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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 611 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 621 |
| AccBSI | CCGCTC | 3 cut(s) | 12, 39, 331 |
| AccII | CGCG | 1 cut(s) | 498 |
| AcoI | YGGCCR | 4 cut(s) | 303, 504, 582, 903 |
| AcuI | CTGAAG | 1 cut(s) | 85 |
| AcyI | GRCGYC | 1 cut(s) | 155 |
| AfaI | GTAC | 3 cut(s) | 76, 524, 682 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 211, 234, 375, 376, 502, 621, 706, 787, 823 |
| AflIII | ACRYGT | 1 cut(s) | 363 |
| AgsI | TTSAA | 3 cut(s) | 51, 410, 713 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 849 |
| AjiI | CACGTC | 1 cut(s) | 121 |
| AjnI | CCWGG | 4 cut(s) | 57, 147, 700, 807 |
| AleI | CACNNNNGTG | 1 cut(s) | 824 |
| AluBI | AGCT | 4 cut(s) | 178, 184, 301, 665 |
| AluI | AGCT | 4 cut(s) | 178, 184, 301, 665 |
| Alw21I | GWGCWC | 1 cut(s) | 186 |
| Alw26I | GTCTC | 2 cut(s) | 798, 836 |
| Ama87I | CYCGRG | 2 cut(s) | 822, 861 |
| ApeKI | GCWGC | 4 cut(s) | 373, 563, 598, 601 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 414 |
| AspLEI | GCGC | 1 cut(s) | 500 |
| AspS9I | GGNCC | 4 cut(s) | 131, 226, 814, 867 |
| AsuC2I | CCSGG | 3 cut(s) | 752, 823, 824 |
| AsuHPI | GGTGA | 3 cut(s) | 19, 19, 460 |
| AvaI | CYCGRG | 2 cut(s) | 822, 861 |
| AvaII | GGWCC | 1 cut(s) | 867 |
| BaeGI | GKGCMC | 1 cut(s) | 120 |
| BalI | TGGCCA | 1 cut(s) | 584 |
| BanI | GGYRCC | 1 cut(s) | 611 |
| BanII | GRGCYC | 1 cut(s) | 186 |
| BauI | CACGAG | 1 cut(s) | 291 |
| Bbv12I | GWGCWC | 1 cut(s) | 186 |
| BbvI | GCAGC | 4 cut(s) | 360, 575, 585, 613 |
| BccI | CCATC | 2 cut(s) | 623, 824 |
| BceAI | ACGGC | 7 cut(s) | 68, 110, 123, 290, 491, 519, 785 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 326, 360, 615, 649 |
| BciT130I | CCWGG | 4 cut(s) | 59, 149, 702, 809 |
| BcnI | CCSGG | 3 cut(s) | 752, 823, 824 |
| BcoDI | GTCTC | 2 cut(s) | 798, 836 |
| BfaI | CTAG | 1 cut(s) | 849 |
| BfmI | CTRYAG | 2 cut(s) | 206, 599 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 440 |
| BmcAI | AGTACT | 1 cut(s) | 682 |
| Bme1390I | CCNGG | 7 cut(s) | 59, 149, 702, 752, 809, 823, 824 |
| Bme18I | GGWCC | 1 cut(s) | 867 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 849 |
| BmeT110I | CYCGRG | 2 cut(s) | 822, 861 |
| BmgBI | CACGTC | 1 cut(s) | 121 |
| BmgT120I | GGNCC | 4 cut(s) | 131, 226, 814, 867 |
| BmiI | GGNNCC | 3 cut(s) | 494, 613, 868 |
| BmrFI | CCNGG | 7 cut(s) | 59, 149, 702, 752, 809, 823, 824 |
| BmrI | ACTGGG | 2 cut(s) | 631, 775 |
| BmsI | GCATC | 3 cut(s) | 268, 627, 641 |
