Putative gypsy type transposon
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 313 |
| Acc36I | ACCTGC | 1 cut(s) | 313 |
| Acc65I | GGTACC | 1 cut(s) | 2072 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 159, 516, 1872 |
| AccBSI | CCGCTC | 5 cut(s) | 244, 1378, 1570, 1749, 1962 |
| AccIII | TCCGGA | 1 cut(s) | 38 |
| AclWI | GGATC | 7 cut(s) | 36, 49, 176, 379, 840, 915, 1657 |
| AcoI | YGGCCR | 7 cut(s) | 3, 1071, 1320, 1554, 1638, 1755, 1833 |
| AcsI | RAATTY | 1 cut(s) | 465 |
| AcuI | CTGAAG | 3 cut(s) | 1442, 1652, 2166 |
| AcyI | GRCGYC | 5 cut(s) | 888, 1105, 1139, 1539, 1863 |
| AfaI | GTAC | 4 cut(s) | 944, 1352, 1437, 2074 |
| AflIII | ACRYGT | 2 cut(s) | 513, 1614 |
| AgsI | TTSAA | 2 cut(s) | 281, 696 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 1152, 2088 |
| AjiI | CACGTC | 1 cut(s) | 1306 |
| AjnI | CCWGG | 7 cut(s) | 158, 621, 1332, 1479, 1575, 1830, 1903 |
| AleI | CACNNNNGTG | 1 cut(s) | 1184 |
| AluBI | AGCT | 3 cut(s) | 170, 673, 1552 |
| AluI | AGCT | 3 cut(s) | 170, 673, 1552 |
| Alw26I | GTCTC | 5 cut(s) | 851, 929, 980, 2037, 2075 |
| AlwI | GGATC | 7 cut(s) | 36, 49, 176, 379, 840, 915, 1657 |
| Ama87I | CYCGRG | 3 cut(s) | 1289, 1963, 2061 |
| Aor13HI | TCCGGA | 1 cut(s) | 38 |
| ApaI | GGGCCC | 1 cut(s) | 1258 |
| ApeKI | GCWGC | 5 cut(s) | 215, 263, 1624, 1852, 2134 |
| ApoI | RAATTY | 1 cut(s) | 465 |
| Asp718I | GGTACC | 1 cut(s) | 2072 |
| AsuC2I | CCSGG | 7 cut(s) | 208, 339, 867, 983, 1102, 2062, 2063 |
| AsuHPI | GGTGA | 8 cut(s) | 358, 430, 448, 988, 1385, 1385, 1727, 1888 |
| AsuNHI | GCTAGC | 1 cut(s) | 955 |
| AvaI | CYCGRG | 3 cut(s) | 1289, 1963, 2061 |
| AvaII | GGWCC | 5 cut(s) | 569, 1026, 1154, 1295, 1884 |
| AxyI | CCTNAGG | 2 cut(s) | 686, 949 |
| BaeGI | GKGCMC | 4 cut(s) | 1258, 1831, 1918, 1960 |
| BalI | TGGCCA | 1 cut(s) | 1835 |
| BamHI | GGATCC | 1 cut(s) | 41 |
| BanII | GRGCYC | 2 cut(s) | 1004, 1258 |
| BauI | CACGAG | 4 cut(s) | 102, 735, 846, 1324 |
| BbsI | GAAGAC | 1 cut(s) | 974 |
| BbvCI | CCTCAGC | 1 cut(s) | 1737 |
| BbvI | GCAGC | 5 cut(s) | 202, 275, 1611, 1864, 2146 |
| BccI | CCATC | 2 cut(s) | 1946, 2063 |
| BceAI | ACGGC | 4 cut(s) | 836, 867, 1541, 1748 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 1280, 1314, 1511, 1545 |
| BciT130I | CCWGG | 7 cut(s) | 160, 623, 1334, 1481, 1577, 1832, 1905 |
