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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 432 |
| AccBSI | CCGCTC | 1 cut(s) | 472 |
| AccII | CGCG | 2 cut(s) | 80, 435 |
| AclWI | GGATC | 1 cut(s) | 69 |
| AcoI | YGGCCR | 4 cut(s) | 51, 360, 402, 450 |
| AcyI | GRCGYC | 2 cut(s) | 296, 429 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 13, 84, 204, 316 |
| AgsI | TTSAA | 1 cut(s) | 140 |
| AleI | CACNNNNGTG | 1 cut(s) | 117 |
| AluBI | AGCT | 2 cut(s) | 325, 442 |
| AluI | AGCT | 2 cut(s) | 325, 442 |
| Alw26I | GTCTC | 2 cut(s) | 350, 370 |
| AlwI | GGATC | 1 cut(s) | 69 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 310, 400 |
| AoxI | GGCC | 5 cut(s) | 51, 86, 360, 402, 450 |
| ApeKI | GCWGC | 1 cut(s) | 304 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 236, 268 |
| AspLEI | GCGC | 3 cut(s) | 77, 220, 234 |
| AspS9I | GGNCC | 4 cut(s) | 42, 86, 122, 195 |
| AsuC2I | CCSGG | 1 cut(s) | 85 |
| AsuHPI | GGTGA | 1 cut(s) | 199 |
| AvaII | GGWCC | 3 cut(s) | 42, 122, 195 |
| BalI | TGGCCA | 2 cut(s) | 404, 452 |
| BbvCI | CCTCAGC | 1 cut(s) | 326 |
| BbvI | GCAGC | 1 cut(s) | 316 |
| BccI | CCATC | 2 cut(s) | 11, 461 |
| BceAI | ACGGC | 2 cut(s) | 66, 255 |
| BcnI | CCSGG | 1 cut(s) | 85 |
| BcoDI | GTCTC | 2 cut(s) | 350, 370 |
| BfoI | RGCGCY | 3 cut(s) | 78, 221, 235 |
| BisI | GCNGC | 5 cut(s) | 78, 201, 294, 305, 436 |
| BlsI | GCNGC | 5 cut(s) | 79, 202, 295, 306, 437 |
| Bme1390I | CCNGG | 1 cut(s) | 85 |
| Bme18I | GGWCC | 3 cut(s) | 42, 122, 195 |
| BmgT120I | GGNCC | 4 cut(s) | 42, 86, 122, 195 |
| BmiI | GGNNCC | 4 cut(s) | 43, 44, 174, 209 |
| BmrFI | CCNGG | 1 cut(s) | 85 |
| BmsI | GCATC | 1 cut(s) | 93 |
| BpmI | CTGGAG | 2 cut(s) | 242, 332 |
| Bpu10I | CCTNAGC | 1 cut(s) | 326 |
| BpuMI | CCSGG | 1 cut(s) | 85 |
| BsaHI | GRCGYC | 2 cut(s) | 296, 429 |
| BsaI | GGTCTC | 1 cut(s) | 350 |
| BsaJI | CCNNGG | 4 cut(s) | 7, 363, 405, 433 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 13, 84, 204, 316 |
| Bse118I | RCCGGY | 2 cut(s) | 53, 142 |
| Bse1I | ACTGG | 2 cut(s) | 179, 384 |
| BseDI | CCNNGG | 4 cut(s) | 7, 363, 405, 433 |
| BseGI | GGATG | 2 cut(s) | 22, 108 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 13, 84, 204, 316 |
| BseMII | CTCAG | 2 cut(s) | 140, 317 |
| BseNI | ACTGG | 2 cut(s) | 179, 384 |
| BseX3I | CGGCCG | 1 cut(s) | 51 |
| BseXI | GCAGC | 1 cut(s) | 316 |
| BseYI | CCCAGC | 1 cut(s) | 203 |
| BsgI | GTGCAG | 1 cut(s) | 53 |
| Bsh1236I | CGCG | 2 cut(s) | 80, 435 |
| Bsh1285I | CGRYCG | 2 cut(s) | 54, 84 |
