, 176, 716, 799 |
| BfmI | CTRYAG | 1 cut(s) | 198 |
| BfoI | RGCGCY | 1 cut(s) | 325 |
| BfuI | GTATCC | 1 cut(s) | 407 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 389, 559 |
| BisI | GCNGC | 6 cut(s) | 87, 263, 414, 417, 420, 634 |
| BlsI | GCNGC | 6 cut(s) | 88, 264, 415, 418, 421, 635 |
| Bme1390I | CCNGG | 4 cut(s) | 234, 298, 339, 401 |
| Bme18I | GGWCC | 1 cut(s) | 650 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 789 |
| BmeT110I | CYCGRG | 1 cut(s) | 692 |
| BmgT120I | GGNCC | 4 cut(s) | 381, 382, 560, 650 |
| BmiI | GGNNCC | 6 cut(s) | 383, 384, 490, 600, 619, 651 |
| BmrFI | CCNGG | 4 cut(s) | 234, 298, 339, 401 |
| BmsI | GCATC | 1 cut(s) | 554 |
| Bpu10I | CCTNAGC | 2 cut(s) | 612, 625 |
| BpuEI | CTTGAG | 1 cut(s) | 287 |
| BpuMI | CCSGG | 1 cut(s) | 339 |
| BsaI | GGTCTC | 1 cut(s) | 703 |
| BsaJI | CCNNGG | 3 cut(s) | 400, 492, 693 |
| BsaWI | WCCGGW | 1 cut(s) | 5 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 12 |
| Bse118I | RCCGGY | 1 cut(s) | 485 |
| BseBI | CCWGG | 3 cut(s) | 234, 298, 401 |
| BseDI | CCNNGG | 3 cut(s) | 400, 492, 693 |
| BseGI | GGATG | 3 cut(s) | 218, 545, 598 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 12 |
| BseMII | CTCAG | 3 cut(s) | 603, 639, 701 |
| BseSI | GKGCMC | 2 cut(s) | 385, 622 |
| BseX3I | CGGCCG | 2 cut(s) | 24, 417 |
| BseXI | GCAGC | 2 cut(s) | 98, 249 |
| BseYI | CCCAGC | 2 cut(s) | 549, 557 |
| Bsh1236I | CGCG | 2 cut(s) | 587, 771 |
| Bsh1285I | CGRYCG | 2 cut(s) | 27, 420 |
| BshFI | GGCC | 7 cut(s) | 26, 383, 419, 464, 485, 497, 562 |
| BshNI | GGYRCC | 2 cut(s) | 488, 617 |
| BsiEI | CGRYCG | 2 cut(s) | 27, 420 |
| BsiHKCI | CYCGRG | 1 cut(s) | 692 |
| BsiSI | CCGG | 7 cut(s) | 6, 13, 23, 27, 338, 486, 653 |
| BslFI | GGGAC | 4 cut(s) | 142, 171, 200, 229 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 12 |
| BsmAI | GTCTC | 1 cut(s) | 703 |
| BsmFI | GGGAC | 4 cut(s) | 142, 171, 200, 229 |
| BsnI | GGCC | 7 cut(s) | 26, 383, 419, 464, 485, 497, 562 |
| Bso31I | GGTCTC | 1 cut(s) | 703 |
| BsoBI | CYCGRG | 1 cut(s) | 692 |
| Bsp120I | GGGCCC | 1 cut(s) | 381 |
| Bsp1286I | GDGCHC | 2 cut(s) | 385, 622 |
| Bsp143I | GATC | 2 cut(s) | 97, 778 |
| Bsp19I | CCATGG | 1 cut(s) | 492 |
| Bsp68I | TCGCGA | 1 cut(s) | 771 |
| BspANI | GGCC | 7 cut(s) | 26, 383, 419, 464, 485, 497, 562 |
| BspCNI | CTCAG | 3 cut(s) | 604, 638, 700 |
| BspFNI | CGCG | 2 cut(s) | 587, 771 |
| BspLI | GGNNCC | 6 cut(s) | 383, 384, 490, 600, 619, 651 |
| BspT107I | GGYRCC | 2 cut(s) | 488, 617 |
| BspTNI | GGTCTC | 1 cut(s) | 703 |
| BsrBI | CCGCTC | 2 cut(s) | 624, 642 |
| BsrFI | RCCGGY | 1 cut(s) | 485 |