| BcnI | CCSGG | 7 cut(s) | 208, 339, 867, 983, 1102, 2062, 2063 |
| BcoDI | GTCTC | 5 cut(s) | 851, 929, 980, 2037, 2075 |
| BfaI | CTAG | 4 cut(s) | 131, 201, 956, 1149 |
| BfoI | RGCGCY | 8 cut(s) | 536, 622, 668, 998, 1070, 1108, 1142, 1866 |
| BfuAI | ACCTGC | 1 cut(s) | 313 |
| BglI | GCCNNNNNGGC | 3 cut(s) | 212, 1691, 1922 |
| BlpI | GCTNAGC | 1 cut(s) | 998 |
| Bme18I | GGWCC | 5 cut(s) | 569, 1026, 1154, 1295, 1884 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 1152, 2088 |
| BmeT110I | CYCGRG | 3 cut(s) | 1289, 1963, 2061 |
| BmgBI | CACGTC | 1 cut(s) | 1306 |
| BmrI | ACTGGG | 3 cut(s) | 1260, 1882, 2014 |
| BmsI | GCATC | 3 cut(s) | 771, 1225, 1519 |
| BmtI | GCTAGC | 1 cut(s) | 959 |
| BmuI | ACTGGG | 3 cut(s) | 1260, 1882, 2014 |
| BpiI | GAAGAC | 1 cut(s) | 974 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 365, 397 |
| BpmI | CTGGAG | 1 cut(s) | 1598 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1737 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 998 |
| BpuEI | CTTGAG | 1 cut(s) | 7 |
| BpuMI | CCSGG | 7 cut(s) | 208, 339, 867, 983, 1102, 2062, 2063 |
| BsaHI | GRCGYC | 5 cut(s) | 888, 1105, 1139, 1539, 1863 |
| BsaI | GGTCTC | 2 cut(s) | 929, 2075 |
| BsaWI | WCCGGW | 2 cut(s) | 38, 330 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 926, 956 |
| Bse118I | RCCGGY | 4 cut(s) | 1028, 1069, 1891, 1921 |
| Bse1I | ACTGG | 5 cut(s) | 609, 710, 1255, 1877, 2020 |
| Bse21I | CCTNAGG | 2 cut(s) | 686, 949 |
| BseAI | TCCGGA | 1 cut(s) | 38 |
| BseBI | CCWGG | 7 cut(s) | 160, 623, 1334, 1481, 1577, 1832, 1905 |
| BseGI | GGATG | 2 cut(s) | 2002, 2074 |
| BseNI | ACTGG | 5 cut(s) | 609, 710, 1255, 1877, 2020 |
| BseRI | GAGGAG | 2 cut(s) | 386, 1457 |
| BseSI | GKGCMC | 4 cut(s) | 1258, 1831, 1918, 1960 |
| BseX3I | CGGCCG | 1 cut(s) | 1755 |
| BseXI | GCAGC | 5 cut(s) | 202, 275, 1611, 1864, 2146 |
| BseYI | CCCAGC | 4 cut(s) | 816, 1022, 1108, 2004 |
| BsgI | GTGCAG | 2 cut(s) | 126, 282 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1758 |
| BsiEI | CGRYCG | 1 cut(s) | 1758 |
| BsiHKCI | CYCGRG | 3 cut(s) | 1289, 1963, 2061 |
| BsiWI | CGTACG | 1 cut(s) | 1350 |
| BslFI | GGGAC | 5 cut(s) | 176, 1039, 1478, 1603, 2076 |
| BsmAI | GTCTC | 5 cut(s) | 851, 929, 980, 2037, 2075 |
| BsmBI | CGTCTC | 1 cut(s) | 980 |