| BshFI | GGCC | 5 cut(s) | 53, 88, 362, 404, 452 |
| BsiEI | CGRYCG | 2 cut(s) | 54, 84 |
| BsiSI | CCGG | 4 cut(s) | 54, 84, 143, 235 |
| BslFI | GGGAC | 1 cut(s) | 55 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 13, 84, 204, 316 |
| BsmAI | GTCTC | 2 cut(s) | 350, 370 |
| BsmFI | GGGAC | 1 cut(s) | 55 |
| BsnI | GGCC | 5 cut(s) | 53, 88, 362, 404, 452 |
| Bso31I | GGTCTC | 1 cut(s) | 350 |
| Bsp143I | GATC | 1 cut(s) | 61 |
| BspANI | GGCC | 5 cut(s) | 53, 88, 362, 404, 452 |
| BspCNI | CTCAG | 2 cut(s) | 139, 318 |
| BspFNI | CGCG | 2 cut(s) | 80, 435 |
| BspLI | GGNNCC | 4 cut(s) | 43, 44, 174, 209 |
| BspPI | GGATC | 1 cut(s) | 69 |
| BspTNI | GGTCTC | 1 cut(s) | 350 |
| BsrBI | CCGCTC | 1 cut(s) | 472 |
| BsrFI | RCCGGY | 2 cut(s) | 53, 142 |
| BsrI | ACTGG | 2 cut(s) | 179, 384 |
| BssAI | RCCGGY | 2 cut(s) | 53, 142 |
| BssECI | CCNNGG | 4 cut(s) | 7, 363, 405, 433 |
| BssMI | GATC | 1 cut(s) | 61 |
| BssNI | GRCGYC | 2 cut(s) | 296, 429 |
| BssT1I | CCWWGG | 2 cut(s) | 7, 405 |
| Bst4CI | ACNGT | 2 cut(s) | 31, 160 |
| BstACI | GRCGYC | 2 cut(s) | 296, 429 |
| BstC8I | GCNNGC | 5 cut(s) | 36, 55, 108, 402, 440 |
| BstDEI | CTNAG | 2 cut(s) | 126, 326 |
| BstDSI | CCRYGG | 1 cut(s) | 433 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 11, 314 |
| BstF5I | GGATG | 2 cut(s) | 22, 108 |
| BstFNI | CGCG | 2 cut(s) | 80, 435 |
| BstH2I | RGCGCY | 3 cut(s) | 78, 221, 235 |
| BstHHI | GCGC | 3 cut(s) | 77, 220, 234 |
| BstKTI | GATC | 1 cut(s) | 64 |
| BstMAI | GTCTC | 2 cut(s) | 350, 370 |
| BstMBI | GATC | 1 cut(s) | 61 |
| BstMCI | CGRYCG | 2 cut(s) | 54, 84 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 31, 248 |
| BstSCI | CCNGG | 1 cut(s) | 83 |
| BstUI | CGCG | 2 cut(s) | 80, 435 |
| BstV1I | GCAGC | 1 cut(s) | 316 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 119 |
| BstZI | CGGCCG | 1 cut(s) | 51 |
| BsuRI | GGCC | 5 cut(s) | 53, 88, 362, 404, 452 |
| BtgI | CCRYGG | 1 cut(s) | 433 |
| BtsCI | GGATG | 2 cut(s) | 22, 108 |
| BtsIMutI | CAGTG | 3 cut(s) | 36, 156, 186 |
| Cac8I | GCNNGC | 5 cut(s) | 36, 55, 108, 402, 440 |
| CaiI | CAGNNNCTG | 2 cut(s) | 310, 400 |
| CfoI | GCGC | 3 cut(s) | 77, 220, 234 |
| Cfr10I | RCCGGY | 2 cut(s) | 53, 142 |
| Cfr13I | GGNCC | 4 cut(s) | 42, 86, 122, 195 |
| Cfr42I | CCGCGG | 1 cut(s) | 436 |
| CseI | GACGC | 1 cut(s) | 285 |
| CviAII | CATG | 1 cut(s) | 278 |
| DdeI | CTNAG | 2 cut(s) | 126, 326 |
| DpnI | GATC | 1 cut(s) | 63 |
| DpnII | GATC | 1 cut(s) | 61 |
| EaeI | YGGCCR | 4 cut(s) | 51, 360, 402, 450 |