| BmuI | ACTGGG | 2 cut(s) | 631, 775 |
| BpmI | CTGGAG | 2 cut(s) | 80, 200 |
| Bpu10I | CCTNAGC | 1 cut(s) | 185 |
| BpuMI | CCSGG | 3 cut(s) | 752, 823, 824 |
| Bsa29I | ATCGAT | 1 cut(s) | 635 |
| BsaHI | GRCGYC | 1 cut(s) | 155 |
| BsaI | GGTCTC | 1 cut(s) | 836 |
| BsaJI | CCNNGG | 8 cut(s) | 393, 444, 486, 579, 700, 786, 822, 862 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 7, 37 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 211, 234, 375, 376, 502, 621, 706, 787, 823 |
| Bse118I | RCCGGY | 1 cut(s) | 640 |
| Bse1I | ACTGG | 3 cut(s) | 573, 626, 781 |
| Bse3DI | GCAATG | 1 cut(s) | 558 |
| BseBI | CCWGG | 4 cut(s) | 59, 149, 702, 809 |
| BseCI | ATCGAT | 1 cut(s) | 635 |
| BseDI | CCNNGG | 8 cut(s) | 393, 444, 486, 579, 700, 786, 822, 862 |
| BseGI | GGATG | 1 cut(s) | 835 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 211, 234, 375, 376, 502, 621, 706, 787, 823 |
| BseMI | GCAATG | 1 cut(s) | 558 |
| BseMII | CTCAG | 3 cut(s) | 199, 470, 779 |
| BseNI | ACTGG | 3 cut(s) | 573, 626, 781 |
| BseRI | GAGGAG | 1 cut(s) | 206 |
| BseSI | GKGCMC | 1 cut(s) | 120 |
| BseX3I | CGGCCG | 2 cut(s) | 504, 903 |
| BseXI | GCAGC | 4 cut(s) | 360, 575, 585, 613 |
| Bsh1236I | CGCG | 1 cut(s) | 498 |
| Bsh1285I | CGRYCG | 3 cut(s) | 390, 507, 906 |
| BshNI | GGYRCC | 1 cut(s) | 611 |
| BshVI | ATCGAT | 1 cut(s) | 635 |
| BsiEI | CGRYCG | 3 cut(s) | 390, 507, 906 |
| BsiHKAI | GWGCWC | 1 cut(s) | 186 |
| BsiHKCI | CYCGRG | 2 cut(s) | 822, 861 |
| BsiSI | CCGG | 4 cut(s) | 320, 641, 752, 823 |
| BslFI | GGGAC | 3 cut(s) | 227, 352, 837 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 211, 234, 375, 376, 502, 621, 706, 787, 823 |
| BsmAI | GTCTC | 2 cut(s) | 798, 836 |
| BsmFI | GGGAC | 3 cut(s) | 227, 352, 837 |
| Bso31I | GGTCTC | 1 cut(s) | 836 |
| BsoBI | CYCGRG | 2 cut(s) | 822, 861 |
| Bsp1286I | GDGCHC | 2 cut(s) | 120, 186 |
| Bsp19I | CCATGG | 1 cut(s) | 579 |
| BspCNI | CTCAG | 3 cut(s) | 198, 471, 778 |
| BspDI | ATCGAT | 1 cut(s) | 635 |
| BspFNI | CGCG | 1 cut(s) | 498 |
| BspLI | GGNNCC | 3 cut(s) | 494, 613, 868 |
| BspMAI | CTGCAG | 1 cut(s) | 603 |
| BspT107I | GGYRCC | 1 cut(s) | 611 |
| BspTNI | GGTCTC | 1 cut(s) | 836 |
| BsrBI | CCGCTC | 3 cut(s) | 12, 39, 331 |
| BsrDI | GCAATG | 1 cut(s) | 558 |
| BsrFI | RCCGGY | 1 cut(s) | 640 |
| BsrI | ACTGG | 3 cut(s) | 573, 626, 781 |
| BssAI | RCCGGY | 1 cut(s) | 640 |
| BssECI | CCNNGG | 8 cut(s) | 393, 444, 486, 579, 700, 786, 822, 862 |
| BssNI | GRCGYC | 1 cut(s) | 155 |
| BssSI | CACGAG | 1 cut(s) | 291 |