| BsmFI | GGGAC | 5 cut(s) | 176, 1039, 1478, 1603, 2076 |
| Bso31I | GGTCTC | 2 cut(s) | 929, 2075 |
| BsoBI | CYCGRG | 3 cut(s) | 1289, 1963, 2061 |
| Bsp120I | GGGCCC | 1 cut(s) | 1254 |
| Bsp1286I | GDGCHC | 5 cut(s) | 1004, 1258, 1831, 1918, 1960 |
| Bsp13I | TCCGGA | 1 cut(s) | 38 |
| Bsp143I | GATC | 8 cut(s) | 41, 181, 384, 675, 832, 907, 1630, 1662 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 998 |
| Bsp19I | CCATGG | 1 cut(s) | 903 |
| Bsp68I | TCGCGA | 2 cut(s) | 429, 896 |
| BspEI | TCCGGA | 1 cut(s) | 38 |
| BspMI | ACCTGC | 1 cut(s) | 313 |
| BspOI | GCTAGC | 1 cut(s) | 959 |
| BspPI | GGATC | 7 cut(s) | 36, 49, 176, 379, 840, 915, 1657 |
| BspQI | GCTCTTC | 1 cut(s) | 234 |
| BspTNI | GGTCTC | 2 cut(s) | 929, 2075 |
| BsrBI | CCGCTC | 5 cut(s) | 244, 1378, 1570, 1749, 1962 |
| BsrFI | RCCGGY | 4 cut(s) | 1028, 1069, 1891, 1921 |
| BsrI | ACTGG | 5 cut(s) | 609, 710, 1255, 1877, 2020 |
| BssAI | RCCGGY | 4 cut(s) | 1028, 1069, 1891, 1921 |
| BssMI | GATC | 8 cut(s) | 41, 181, 384, 675, 832, 907, 1630, 1662 |
| BssNI | GRCGYC | 5 cut(s) | 888, 1105, 1139, 1539, 1863 |
| BssSI | CACGAG | 4 cut(s) | 102, 735, 846, 1324 |
| BssT1I | CCWWGG | 3 cut(s) | 658, 903, 1644 |
| Bst2BI | CACGAG | 4 cut(s) | 102, 735, 846, 1324 |
| Bst2UI | CCWGG | 7 cut(s) | 160, 623, 1334, 1481, 1577, 1832, 1905 |
| Bst4CI | ACNGT | 7 cut(s) | 272, 367, 973, 1373, 1526, 1593, 1707 |
| Bst6I | CTCTTC | 3 cut(s) | 234, 738, 1221 |
| BstACI | GRCGYC | 5 cut(s) | 888, 1105, 1139, 1539, 1863 |
| BstDSI | CCRYGG | 6 cut(s) | 393, 903, 1543, 1752, 1764, 2101 |
| BstF5I | GGATG | 2 cut(s) | 2002, 2074 |
| BstH2I | RGCGCY | 8 cut(s) | 536, 622, 668, 998, 1070, 1108, 1142, 1866 |
| BstKTI | GATC | 8 cut(s) | 44, 184, 387, 678, 835, 910, 1633, 1665 |
| BstMAI | GTCTC | 5 cut(s) | 851, 929, 980, 2037, 2075 |
| BstMBI | GATC | 8 cut(s) | 41, 181, 384, 675, 832, 907, 1630, 1662 |
| BstMCI | CGRYCG | 1 cut(s) | 1758 |
| BstNI | CCWGG | 7 cut(s) | 160, 623, 1334, 1481, 1577, 1832, 1905 |
| BstNSI | RCATGY | 2 cut(s) | 517, 1618 |
| BstSLI | GKGCMC | 4 cut(s) | 1258, 1831, 1918, 1960 |
| BstV1I | GCAGC | 5 cut(s) | 202, 275, 1611, 1864, 2146 |
| BstV2I | GAAGAC | 1 cut(s) | 974 |
| BstX2I | RGATCY | 2 cut(s) | 41, 1662 |
| BstYI | RGATCY | 2 cut(s) | 41, 1662 |
| BstZI | CGGCCG | 1 cut(s) | 1755 |