| EagI | CGGCCG | 1 cut(s) | 51 |
| EciI | GGCGGA | 3 cut(s) | 161, 398, 425 |
| EclXI | CGGCCG | 1 cut(s) | 51 |
| Eco130I | CCWWGG | 2 cut(s) | 7, 405 |
| Eco31I | GGTCTC | 1 cut(s) | 350 |
| Eco47I | GGWCC | 3 cut(s) | 42, 122, 195 |
| Eco52I | CGGCCG | 1 cut(s) | 51 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 11, 314 |
| EcoO109I | RGGNCCY | 1 cut(s) | 42 |
| EcoT14I | CCWWGG | 2 cut(s) | 7, 405 |
| ErhI | CCWWGG | 2 cut(s) | 7, 405 |
| FaeI | CATG | 1 cut(s) | 281 |
| FaiI | YATR | 3 cut(s) | 279, 284, 423 |
| FaqI | GGGAC | 1 cut(s) | 55 |
| FatI | CATG | 1 cut(s) | 277 |
| FauI | CCCGC | 2 cut(s) | 31, 50 |
| Fnu4HI | GCNGC | 5 cut(s) | 78, 201, 294, 305, 436 |
| FokI | GGATG | 2 cut(s) | 29, 115 |
| Fsp4HI | GCNGC | 5 cut(s) | 78, 201, 294, 305, 436 |
| GlaI | GCGC | 3 cut(s) | 76, 219, 233 |
| GluI | GCNGC | 5 cut(s) | 78, 201, 294, 305, 436 |
| GsaI | CCCAGC | 1 cut(s) | 207 |
| GsuI | CTGGAG | 2 cut(s) | 242, 332 |
| HaeII | RGCGCY | 3 cut(s) | 78, 221, 235 |
| HaeIII | GGCC | 5 cut(s) | 53, 88, 362, 404, 452 |
| HapII | CCGG | 4 cut(s) | 54, 84, 143, 235 |
| HgaI | GACGC | 1 cut(s) | 285 |
| HhaI | GCGC | 3 cut(s) | 77, 220, 234 |
| Hin1I | GRCGYC | 2 cut(s) | 296, 429 |
| Hin1II | CATG | 1 cut(s) | 281 |
| Hin6I | GCGC | 3 cut(s) | 75, 218, 232 |
| HinP1I | GCGC | 3 cut(s) | 75, 218, 232 |
| HinfI | GANTC | 1 cut(s) | 245 |
| HpaII | CCGG | 4 cut(s) | 54, 84, 143, 235 |
| HphI | GGTGA | 1 cut(s) | 199 |
| Hpy188I | TCNGA | 3 cut(s) | 66, 129, 341 |
| Hpy188III | TCNNGA | 1 cut(s) | 349 |
| Hpy99I | CGWCG | 1 cut(s) | 301 |
| HpyAV | CCTTC | 2 cut(s) | 88, 124 |
| HpyCH4III | ACNGT | 2 cut(s) | 31, 160 |
| HpyCH4IV | ACGT | 1 cut(s) | 429 |
| HpyCH4V | TGCA | 3 cut(s) | 34, 277, 425 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 31, 248 |
| HpyF3I | CTNAG | 2 cut(s) | 126, 326 |
| HpySE526I | ACGT | 1 cut(s) | 429 |
| Hsp92I | GRCGYC | 2 cut(s) | 296, 429 |
| Hsp92II | CATG | 1 cut(s) | 281 |
| HspAI | GCGC | 3 cut(s) | 75, 218, 232 |
| KflI | GGGWCCC | 1 cut(s) | 42 |
| KroI | GCCGGC | 1 cut(s) | 53 |
| KroNI | GCCGGC | 1 cut(s) | 55 |
| KspI | CCGCGG | 1 cut(s) | 436 |
| Kzo9I | GATC | 1 cut(s) | 61 |
| LmnI | GCTCC | 1 cut(s) | 469 |
| Lsp1109I | GCAGC | 1 cut(s) | 316 |
| LweI | GCATC | 1 cut(s) | 93 |
| MaeII | ACGT | 1 cut(s) | 429 |
| MaeIII | GTNAC | 5 cut(s) | 154, 160, 187, 416, 461 |
| MalI | GATC | 1 cut(s) | 63 |
| MbiI | CCGCTC | 1 cut(s) | 472 |
| MboI | GATC | 1 cut(s) | 61 |
| MboII | GAAGA | 2 cut(s) | 161, 344 |
