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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AbsI | CCTCGAGG | 1 cut(s) | 171 |
| Acc16I | TGCGCA | 1 cut(s) | 221 |
| AccB1I | GGYRCC | 2 cut(s) | 190, 258 |
| AccBSI | CCGCTC | 1 cut(s) | 483 |
| AciI | CCGC | 8 cut(s) | 86, 103, 148, 185, 262, 483, 553, 596 |
| AclWI | GGATC | 1 cut(s) | 304 |
| AcuI | CTGAAG | 1 cut(s) | 634 |
| AfaI | GTAC | 1 cut(s) | 50 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 473, 474, 585, 645 |
| AgsI | TTSAA | 1 cut(s) | 540 |
| AjiI | CACGTC | 1 cut(s) | 97 |
| AjnI | CCWGG | 1 cut(s) | 452 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 307, 339 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 313, 345 |
| AluBI | AGCT | 8 cut(s) | 217, 348, 438, 447, 489, 532, 612, 659 |
| AluI | AGCT | 8 cut(s) | 217, 348, 438, 447, 489, 532, 612, 659 |
| Alw26I | GTCTC | 2 cut(s) | 151, 514 |
| AlwI | GGATC | 1 cut(s) | 304 |
| Ama87I | CYCGRG | 3 cut(s) | 171, 473, 511 |
| AoxI | GGCC | 3 cut(s) | 100, 175, 206 |
| ApeKI | GCWGC | 9 cut(s) | 31, 55, 217, 222, 345, 438, 457, 486, 673 |
| AspLEI | GCGC | 2 cut(s) | 84, 222 |
| AspS9I | GGNCC | 2 cut(s) | 100, 371 |
| AsuC2I | CCSGG | 1 cut(s) | 639 |
| AsuHPI | GGTGA | 1 cut(s) | 392 |
| AvaI | CYCGRG | 3 cut(s) | 171, 473, 511 |
| AvaII | GGWCC | 1 cut(s) | 371 |
| BanI | GGYRCC | 2 cut(s) | 190, 258 |
| BauI | CACGAG | 1 cut(s) | 442 |
| BbvI | GCAGC | 9 cut(s) | 18, 42, 204, 234, 357, 425, 469, 498, 660 |
| BccI | CCATC | 2 cut(s) | 361, 486 |
| BceAI | ACGGC | 1 cut(s) | 401 |
| BciT130I | CCWGG | 1 cut(s) | 454 |
| BcnI | CCSGG | 1 cut(s) | 639 |
| BcoDI | GTCTC | 2 cut(s) | 151, 514 |
| BfoI | RGCGCY | 1 cut(s) | 85 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 199 |
| Bme1390I | CCNGG | 2 cut(s) | 454, 639 |
| Bme18I | GGWCC | 1 cut(s) | 371 |
| BmeT110I | CYCGRG | 3 cut(s) | 171, 473, 511 |
| BmgBI | CACGTC | 1 cut(s) | 97 |
| BmgT120I | GGNCC | 2 cut(s) | 100, 371 |
| BmiI | GGNNCC | 4 cut(s) | 134, 192, 260, 372 |
| BmrFI | CCNGG | 2 cut(s) | 454, 639 |
| BmsI | GCATC | 2 cut(s) | 432, 469 |
| Bpu10I | CCTNAGC | 1 cut(s) | 557 |
| BpuEI | CTTGAG | 1 cut(s) | 664 |
| BpuMI | CCSGG | 1 cut(s) | 639 |
| BsaI | GGTCTC | 1 cut(s) | 514 |
| BsaJI | CCNNGG | 2 cut(s) | 472, 677 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 313, 343 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 473, 474, 585, 645 |
| Bse118I | RCCGGY | 1 cut(s) | 34 |
| Bse1I | ACTGG | 1 cut(s) | 18 |