| BssT1I | CCWWGG | 3 cut(s) | 393, 444, 579 |
| Bst2BI | CACGAG | 1 cut(s) | 291 |
| Bst2UI | CCWGG | 4 cut(s) | 59, 149, 702, 809 |
| Bst4CI | ACNGT | 4 cut(s) | 7, 275, 342, 456 |
| BstACI | GRCGYC | 1 cut(s) | 155 |
| BstC8I | GCNNGC | 9 cut(s) | 37, 202, 299, 303, 475, 654, 721, 814, 900 |
| BstDEI | CTNAG | 3 cut(s) | 185, 479, 765 |
| BstDSI | CCRYGG | 1 cut(s) | 579 |
| BstF5I | GGATG | 1 cut(s) | 835 |
| BstFNI | CGCG | 1 cut(s) | 498 |
| BstHHI | GCGC | 1 cut(s) | 500 |
| BstMAI | GTCTC | 2 cut(s) | 798, 836 |
| BstMCI | CGRYCG | 3 cut(s) | 390, 507, 906 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 287, 440, 569, 646, 662, 911 |
| BstNI | CCWGG | 4 cut(s) | 59, 149, 702, 809 |
| BstNSI | RCATGY | 1 cut(s) | 367 |
| BstSCI | CCNGG | 7 cut(s) | 57, 147, 700, 750, 807, 821, 822 |
| BstSFI | CTRYAG | 2 cut(s) | 206, 599 |
| BstSLI | GKGCMC | 1 cut(s) | 120 |
| BstUI | CGCG | 1 cut(s) | 498 |
| BstV1I | GCAGC | 4 cut(s) | 360, 575, 585, 613 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 580 |
| BstZI | CGGCCG | 2 cut(s) | 504, 903 |
| Bsu15I | ATCGAT | 1 cut(s) | 635 |
| BsuTUI | ATCGAT | 1 cut(s) | 635 |
| BtgI | CCRYGG | 1 cut(s) | 579 |
| BtrI | CACGTC | 1 cut(s) | 121 |
| BtsCI | GGATG | 1 cut(s) | 835 |
| BtsIMutI | CAGTG | 2 cut(s) | 425, 580 |
| Cac8I | GCNNGC | 9 cut(s) | 37, 202, 299, 303, 475, 654, 721, 814, 900 |
| CfoI | GCGC | 1 cut(s) | 500 |
| Cfr10I | RCCGGY | 1 cut(s) | 640 |
| Cfr13I | GGNCC | 4 cut(s) | 131, 226, 814, 867 |
| Cfr9I | CCCGGG | 1 cut(s) | 822 |
| ClaI | ATCGAT | 1 cut(s) | 635 |
| CseI | GACGC | 2 cut(s) | 144, 296 |
| Csp6I | GTAC | 3 cut(s) | 75, 523, 681 |
| CviAII | CATG | 4 cut(s) | 230, 364, 580, 797 |
| CviQI | GTAC | 3 cut(s) | 75, 523, 681 |
| DdeI | CTNAG | 3 cut(s) | 185, 479, 765 |
| DriI | GACNNNNNGTC | 1 cut(s) | 849 |
| EaeI | YGGCCR | 4 cut(s) | 303, 504, 582, 903 |
| EagI | CGGCCG | 2 cut(s) | 504, 903 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 849 |
| EciI | GGCGGA | 3 cut(s) | 551, 657, 759 |
| Ecl136II | GAGCTC | 1 cut(s) | 184 |
| EclXI | CGGCCG | 2 cut(s) | 504, 903 |
| Eco130I | CCWWGG | 3 cut(s) | 393, 444, 579 |
| Eco147I | AGGCCT | 1 cut(s) | 204 |
| Eco24I | GRGCYC | 1 cut(s) | 186 |
| Eco31I | GGTCTC | 1 cut(s) | 836 |
| Eco47I | GGWCC | 1 cut(s) | 867 |
| Eco52I | CGGCCG | 2 cut(s) | 504, 903 |
| Eco53kI | GAGCTC | 1 cut(s) | 184 |
| Eco57I | CTGAAG | 1 cut(s) | 85 |
| Eco88I | CYCGRG | 2 cut(s) | 822, 861 |
| EcoICRI | GAGCTC | 1 cut(s) | 184 |
| EcoRII | CCWGG | 4 cut(s) | 57, 147, 700, 807 |
| EcoT14I | CCWWGG | 3 cut(s) | 393, 444, 579 |