| Bsu36I | CCTNAGG | 2 cut(s) | 686, 949 |
| BtgI | CCRYGG | 6 cut(s) | 393, 903, 1543, 1752, 1764, 2101 |
| BtrI | CACGTC | 1 cut(s) | 1306 |
| BtsCI | GGATG | 2 cut(s) | 2002, 2074 |
| BtsI | GCAGTG | 1 cut(s) | 116 |
| BtsIMutI | CAGTG | 2 cut(s) | 116, 1802 |
| BtuMI | TCGCGA | 2 cut(s) | 429, 896 |
| BveI | ACCTGC | 1 cut(s) | 313 |
| CciNI | GCGGCCGC | 1 cut(s) | 1755 |
| Cfr10I | RCCGGY | 4 cut(s) | 1028, 1069, 1891, 1921 |
| Cfr42I | CCGCGG | 3 cut(s) | 396, 1755, 2104 |
| Cfr9I | CCCGGG | 1 cut(s) | 2061 |
| CseI | GACGC | 7 cut(s) | 80, 176, 896, 997, 1515, 1547, 2150 |
| Csp6I | GTAC | 4 cut(s) | 943, 1351, 1436, 2073 |
| CviAII | CATG | 8 cut(s) | 179, 318, 514, 904, 940, 1615, 1888, 2036 |
| CviQI | GTAC | 4 cut(s) | 943, 1351, 1436, 2073 |
| DinI | GGCGCC | 3 cut(s) | 1106, 1140, 1864 |
| DpnI | GATC | 8 cut(s) | 43, 183, 386, 677, 834, 909, 1632, 1664 |
| DpnII | GATC | 8 cut(s) | 41, 181, 384, 675, 832, 907, 1630, 1662 |
| DriI | GACNNNNNGTC | 2 cut(s) | 1152, 2088 |
| EaeI | YGGCCR | 7 cut(s) | 3, 1071, 1320, 1554, 1638, 1755, 1833 |
| EagI | CGGCCG | 1 cut(s) | 1755 |
| Eam1104I | CTCTTC | 3 cut(s) | 234, 738, 1221 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 1152, 2088 |
| EarI | CTCTTC | 3 cut(s) | 234, 738, 1221 |
| EciI | GGCGGA | 5 cut(s) | 596, 793, 852, 1275, 2009 |
| EclXI | CGGCCG | 1 cut(s) | 1755 |
| Eco130I | CCWWGG | 3 cut(s) | 658, 903, 1644 |
| Eco147I | AGGCCT | 1 cut(s) | 1162 |
| Eco24I | GRGCYC | 2 cut(s) | 1004, 1258 |
| Eco31I | GGTCTC | 2 cut(s) | 929, 2075 |
| Eco47I | GGWCC | 5 cut(s) | 569, 1026, 1154, 1295, 1884 |
| Eco52I | CGGCCG | 1 cut(s) | 1755 |
| Eco57I | CTGAAG | 3 cut(s) | 1442, 1652, 2166 |
| Eco81I | CCTNAGG | 2 cut(s) | 686, 949 |
| Eco88I | CYCGRG | 3 cut(s) | 1289, 1963, 2061 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1254, 1295 |
| EcoRII | CCWGG | 7 cut(s) | 158, 621, 1332, 1479, 1575, 1830, 1903 |
| EcoT14I | CCWWGG | 3 cut(s) | 658, 903, 1644 |
| EcoT38I | GRGCYC | 2 cut(s) | 1004, 1258 |
| EgeI | GGCGCC | 3 cut(s) | 1106, 1140, 1864 |
| EheI | GGCGCC | 3 cut(s) | 1106, 1140, 1864 |
| ErhI | CCWWGG | 3 cut(s) | 658, 903, 1644 |
| Esp3I | CGTCTC | 1 cut(s) | 980 |
| FaeI | CATG | 8 cut(s) | 182, 321, 517, 907, 943, 1618, 1891, 2039 |
| FalI | AAGNNNNNCTT | 3 cut(s) | 1969, 2001, 2163 |
| FaqI | GGGAC | 5 cut(s) | 176, 1039, 1478, 1603, 2076 |