| BssAI | RCCGGY | 1 cut(s) | 485 |
| BssECI | CCNNGG | 3 cut(s) | 400, 492, 693 |
| BssMI | GATC | 2 cut(s) | 97, 778 |
| BssT1I | CCWWGG | 1 cut(s) | 492 |
| Bst2UI | CCWGG | 3 cut(s) | 234, 298, 401 |
| Bst4CI | ACNGT | 2 cut(s) | 510, 740 |
| BstC8I | GCNNGC | 5 cut(s) | 390, 555, 585, 622, 709 |
| BstDEI | CTNAG | 3 cut(s) | 612, 625, 687 |
| BstDSI | CCRYGG | 1 cut(s) | 492 |
| BstF5I | GGATG | 3 cut(s) | 218, 545, 598 |
| BstFNI | CGCG | 2 cut(s) | 587, 771 |
| BstH2I | RGCGCY | 1 cut(s) | 325 |
| BstHHI | GCGC | 2 cut(s) | 324, 736 |
| BstKTI | GATC | 2 cut(s) | 100, 781 |
| BstMAI | GTCTC | 1 cut(s) | 703 |
| BstMBI | GATC | 2 cut(s) | 97, 778 |
| BstMCI | CGRYCG | 2 cut(s) | 27, 420 |
| BstNI | CCWGG | 3 cut(s) | 234, 298, 401 |
| BstSCI | CCNGG | 4 cut(s) | 232, 296, 337, 399 |
| BstSFI | CTRYAG | 1 cut(s) | 198 |
| BstSLI | GKGCMC | 2 cut(s) | 385, 622 |
| BstUI | CGCG | 2 cut(s) | 587, 771 |
| BstV1I | GCAGC | 2 cut(s) | 98, 249 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 557 |
| BstZI | CGGCCG | 2 cut(s) | 24, 417 |
| BsuI | GTATCC | 1 cut(s) | 407 |
| BsuRI | GGCC | 7 cut(s) | 26, 383, 419, 464, 485, 497, 562 |
| BtgI | CCRYGG | 1 cut(s) | 492 |
| BtsCI | GGATG | 3 cut(s) | 218, 545, 598 |
| BtsIMutI | CAGTG | 1 cut(s) | 736 |
| BtuMI | TCGCGA | 1 cut(s) | 771 |
| Cac8I | GCNNGC | 5 cut(s) | 390, 555, 585, 622, 709 |
| CciNI | GCGGCCGC | 1 cut(s) | 417 |
| CfoI | GCGC | 2 cut(s) | 324, 736 |
| Cfr10I | RCCGGY | 1 cut(s) | 485 |
| Cfr13I | GGNCC | 4 cut(s) | 381, 382, 560, 650 |
| CseI | GACGC | 1 cut(s) | 282 |
| CsiI | ACCWGGT | 1 cut(s) | 232 |
| Csp6I | GTAC | 2 cut(s) | 741, 762 |
| CviAII | CATG | 3 cut(s) | 266, 466, 493 |
| CviQI | GTAC | 2 cut(s) | 741, 762 |
| DdeI | CTNAG | 3 cut(s) | 612, 625, 687 |
| DpnI | GATC | 2 cut(s) | 99, 780 |
| DpnII | GATC | 2 cut(s) | 97, 778 |
| DriI | GACNNNNNGTC | 1 cut(s) | 789 |
| EaeI | YGGCCR | 3 cut(s) | 24, 417, 495 |
| EagI | CGGCCG | 2 cut(s) | 24, 417 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 789 |
| EciI | GGCGGA | 2 cut(s) | 464, 671 |
| EclXI | CGGCCG | 2 cut(s) | 24, 417 |
| Eco130I | CCWWGG | 1 cut(s) | 492 |
| Eco24I | GRGCYC | 1 cut(s) | 385 |
| Eco31I | GGTCTC | 1 cut(s) | 703 |
| Eco47I | GGWCC | 1 cut(s) | 650 |
| Eco47III | AGCGCT | 1 cut(s) | 323 |
| Eco52I | CGGCCG | 2 cut(s) | 24, 417 |
| Eco88I | CYCGRG | 1 cut(s) | 692 |
| EcoO109I | RGGNCCY | 1 cut(s) | 382 |
| EcoRII | CCWGG | 3 cut(s) | 232, 296, 399 |
| EcoT14I | CCWWGG | 1 cut(s) | 492 |
| EcoT38I | GRGCYC | 1 cut(s) | 385 |
| ErhI | CCWWGG | 1 cut(s) | 492 |
| FaeI | CATG | 3 cut(s) | 269, 469, 496 |