| MlsI | TGGCCA | 2 cut(s) | 404, 452 |
| MluNI | TGGCCA | 2 cut(s) | 404, 452 |
| MlyI | GAGTC | 1 cut(s) | 239 |
| Mox20I | TGGCCA | 2 cut(s) | 404, 452 |
| MroNI | GCCGGC | 1 cut(s) | 53 |
| MscI | TGGCCA | 2 cut(s) | 404, 452 |
| MslI | CAYNNNNRTG | 1 cut(s) | 117 |
| Msp20I | TGGCCA | 2 cut(s) | 404, 452 |
| MspA1I | CMGCKG | 2 cut(s) | 203, 435 |
| MspI | CCGG | 4 cut(s) | 54, 84, 143, 235 |
| MspR9I | CCNGG | 1 cut(s) | 85 |
| MvnI | CGCG | 2 cut(s) | 80, 435 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 31, 248 |
| NaeI | GCCGGC | 1 cut(s) | 55 |
| NciI | CCSGG | 1 cut(s) | 85 |
| NdeII | GATC | 1 cut(s) | 61 |
| NgoMIV | GCCGGC | 1 cut(s) | 53 |
| NlaIII | CATG | 1 cut(s) | 281 |
| NlaIV | GGNNCC | 4 cut(s) | 43, 44, 174, 209 |
| NmeAIII | GCCGAG | 2 cut(s) | 227, 388 |
| NmuCI | GTSAC | 5 cut(s) | 154, 160, 187, 416, 461 |
| OliI | CACNNNNGTG | 1 cut(s) | 117 |
| PdiI | GCCGGC | 1 cut(s) | 55 |
| PkrI | GCNGC | 5 cut(s) | 79, 202, 295, 306, 437 |
| PleI | GAGTC | 1 cut(s) | 239 |
| PpsI | GAGTC | 1 cut(s) | 239 |
| PpuMI | RGGWCCY | 1 cut(s) | 42 |
| Psp5II | RGGWCCY | 1 cut(s) | 42 |
| PspFI | CCCAGC | 1 cut(s) | 203 |
| PspN4I | GGNNCC | 4 cut(s) | 43, 44, 174, 209 |
| PspPI | GGNCC | 4 cut(s) | 42, 86, 122, 195 |
| PspPPI | RGGWCCY | 1 cut(s) | 42 |
| PstNI | CAGNNNCTG | 2 cut(s) | 310, 400 |
| RseI | CAYNNNNRTG | 1 cut(s) | 117 |
| SacII | CCGCGG | 1 cut(s) | 436 |
| SatI | GCNGC | 5 cut(s) | 78, 201, 294, 305, 436 |
| Sau3AI | GATC | 1 cut(s) | 61 |
| Sau96I | GGNCC | 4 cut(s) | 42, 86, 122, 195 |
| SchI | GAGTC | 1 cut(s) | 239 |
| ScrFI | CCNGG | 1 cut(s) | 85 |
| SetI | ASST | 7 cut(s) | 9, 135, 327, 346, 390, 432, 444 |
| SfaNI | GCATC | 1 cut(s) | 93 |
| Sfr303I | CCGCGG | 1 cut(s) | 436 |
| SgrBI | CCGCGG | 1 cut(s) | 436 |
| SinI | GGWCC | 3 cut(s) | 42, 122, 195 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 117 |
| StyD4I | CCNGG | 1 cut(s) | 83 |
| StyI | CCWWGG | 2 cut(s) | 7, 405 |
| TaaI | ACNGT | 2 cut(s) | 31, 160 |
| TaiI | ACGT | 1 cut(s) | 432 |
| TaqI | TCGA | 2 cut(s) | 299, 390 |
| TauI | GCSGC | 4 cut(s) | 80, 203, 296, 438 |
| TscAI | CASTG | 3 cut(s) | 36, 163, 186 |
| TseFI | GTSAC | 5 cut(s) | 154, 160, 187, 416, 461 |
| TseI | GCWGC | 1 cut(s) | 304 |
| Tsp45I | GTSAC | 5 cut(s) | 154, 160, 187, 416, 461 |
| TspRI | CASTG | 3 cut(s) | 36, 163, 186 |
| VpaK11BI | GGWCC | 3 cut(s) | 42, 122, 195 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 11, 314 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 96 |
| ZraI | GACGTC | 1 cut(s) | 430 |