| FatI | CATG | 8 cut(s) | 178, 317, 513, 903, 939, 1614, 1887, 2035 |
| FauNDI | CATATG | 1 cut(s) | 231 |
| FokI | GGATG | 2 cut(s) | 2009, 2081 |
| FriOI | GRGCYC | 2 cut(s) | 1004, 1258 |
| FspBI | CTAG | 4 cut(s) | 131, 201, 956, 1149 |
| GsaI | CCCAGC | 4 cut(s) | 820, 1026, 1112, 2008 |
| GsuI | CTGGAG | 1 cut(s) | 1598 |
| HaeII | RGCGCY | 8 cut(s) | 536, 622, 668, 998, 1070, 1108, 1142, 1866 |
| HgaI | GACGC | 7 cut(s) | 80, 176, 896, 997, 1515, 1547, 2150 |
| Hin1I | GRCGYC | 5 cut(s) | 888, 1105, 1139, 1539, 1863 |
| Hin1II | CATG | 8 cut(s) | 182, 321, 517, 907, 943, 1618, 1891, 2039 |
| HphI | GGTGA | 8 cut(s) | 358, 430, 448, 988, 1385, 1385, 1727, 1888 |
| Hpy166II | GTNNAC | 3 cut(s) | 359, 643, 979 |
| Hpy188I | TCNGA | 7 cut(s) | 46, 767, 966, 1009, 1158, 1461, 2110 |
| Hpy188III | TCNNGA | 6 cut(s) | 39, 191, 428, 679, 737, 895 |
| Hpy8I | GTNNAC | 3 cut(s) | 359, 643, 979 |
| Hpy99I | CGWCG | 4 cut(s) | 367, 657, 1147, 1509 |
| HpyCH4III | ACNGT | 7 cut(s) | 272, 367, 973, 1373, 1526, 1593, 1707 |
| HpyCH4IV | ACGT | 5 cut(s) | 113, 165, 355, 1305, 1839 |
| HpyCH4V | TGCA | 7 cut(s) | 107, 235, 263, 412, 630, 1852, 2039 |
| HpySE526I | ACGT | 5 cut(s) | 113, 165, 355, 1305, 1839 |
| Hsp92I | GRCGYC | 5 cut(s) | 888, 1105, 1139, 1539, 1863 |
| Hsp92II | CATG | 8 cut(s) | 182, 321, 517, 907, 943, 1618, 1891, 2039 |
| KasI | GGCGCC | 3 cut(s) | 1104, 1138, 1862 |
| Kpn2I | TCCGGA | 1 cut(s) | 38 |
| KpnI | GGTACC | 1 cut(s) | 2076 |
| KroI | GCCGGC | 1 cut(s) | 1069 |
| KroNI | GCCGGC | 1 cut(s) | 1071 |
| KspI | CCGCGG | 3 cut(s) | 396, 1755, 2104 |
| Kzo9I | GATC | 8 cut(s) | 41, 181, 384, 675, 832, 907, 1630, 1662 |
| LguI | GCTCTTC | 1 cut(s) | 234 |
| LmnI | GCTCC | 6 cut(s) | 662, 1288, 1579, 1606, 1743, 1754 |
| Lsp1109I | GCAGC | 5 cut(s) | 202, 275, 1611, 1864, 2146 |
| LweI | GCATC | 3 cut(s) | 771, 1225, 1519 |
| MaeI | CTAG | 4 cut(s) | 131, 201, 956, 1149 |
| MaeII | ACGT | 5 cut(s) | 113, 165, 355, 1305, 1839 |
| MaeIII | GTNAC | 5 cut(s) | 114, 436, 884, 1120, 1306 |
| MalI | GATC | 8 cut(s) | 43, 183, 386, 677, 834, 909, 1632, 1664 |
| MbiI | CCGCTC | 5 cut(s) | 244, 1378, 1570, 1749, 1962 |
| MboI | GATC | 8 cut(s) | 41, 181, 384, 675, 832, 907, 1630, 1662 |
| MboII | GAAGA | 7 cut(s) | 251, 752, 755, 979, 1238, 1244, 2174 |