| Bse3DI | GCAATG | 1 cut(s) | 143 |
| BseBI | CCWGG | 1 cut(s) | 454 |
| BseDI | CCNNGG | 2 cut(s) | 472, 677 |
| BseGI | GGATG | 1 cut(s) | 372 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 473, 474, 585, 645 |
| BseMI | GCAATG | 1 cut(s) | 143 |
| BseNI | ACTGG | 1 cut(s) | 18 |
| BseRI | GAGGAG | 2 cut(s) | 88, 511 |
| BseXI | GCAGC | 9 cut(s) | 18, 42, 204, 234, 357, 425, 469, 498, 660 |
| BseYI | CCCAGC | 1 cut(s) | 250 |
| BsgI | GTGCAG | 1 cut(s) | 424 |
| BshFI | GGCC | 3 cut(s) | 102, 177, 208 |
| BshNI | GGYRCC | 2 cut(s) | 190, 258 |
| BsiHKCI | CYCGRG | 3 cut(s) | 171, 473, 511 |
| BsiSI | CCGG | 2 cut(s) | 35, 639 |
| BslFI | GGGAC | 1 cut(s) | 384 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 473, 474, 585, 645 |
| BsmAI | GTCTC | 2 cut(s) | 151, 514 |
| BsmFI | GGGAC | 1 cut(s) | 384 |
| BsnI | GGCC | 3 cut(s) | 102, 177, 208 |
| Bso31I | GGTCTC | 1 cut(s) | 514 |
| BsoBI | CYCGRG | 3 cut(s) | 171, 473, 511 |
| Bsp143I | GATC | 2 cut(s) | 21, 309 |
| BspACI | CCGC | 8 cut(s) | 86, 103, 148, 185, 262, 483, 553, 596 |
| BspANI | GGCC | 3 cut(s) | 102, 177, 208 |
| BspLI | GGNNCC | 4 cut(s) | 134, 192, 260, 372 |
| BspPI | GGATC | 1 cut(s) | 304 |
| BspT107I | GGYRCC | 2 cut(s) | 190, 258 |
| BspTNI | GGTCTC | 1 cut(s) | 514 |
| BsrBI | CCGCTC | 1 cut(s) | 483 |
| BsrDI | GCAATG | 1 cut(s) | 143 |
| BsrFI | RCCGGY | 1 cut(s) | 34 |
| BsrI | ACTGG | 1 cut(s) | 18 |
| BssAI | RCCGGY | 1 cut(s) | 34 |
| BssECI | CCNNGG | 2 cut(s) | 472, 677 |
| BssMI | GATC | 2 cut(s) | 21, 309 |
| BssSI | CACGAG | 1 cut(s) | 442 |
| BssT1I | CCWWGG | 1 cut(s) | 677 |
| Bst2BI | CACGAG | 1 cut(s) | 442 |
| Bst2UI | CCWGG | 1 cut(s) | 454 |
| Bst4CI | ACNGT | 4 cut(s) | 234, 375, 404, 606 |
| BstC8I | GCNNGC | 3 cut(s) | 86, 215, 361 |
| BstDEI | CTNAG | 1 cut(s) | 557 |
| BstEII | GGTNACC | 1 cut(s) | 165 |
| BstF5I | GGATG | 1 cut(s) | 372 |
| BstH2I | RGCGCY | 1 cut(s) | 85 |
| BstHHI | GCGC | 2 cut(s) | 84, 222 |
| BstKTI | GATC | 2 cut(s) | 24, 312 |
| BstMAI | GTCTC | 2 cut(s) | 151, 514 |
| BstMBI | GATC | 2 cut(s) | 21, 309 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 190, 199, 214, 219, 444 |
| BstNI | CCWGG | 1 cut(s) | 454 |
| BstPI | GGTNACC | 1 cut(s) | 165 |
| BstSCI | CCNGG | 2 cut(s) | 452, 637 |
| BstV1I | GCAGC | 9 cut(s) | 18, 42, 204, 234, 357, 425, 469, 498, 660 |
| BsuRI | GGCC | 3 cut(s) | 102, 177, 208 |
| BtrI | CACGTC | 1 cut(s) | 97 |
| BtsCI | GGATG | 1 cut(s) | 372 |