| FaiI | YATR | 7 cut(s) | 105, 126, 267, 467, 494, 647, 749 |
| FaqI | GGGAC | 4 cut(s) | 142, 171, 200, 229 |
| FatI | CATG | 3 cut(s) | 265, 465, 492 |
| FauI | CCCGC | 4 cut(s) | 393, 562, 592, 629 |
| Fnu4HI | GCNGC | 6 cut(s) | 87, 263, 414, 417, 420, 634 |
| FokI | GGATG | 3 cut(s) | 205, 532, 605 |
| FriOI | GRGCYC | 1 cut(s) | 385 |
| Fsp4HI | GCNGC | 6 cut(s) | 87, 263, 414, 417, 420, 634 |
| FspBI | CTAG | 4 cut(s) | 164, 176, 716, 799 |
| GlaI | GCGC | 2 cut(s) | 323, 735 |
| GluI | GCNGC | 6 cut(s) | 87, 263, 414, 417, 420, 634 |
| GsaI | CCCAGC | 2 cut(s) | 553, 561 |
| HaeII | RGCGCY | 1 cut(s) | 325 |
| HaeIII | GGCC | 7 cut(s) | 26, 383, 419, 464, 485, 497, 562 |
| HapII | CCGG | 7 cut(s) | 6, 13, 23, 27, 338, 486, 653 |
| HgaI | GACGC | 1 cut(s) | 282 |
| HhaI | GCGC | 2 cut(s) | 324, 736 |
| Hin1II | CATG | 3 cut(s) | 269, 469, 496 |
| Hin6I | GCGC | 2 cut(s) | 322, 734 |
| HinP1I | GCGC | 2 cut(s) | 322, 734 |
| HinfI | GANTC | 5 cut(s) | 30, 257, 514, 662, 773 |
| HpaII | CCGG | 7 cut(s) | 6, 13, 23, 27, 338, 486, 653 |
| HphI | GGTGA | 2 cut(s) | 222, 490 |
| Hpy188I | TCNGA | 5 cut(s) | 223, 278, 519, 778, 783 |
| Hpy188III | TCNNGA | 3 cut(s) | 193, 251, 770 |
| HpyAV | CCTTC | 5 cut(s) | 170, 257, 454, 475, 514 |
| HpyCH4III | ACNGT | 2 cut(s) | 510, 740 |
| HpyCH4IV | ACGT | 3 cut(s) | 67, 377, 409 |
| HpyCH4V | TGCA | 3 cut(s) | 86, 265, 578 |
| HpyF3I | CTNAG | 3 cut(s) | 612, 625, 687 |
| HpySE526I | ACGT | 3 cut(s) | 67, 377, 409 |
| Hsp92II | CATG | 3 cut(s) | 269, 469, 496 |
| HspAI | GCGC | 2 cut(s) | 322, 734 |
| Kzo9I | GATC | 2 cut(s) | 97, 778 |
| Lsp1109I | GCAGC | 2 cut(s) | 98, 249 |
| LweI | GCATC | 1 cut(s) | 554 |
| MabI | ACCWGGT | 1 cut(s) | 232 |
| MaeI | CTAG | 4 cut(s) | 164, 176, 716, 799 |
| MaeII | ACGT | 3 cut(s) | 67, 377, 409 |
| MaeIII | GTNAC | 1 cut(s) | 228 |
| MalI | GATC | 2 cut(s) | 99, 780 |
| MbiI | CCGCTC | 2 cut(s) | 624, 642 |
| MboI | GATC | 2 cut(s) | 97, 778 |
| MhlI | GDGCHC | 2 cut(s) | 385, 622 |
| MlsI | TGGCCA | 1 cut(s) | 497 |
| MluCI | AATT | 1 cut(s) | 353 |
| MluNI | TGGCCA | 1 cut(s) | 497 |
| MlyI | GAGTC | 3 cut(s) | 251, 656, 782 |
| MnlI | CCTC | 7 cut(s) | 335, 466, 582, 601, 607, 688, 775 |
| Mox20I | TGGCCA | 1 cut(s) | 497 |
| MroXI | GAANNNNTTC | 1 cut(s) | 69 |
| MscI | TGGCCA | 1 cut(s) | 497 |
| MseI | TTAA | 2 cut(s) | 374, 438 |
| Msp20I | TGGCCA | 1 cut(s) | 497 |
| MspA1I | CMGCKG | 1 cut(s) | 557 |
| MspI | CCGG | 7 cut(s) | 6, 13, 23, 27, 338, 486, 653 |
| MspR9I | CCNGG | 4 cut(s) | 234, 298, 339, 401 |
| MvaI | CCWGG | 3 cut(s) | 234, 298, 401 |