| MflI | RGATCY | 2 cut(s) | 41, 1662 |
| MhlI | GDGCHC | 5 cut(s) | 1004, 1258, 1831, 1918, 1960 |
| MlsI | TGGCCA | 1 cut(s) | 1835 |
| MluCI | AATT | 3 cut(s) | 350, 465, 925 |
| MluNI | TGGCCA | 1 cut(s) | 1835 |
| Mly113I | GGCGCC | 3 cut(s) | 1105, 1139, 1863 |
| MmeI | TCCRAC | 3 cut(s) | 1584, 1689, 2004 |
| Mox20I | TGGCCA | 1 cut(s) | 1835 |
| MroI | TCCGGA | 1 cut(s) | 38 |
| MroNI | GCCGGC | 1 cut(s) | 1069 |
| MscI | TGGCCA | 1 cut(s) | 1835 |
| MseI | TTAA | 1 cut(s) | 1701 |
| MslI | CAYNNNNRTG | 2 cut(s) | 597, 1184 |
| Msp20I | TGGCCA | 1 cut(s) | 1835 |
| MspA1I | CMGCKG | 7 cut(s) | 395, 448, 1112, 1672, 1754, 2008, 2103 |
| MvaI | CCWGG | 7 cut(s) | 160, 623, 1334, 1481, 1577, 1832, 1905 |
| NaeI | GCCGGC | 1 cut(s) | 1071 |
| NarI | GGCGCC | 3 cut(s) | 1105, 1139, 1863 |
| NciI | CCSGG | 7 cut(s) | 208, 339, 867, 983, 1102, 2062, 2063 |
| NcoI | CCATGG | 1 cut(s) | 903 |
| NdeI | CATATG | 1 cut(s) | 231 |
| NdeII | GATC | 8 cut(s) | 41, 181, 384, 675, 832, 907, 1630, 1662 |
| NgoMIV | GCCGGC | 1 cut(s) | 1069 |
| NheI | GCTAGC | 1 cut(s) | 955 |
| NlaIII | CATG | 8 cut(s) | 182, 321, 517, 907, 943, 1618, 1891, 2039 |
| NmeAIII | GCCGAG | 1 cut(s) | 1381 |
| NmuCI | GTSAC | 5 cut(s) | 114, 436, 884, 1120, 1306 |
| NotI | GCGGCCGC | 1 cut(s) | 1755 |
| NruI | TCGCGA | 2 cut(s) | 429, 896 |
| NspI | RCATGY | 2 cut(s) | 517, 1618 |
| OliI | CACNNNNGTG | 1 cut(s) | 1184 |
| PaqCI | CACCTGC | 1 cut(s) | 313 |
| PasI | CCCWGGG | 1 cut(s) | 159 |
| PceI | AGGCCT | 1 cut(s) | 1162 |
| PciI | ACATGT | 2 cut(s) | 513, 1614 |
| PciSI | GCTCTTC | 1 cut(s) | 234 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 92 |
| PdiI | GCCGGC | 1 cut(s) | 1071 |
| PfeI | GAWTC | 3 cut(s) | 35, 692, 781 |
| Pfl23II | CGTACG | 1 cut(s) | 1350 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 159, 516, 1872 |
| PluTI | GGCGCC | 3 cut(s) | 1108, 1142, 1866 |
| PpuMI | RGGWCCY | 1 cut(s) | 1295 |
| PscI | ACATGT | 2 cut(s) | 513, 1614 |
| Psp5II | RGGWCCY | 1 cut(s) | 1295 |
| Psp6I | CCWGG | 7 cut(s) | 158, 621, 1332, 1479, 1575, 1830, 1903 |
| PspFI | CCCAGC | 4 cut(s) | 816, 1022, 1108, 2004 |
| PspGI | CCWGG | 7 cut(s) | 158, 621, 1332, 1479, 1575, 1830, 1903 |
| PspLI | CGTACG | 1 cut(s) | 1350 |
| PspOMI | GGGCCC | 1 cut(s) | 1254 |
| PspPPI | RGGWCCY | 1 cut(s) | 1295 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1343, 1375 |