| Cac8I | GCNNGC | 3 cut(s) | 86, 215, 361 |
| CfoI | GCGC | 2 cut(s) | 84, 222 |
| Cfr10I | RCCGGY | 1 cut(s) | 34 |
| Cfr13I | GGNCC | 2 cut(s) | 100, 371 |
| Csp6I | GTAC | 1 cut(s) | 49 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 78, 113, 587, 622 |
| CviQI | GTAC | 1 cut(s) | 49 |
| DdeI | CTNAG | 1 cut(s) | 557 |
| DpnI | GATC | 2 cut(s) | 23, 311 |
| DpnII | GATC | 2 cut(s) | 21, 309 |
| Eco130I | CCWWGG | 1 cut(s) | 677 |
| Eco147I | AGGCCT | 1 cut(s) | 177 |
| Eco31I | GGTCTC | 1 cut(s) | 514 |
| Eco32I | GATATC | 1 cut(s) | 576 |
| Eco47I | GGWCC | 1 cut(s) | 371 |
| Eco57I | CTGAAG | 1 cut(s) | 634 |
| Eco88I | CYCGRG | 3 cut(s) | 171, 473, 511 |
| Eco91I | GGTNACC | 1 cut(s) | 165 |
| EcoO65I | GGTNACC | 1 cut(s) | 165 |
| EcoRII | CCWGG | 1 cut(s) | 452 |
| EcoRV | GATATC | 1 cut(s) | 576 |
| EcoT14I | CCWWGG | 1 cut(s) | 677 |
| ErhI | CCWWGG | 1 cut(s) | 677 |
| FaiI | YATR | 3 cut(s) | 293, 341, 529 |
| FaqI | GGGAC | 1 cut(s) | 384 |
| FauI | CCCGC | 1 cut(s) | 93 |
| FokI | GGATG | 1 cut(s) | 379 |
| FspI | TGCGCA | 1 cut(s) | 221 |
| GlaI | GCGC | 2 cut(s) | 83, 221 |
| GsaI | CCCAGC | 1 cut(s) | 254 |
| HaeII | RGCGCY | 1 cut(s) | 85 |
| HaeIII | GGCC | 3 cut(s) | 102, 177, 208 |
| HapII | CCGG | 2 cut(s) | 35, 639 |
| HhaI | GCGC | 2 cut(s) | 84, 222 |
| Hin6I | GCGC | 2 cut(s) | 82, 220 |
| HinP1I | GCGC | 2 cut(s) | 82, 220 |
| HinfI | GANTC | 2 cut(s) | 277, 589 |
| HpaII | CCGG | 2 cut(s) | 35, 639 |
| HphI | GGTGA | 1 cut(s) | 392 |
| Hpy188III | TCNNGA | 4 cut(s) | 4, 303, 511, 513 |
| Hpy99I | CGWCG | 2 cut(s) | 98, 387 |
| HpyAV | CCTTC | 4 cut(s) | 198, 510, 534, 561 |
| HpyCH4III | ACNGT | 4 cut(s) | 234, 375, 404, 606 |
| HpyCH4IV | ACGT | 1 cut(s) | 96 |
| HpyCH4V | TGCA | 3 cut(s) | 295, 441, 582 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 190, 199, 214, 219, 444 |
| HpyF3I | CTNAG | 1 cut(s) | 557 |
| HpySE526I | ACGT | 1 cut(s) | 96 |
| HspAI | GCGC | 2 cut(s) | 82, 220 |
| Kzo9I | GATC | 2 cut(s) | 21, 309 |
| LmnI | GCTCC | 2 cut(s) | 543, 609 |
| Lsp1109I | GCAGC | 9 cut(s) | 18, 42, 204, 234, 357, 425, 469, 498, 660 |
| LweI | GCATC | 2 cut(s) | 432, 469 |
| MaeII | ACGT | 1 cut(s) | 96 |
| MaeIII | GTNAC | 3 cut(s) | 138, 165, 398 |
| MalI | GATC | 2 cut(s) | 23, 311 |
| MbiI | CCGCTC | 1 cut(s) | 483 |
| MboI | GATC | 2 cut(s) | 21, 309 |
| MboII | GAAGA | 2 cut(s) | 78, 627 |
| MluCI | AATT | 1 cut(s) | 520 |
| MlyI | GAGTC | 2 cut(s) | 271, 598 |