| EcoT38I | GRGCYC | 1 cut(s) | 186 |
| ErhI | CCWWGG | 3 cut(s) | 393, 444, 579 |
| FaeI | CATG | 4 cut(s) | 233, 367, 583, 800 |
| FaiI | YATR | 4 cut(s) | 231, 365, 581, 798 |
| FaqI | GGGAC | 3 cut(s) | 227, 352, 837 |
| FatI | CATG | 4 cut(s) | 229, 363, 579, 796 |
| FauI | CCCGC | 5 cut(s) | 5, 369, 482, 805, 919 |
| FokI | GGATG | 1 cut(s) | 842 |
| FriOI | GRGCYC | 1 cut(s) | 186 |
| FspBI | CTAG | 1 cut(s) | 849 |
| GlaI | GCGC | 1 cut(s) | 499 |
| GsuI | CTGGAG | 2 cut(s) | 80, 200 |
| HapII | CCGG | 4 cut(s) | 320, 641, 752, 823 |
| HgaI | GACGC | 2 cut(s) | 144, 296 |
| HhaI | GCGC | 1 cut(s) | 500 |
| Hin1I | GRCGYC | 1 cut(s) | 155 |
| Hin1II | CATG | 4 cut(s) | 233, 367, 583, 800 |
| Hin6I | GCGC | 1 cut(s) | 498 |
| HinP1I | GCGC | 1 cut(s) | 498 |
| HincII | GTYRAC | 1 cut(s) | 88 |
| HindII | GTYRAC | 1 cut(s) | 88 |
| HinfI | GANTC | 4 cut(s) | 425, 518, 747, 772 |
| HpaII | CCGG | 4 cut(s) | 320, 641, 752, 823 |
| HphI | GGTGA | 3 cut(s) | 19, 19, 460 |
| Hpy166II | GTNNAC | 1 cut(s) | 88 |
| Hpy188I | TCNGA | 2 cut(s) | 787, 871 |
| Hpy8I | GTNNAC | 1 cut(s) | 88 |
| Hpy99I | CGWCG | 3 cut(s) | 125, 512, 515 |
| HpyAV | CCTTC | 4 cut(s) | 109, 562, 601, 707 |
| HpyCH4III | ACNGT | 4 cut(s) | 7, 275, 342, 456 |
| HpyCH4IV | ACGT | 1 cut(s) | 120 |
| HpyCH4V | TGCA | 1 cut(s) | 601 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 287, 440, 569, 646, 662, 911 |
| HpyF3I | CTNAG | 3 cut(s) | 185, 479, 765 |
| HpySE526I | ACGT | 1 cut(s) | 120 |
| Hsp92I | GRCGYC | 1 cut(s) | 155 |
| Hsp92II | CATG | 4 cut(s) | 233, 367, 583, 800 |
| HspAI | GCGC | 1 cut(s) | 498 |
| LmnI | GCTCC | 5 cut(s) | 181, 328, 355, 492, 670 |
| Lsp1109I | GCAGC | 4 cut(s) | 360, 575, 585, 613 |
| LweI | GCATC | 3 cut(s) | 268, 627, 641 |
| MaeI | CTAG | 1 cut(s) | 849 |
| MaeII | ACGT | 1 cut(s) | 120 |
| MbiI | CCGCTC | 3 cut(s) | 12, 39, 331 |
| MhlI | GDGCHC | 2 cut(s) | 120, 186 |
| MlsI | TGGCCA | 1 cut(s) | 584 |
| MluNI | TGGCCA | 1 cut(s) | 584 |
| MlyI | GAGTC | 4 cut(s) | 434, 527, 741, 766 |
| MmeI | TCCRAC | 3 cut(s) | 333, 438, 894 |
| Mox20I | TGGCCA | 1 cut(s) | 584 |
| MroXI | GAANNNNTTC | 1 cut(s) | 414 |
| MscI | TGGCCA | 1 cut(s) | 584 |
| MslI | CAYNNNNRTG | 1 cut(s) | 824 |
| Msp20I | TGGCCA | 1 cut(s) | 584 |
| MspA1I | CMGCKG | 1 cut(s) | 769 |
| MspI | CCGG | 4 cut(s) | 320, 641, 752, 823 |
| MspR9I | CCNGG | 7 cut(s) | 59, 149, 702, 752, 809, 823, 824 |
| MvaI | CCWGG | 4 cut(s) | 59, 149, 702, 809 |
| MvnI | CGCG | 1 cut(s) | 498 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 287, 440, 569, 646, 662, 911 |