| PsuI | RGATCY | 2 cut(s) | 41, 1662 |
| RruI | TCGCGA | 2 cut(s) | 429, 896 |
| RsaI | GTAC | 4 cut(s) | 944, 1352, 1437, 2074 |
| RsaNI | GTAC | 4 cut(s) | 943, 1351, 1436, 2073 |
| RseI | CAYNNNNRTG | 2 cut(s) | 597, 1184 |
| SacII | CCGCGG | 3 cut(s) | 396, 1755, 2104 |
| SapI | GCTCTTC | 1 cut(s) | 234 |
| SaqAI | TTAA | 1 cut(s) | 1701 |
| Sau3AI | GATC | 8 cut(s) | 41, 181, 384, 675, 832, 907, 1630, 1662 |
| SduI | GDGCHC | 5 cut(s) | 1004, 1258, 1831, 1918, 1960 |
| SfaNI | GCATC | 3 cut(s) | 771, 1225, 1519 |
| SfoI | GGCGCC | 3 cut(s) | 1106, 1140, 1864 |
| Sfr303I | CCGCGG | 3 cut(s) | 396, 1755, 2104 |
| SgrBI | CCGCGG | 3 cut(s) | 396, 1755, 2104 |
| SinI | GGWCC | 5 cut(s) | 569, 1026, 1154, 1295, 1884 |
| SmaI | CCCGGG | 1 cut(s) | 2063 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 597, 1184 |
| SmlI | CTYRAG | 1 cut(s) | 22 |
| SmoI | CTYRAG | 1 cut(s) | 22 |
| Sse9I | AATT | 3 cut(s) | 350, 465, 925 |
| SseBI | AGGCCT | 1 cut(s) | 1162 |
| SspDI | GGCGCC | 3 cut(s) | 1104, 1138, 1862 |
| SspI | AATATT | 1 cut(s) | 75 |
| SspMI | CTAG | 4 cut(s) | 131, 201, 956, 1149 |
| StuI | AGGCCT | 1 cut(s) | 1162 |
| StyI | CCWWGG | 3 cut(s) | 658, 903, 1644 |
| TaaI | ACNGT | 7 cut(s) | 272, 367, 973, 1373, 1526, 1593, 1707 |
| TaiI | ACGT | 5 cut(s) | 116, 168, 358, 1308, 1842 |
| TaqI | TCGA | 3 cut(s) | 383, 678, 1500 |
| TaqII | GACCGA | 1 cut(s) | 1823 |
| TasI | AATT | 3 cut(s) | 350, 465, 925 |
| TfiI | GAWTC | 3 cut(s) | 35, 692, 781 |
| Tru1I | TTAA | 1 cut(s) | 1701 |
| Tru9I | TTAA | 1 cut(s) | 1701 |
| TscAI | CASTG | 2 cut(s) | 123, 1809 |
| TseFI | GTSAC | 5 cut(s) | 114, 436, 884, 1120, 1306 |
| TseI | GCWGC | 5 cut(s) | 215, 263, 1624, 1852, 2134 |
| Tsp45I | GTSAC | 5 cut(s) | 114, 436, 884, 1120, 1306 |
| TspDTI | ATGAA | 2 cut(s) | 615, 791 |
| TspGWI | ACGGA | 2 cut(s) | 84, 265 |
| TspMI | CCCGGG | 1 cut(s) | 2061 |
| TspRI | CASTG | 2 cut(s) | 123, 1809 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 159, 516, 1872 |
| VpaK11BI | GGWCC | 5 cut(s) | 569, 1026, 1154, 1295, 1884 |
| XapI | RAATTY | 1 cut(s) | 465 |
| XceI | RCATGY | 2 cut(s) | 517, 1618 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1330 |
| XmaI | CCCGGG | 1 cut(s) | 2061 |
| XspI | CTAG | 4 cut(s) | 131, 201, 956, 1149 |