| MmeI | TCCRAC | 2 cut(s) | 134, 602 |
| MseI | TTAA | 2 cut(s) | 434, 503 |
| MslI | CAYNNNNRTG | 2 cut(s) | 148, 338 |
| MspA1I | CMGCKG | 2 cut(s) | 187, 489 |
| MspI | CCGG | 2 cut(s) | 35, 639 |
| MspR9I | CCNGG | 2 cut(s) | 454, 639 |
| MvaI | CCWGG | 1 cut(s) | 454 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 190, 199, 214, 219, 444 |
| NciI | CCSGG | 1 cut(s) | 639 |
| NdeII | GATC | 2 cut(s) | 21, 309 |
| NlaIV | GGNNCC | 4 cut(s) | 134, 192, 260, 372 |
| NmuCI | GTSAC | 1 cut(s) | 398 |
| NsbI | TGCGCA | 1 cut(s) | 221 |
| PaeR7I | CTCGAG | 2 cut(s) | 171, 511 |
| PceI | AGGCCT | 1 cut(s) | 177 |
| PleI | GAGTC | 2 cut(s) | 271, 597 |
| PpsI | GAGTC | 2 cut(s) | 271, 597 |
| Psp6I | CCWGG | 1 cut(s) | 452 |
| PspEI | GGTNACC | 1 cut(s) | 165 |
| PspFI | CCCAGC | 1 cut(s) | 250 |
| PspGI | CCWGG | 1 cut(s) | 452 |
| PspN4I | GGNNCC | 4 cut(s) | 134, 192, 260, 372 |
| PspPI | GGNCC | 2 cut(s) | 100, 371 |
| PspXI | VCTCGAGB | 1 cut(s) | 171 |
| PvuII | CAGCTG | 1 cut(s) | 489 |
| RsaI | GTAC | 1 cut(s) | 50 |
| RsaNI | GTAC | 1 cut(s) | 49 |
| RseI | CAYNNNNRTG | 2 cut(s) | 148, 338 |
| SaqAI | TTAA | 2 cut(s) | 434, 503 |
| Sau3AI | GATC | 2 cut(s) | 21, 309 |
| Sau96I | GGNCC | 2 cut(s) | 100, 371 |
| SchI | GAGTC | 2 cut(s) | 271, 598 |
| ScrFI | CCNGG | 2 cut(s) | 454, 639 |
| SfaNI | GCATC | 2 cut(s) | 432, 469 |
| Sfr274I | CTCGAG | 2 cut(s) | 171, 511 |
| SinI | GGWCC | 1 cut(s) | 371 |
| SlaI | CTCGAG | 2 cut(s) | 171, 511 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 148, 338 |
| SmlI | CTYRAG | 3 cut(s) | 171, 511, 643 |
| SmoI | CTYRAG | 3 cut(s) | 171, 511, 643 |
| Sse9I | AATT | 1 cut(s) | 520 |
| SseBI | AGGCCT | 1 cut(s) | 177 |
| SsiI | CCGC | 8 cut(s) | 86, 103, 148, 185, 262, 483, 553, 596 |
| StuI | AGGCCT | 1 cut(s) | 177 |
| StyD4I | CCNGG | 2 cut(s) | 452, 637 |
| StyI | CCWWGG | 1 cut(s) | 677 |
| TaaI | ACNGT | 4 cut(s) | 234, 375, 404, 606 |
| TaiI | ACGT | 1 cut(s) | 99 |
| TaqI | TCGA | 3 cut(s) | 172, 382, 512 |
| TasI | AATT | 1 cut(s) | 520 |
| TauI | GCSGC | 6 cut(s) | 105, 187, 264, 486, 556, 598 |
| Tru1I | TTAA | 2 cut(s) | 434, 503 |
| Tru9I | TTAA | 2 cut(s) | 434, 503 |
| TseFI | GTSAC | 1 cut(s) | 398 |
| TseI | GCWGC | 9 cut(s) | 31, 55, 217, 222, 345, 438, 457, 486, 673 |
| Tsp45I | GTSAC | 1 cut(s) | 398 |
| TspGWI | ACGGA | 1 cut(s) | 420 |
| VpaK11BI | GGWCC | 1 cut(s) | 371 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 150 |
| XhoI | CTCGAG | 2 cut(s) | 171, 511 |