| NciI | CCSGG | 3 cut(s) | 752, 823, 824 |
| NcoI | CCATGG | 1 cut(s) | 579 |
| NlaIII | CATG | 4 cut(s) | 233, 367, 583, 800 |
| NlaIV | GGNNCC | 3 cut(s) | 494, 613, 868 |
| NmeAIII | GCCGAG | 1 cut(s) | 511 |
| NspI | RCATGY | 1 cut(s) | 367 |
| OliI | CACNNNNGTG | 1 cut(s) | 824 |
| PceI | AGGCCT | 1 cut(s) | 204 |
| PciI | ACATGT | 1 cut(s) | 363 |
| PdmI | GAANNNNTTC | 1 cut(s) | 414 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 621 |
| PfoI | TCCNGGA | 2 cut(s) | 147, 750 |
| PleI | GAGTC | 4 cut(s) | 433, 526, 741, 766 |
| PpsI | GAGTC | 4 cut(s) | 433, 526, 741, 766 |
| PscI | ACATGT | 1 cut(s) | 363 |
| Psp124BI | GAGCTC | 1 cut(s) | 186 |
| Psp6I | CCWGG | 4 cut(s) | 57, 147, 700, 807 |
| PspGI | CCWGG | 4 cut(s) | 57, 147, 700, 807 |
| PspN4I | GGNNCC | 3 cut(s) | 494, 613, 868 |
| PspPI | GGNCC | 4 cut(s) | 131, 226, 814, 867 |
| PstI | CTGCAG | 1 cut(s) | 603 |
| RsaI | GTAC | 3 cut(s) | 76, 524, 682 |
| RsaNI | GTAC | 3 cut(s) | 75, 523, 681 |
| RseI | CAYNNNNRTG | 1 cut(s) | 824 |
| SacI | GAGCTC | 1 cut(s) | 186 |
| Sau96I | GGNCC | 4 cut(s) | 131, 226, 814, 867 |
| ScaI | AGTACT | 1 cut(s) | 682 |
| SchI | GAGTC | 4 cut(s) | 434, 527, 741, 766 |
| ScrFI | CCNGG | 7 cut(s) | 59, 149, 702, 752, 809, 823, 824 |
| SduI | GDGCHC | 2 cut(s) | 120, 186 |
| SfaNI | GCATC | 3 cut(s) | 268, 627, 641 |
| SfcI | CTRYAG | 2 cut(s) | 206, 599 |
| SinI | GGWCC | 1 cut(s) | 867 |
| SmaI | CCCGGG | 1 cut(s) | 824 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 824 |
| SseBI | AGGCCT | 1 cut(s) | 204 |
| SspMI | CTAG | 1 cut(s) | 849 |
| SstI | GAGCTC | 1 cut(s) | 186 |
| StuI | AGGCCT | 1 cut(s) | 204 |
| StyD4I | CCNGG | 7 cut(s) | 57, 147, 700, 750, 807, 821, 822 |
| StyI | CCWWGG | 3 cut(s) | 393, 444, 579 |
| TaaI | ACNGT | 4 cut(s) | 7, 275, 342, 456 |
| TaiI | ACGT | 1 cut(s) | 123 |
| TaqI | TCGA | 3 cut(s) | 249, 618, 635 |
| TaqII | GACCGA | 1 cut(s) | 572 |
| TatI | WGTACW | 1 cut(s) | 680 |
| TauI | GCSGC | 9 cut(s) | 57, 136, 284, 434, 498, 652, 895, 898, 905 |
| TscAI | CASTG | 2 cut(s) | 425, 580 |
| TseI | GCWGC | 4 cut(s) | 373, 563, 598, 601 |
| TspDTI | ATGAA | 1 cut(s) | 246 |
| TspMI | CCCGGG | 1 cut(s) | 822 |
| TspRI | CASTG | 2 cut(s) | 425, 580 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 621 |
| VpaK11BI | GGWCC | 1 cut(s) | 867 |
| XceI | RCATGY | 1 cut(s) | 367 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 586 |
| XmaI | CCCGGG | 1 cut(s) | 822 |
| XmnI | GAANNNNTTC | 1 cut(s) | 414 |
| XspI | CTAG | 1 cut(s) | 849 |
| ZrmI | AGTACT | 1 cut(s) | 682 |