| MvnI | CGCG | 2 cut(s) | 587, 771 |
| NciI | CCSGG | 1 cut(s) | 339 |
| NcoI | CCATGG | 1 cut(s) | 492 |
| NdeII | GATC | 2 cut(s) | 97, 778 |
| NlaIII | CATG | 3 cut(s) | 269, 469, 496 |
| NlaIV | GGNNCC | 6 cut(s) | 383, 384, 490, 600, 619, 651 |
| NmeAIII | GCCGAG | 1 cut(s) | 310 |
| NmuCI | GTSAC | 1 cut(s) | 228 |
| NotI | GCGGCCGC | 1 cut(s) | 417 |
| NruI | TCGCGA | 1 cut(s) | 771 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 186 |
| PdmI | GAANNNNTTC | 1 cut(s) | 69 |
| PfeI | GAWTC | 2 cut(s) | 30, 514 |
| PfoI | TCCNGGA | 1 cut(s) | 337 |
| PkrI | GCNGC | 6 cut(s) | 88, 264, 415, 418, 421, 635 |
| PleI | GAGTC | 3 cut(s) | 251, 656, 781 |
| PpsI | GAGTC | 3 cut(s) | 251, 656, 781 |
| PsiI | TTATAA | 1 cut(s) | 749 |
| Psp6I | CCWGG | 3 cut(s) | 232, 296, 399 |
| PspFI | CCCAGC | 2 cut(s) | 549, 557 |
| PspGI | CCWGG | 3 cut(s) | 232, 296, 399 |
| PspN4I | GGNNCC | 6 cut(s) | 383, 384, 490, 600, 619, 651 |
| PspOMI | GGGCCC | 1 cut(s) | 381 |
| PspPI | GGNCC | 4 cut(s) | 381, 382, 560, 650 |
| RruI | TCGCGA | 1 cut(s) | 771 |
| RsaI | GTAC | 2 cut(s) | 742, 763 |
| RsaNI | GTAC | 2 cut(s) | 741, 762 |
| SaqAI | TTAA | 2 cut(s) | 374, 438 |
| SatI | GCNGC | 6 cut(s) | 87, 263, 414, 417, 420, 634 |
| Sau3AI | GATC | 2 cut(s) | 97, 778 |
| Sau96I | GGNCC | 4 cut(s) | 381, 382, 560, 650 |
| SchI | GAGTC | 3 cut(s) | 251, 656, 782 |
| ScrFI | CCNGG | 4 cut(s) | 234, 298, 339, 401 |
| SduI | GDGCHC | 2 cut(s) | 385, 622 |
| SexAI | ACCWGGT | 1 cut(s) | 232 |
| SfaNI | GCATC | 1 cut(s) | 554 |
| SfcI | CTRYAG | 1 cut(s) | 198 |
| SinI | GGWCC | 1 cut(s) | 650 |
| SmlI | CTYRAG | 1 cut(s) | 302 |
| SmoI | CTYRAG | 1 cut(s) | 302 |
| Sse9I | AATT | 1 cut(s) | 353 |
| SspMI | CTAG | 4 cut(s) | 164, 176, 716, 799 |
| StyD4I | CCNGG | 4 cut(s) | 232, 296, 337, 399 |
| StyI | CCWWGG | 1 cut(s) | 492 |
| TaaI | ACNGT | 2 cut(s) | 510, 740 |
| TaiI | ACGT | 3 cut(s) | 70, 380, 412 |
| TaqI | TCGA | 1 cut(s) | 670 |
| TasI | AATT | 1 cut(s) | 353 |
| TauI | GCSGC | 4 cut(s) | 416, 419, 422, 636 |
| TfiI | GAWTC | 2 cut(s) | 30, 514 |
| Tru1I | TTAA | 2 cut(s) | 374, 438 |
| Tru9I | TTAA | 2 cut(s) | 374, 438 |
| TscAI | CASTG | 1 cut(s) | 743 |
| TseFI | GTSAC | 1 cut(s) | 228 |
| TseI | GCWGC | 2 cut(s) | 86, 262 |
| Tsp45I | GTSAC | 1 cut(s) | 228 |
| TspDTI | ATGAA | 1 cut(s) | 141 |
| TspGWI | ACGGA | 1 cut(s) | 317 |
| TspRI | CASTG | 1 cut(s) | 743 |
| VpaK11BI | GGWCC | 1 cut(s) | 650 |
| XapI | RAATTY | 1 cut(s) | 353 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 499 |
| XmnI | GAANNNNTTC | 1 cut(s) | 69 |
| XspI | CTAG | 4 cut(s) | 164, 176, 716, 799 |