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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 224, 260 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 270 |
| AccBSI | CCGCTC | 1 cut(s) | 464 |
| AccII | CGCG | 1 cut(s) | 513 |
| AcoI | YGGCCR | 4 cut(s) | 36, 159, 459, 508 |
| AcsI | RAATTY | 1 cut(s) | 170 |
| AcyI | GRCGYC | 2 cut(s) | 225, 281 |
| AfaI | GTAC | 1 cut(s) | 315 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 25, 70, 90, 130, 270, 436 |
| AgsI | TTSAA | 1 cut(s) | 359 |
| AjnI | CCWGG | 1 cut(s) | 83 |
| AluBI | AGCT | 1 cut(s) | 144 |
| AluI | AGCT | 1 cut(s) | 144 |
| Alw26I | GTCTC | 2 cut(s) | 373, 485 |
| Ama87I | CYCGRG | 2 cut(s) | 370, 471 |
| AoxI | GGCC | 6 cut(s) | 15, 36, 159, 331, 459, 508 |
| ApaI | GGGCCC | 1 cut(s) | 19 |
| ApeKI | GCWGC | 5 cut(s) | 22, 67, 152, 298, 375 |
| ApoI | RAATTY | 1 cut(s) | 170 |
| AspLEI | GCGC | 2 cut(s) | 227, 365 |
| AspS9I | GGNCC | 5 cut(s) | 15, 16, 121, 332, 483 |
| AsuC2I | CCSGG | 1 cut(s) | 412 |
| AsuHPI | GGTGA | 1 cut(s) | 109 |
| AvaI | CYCGRG | 2 cut(s) | 370, 471 |
| AvaII | GGWCC | 2 cut(s) | 121, 483 |
| BaeGI | GKGCMC | 1 cut(s) | 19 |
| BanI | GGYRCC | 2 cut(s) | 224, 260 |
| BanII | GRGCYC | 1 cut(s) | 19 |
| BbvCI | CCTCAGC | 1 cut(s) | 114 |
| BbvI | GCAGC | 5 cut(s) | 9, 79, 139, 285, 387 |
| BccI | CCATC | 1 cut(s) | 473 |
| BceAI | ACGGC | 1 cut(s) | 146 |
| BciT130I | CCWGG | 1 cut(s) | 85 |
| BcnI | CCSGG | 1 cut(s) | 412 |
| BcoDI | GTCTC | 2 cut(s) | 373, 485 |
| BfaI | CTAG | 2 cut(s) | 230, 338 |
| BfmI | CTRYAG | 2 cut(s) | 23, 65 |
| BfoI | RGCGCY | 2 cut(s) | 228, 366 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 507 |
| Bme1390I | CCNGG | 2 cut(s) | 85, 412 |
| Bme18I | GGWCC | 2 cut(s) | 121, 483 |
| BmeT110I | CYCGRG | 2 cut(s) | 370, 471 |
| BmgT120I | GGNCC | 5 cut(s) | 15, 16, 121, 332, 483 |
| BmiI | GGNNCC | 4 cut(s) | 17, 226, 262, 484 |
| BmrFI | CCNGG | 2 cut(s) | 85, 412 |
| BmrI | ACTGGG | 2 cut(s) | 280, 424 |
| BmsI | GCATC | 1 cut(s) | 234 |
| BmuI | ACTGGG | 2 cut(s) | 280, 424 |
| BpmI | CTGGAG | 2 cut(s) | 23, 128 |
| Bpu10I | CCTNAGC | 2 cut(s) | 42, 114 |
| BpuEI | CTTGAG | 1 cut(s) | 148 |
| BpuMI | CCSGG | 1 cut(s) | 412 |
| BsaBI | GATNNNNATC | 1 cut(s) | 59 |
| BsaHI | GRCGYC | 2 cut(s) | 225, 281 |
| BsaJI | CCNNGG | 1 cut(s) | 162 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 372, 402 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 25, 70, 90, 130, 270, 436 |
| Bse118I | RCCGGY | 3 cut(s) | 319, 397, 449 |
| Bse1I | ACTGG | 4 cut(s) | 111, 275, 430, 511 |
| Bse8I | GATNNNNATC | 1 cut(s) | 59 |
| BseBI | CCWGG | 1 cut(s) | 85 |
| BseDI | CCNNGG | 1 cut(s) | 162 |
| BseGI | GGATG | 3 cut(s) | 352, 409, 484 |
| BseJI | GATNNNNATC | 1 cut(s) | 59 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 25, 70, 90, 130, 270, 436 |
| BseMII | CTCAG | 1 cut(s) | 105 |
| BseNI | ACTGG | 4 cut(s) | 111, 275, 430, 511 |
| BseSI | GKGCMC | 1 cut(s) | 19 |
| BseXI | GCAGC | 5 cut(s) | 9, 79, 139, 285, 387 |
| BseYI | CCCAGC | 1 cut(s) | 285 |
| BsgI | GTGCAG | 1 cut(s) | 362 |
| Bsh1236I | CGCG | 1 cut(s) | 513 |
| BshFI | GGCC | 6 cut(s) | 17, 38, 161, 333, 461, 510 |
| BshNI | GGYRCC | 2 cut(s) | 224, 260 |
| BsiHKCI | CYCGRG | 2 cut(s) | 370, 471 |
| BsiSI | CCGG | 4 cut(s) | 320, 398, 412, 450 |
| BslFI | GGGAC | 3 cut(s) | 146, 268, 496 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 25, 70, 90, 130, 270, 436 |
| BsmAI | GTCTC | 2 cut(s) | 373, 485 |
| BsmFI | GGGAC | 3 cut(s) | 146, 268, 496 |
| BsnI | GGCC | 6 cut(s) | 17, 38, 161, 333, 461, 510 |
| BsoBI | CYCGRG | 2 cut(s) | 370, 471 |
| Bsp120I | GGGCCC | 1 cut(s) | 15 |
| Bsp1286I | GDGCHC | 1 cut(s) | 19 |
| BspANI | GGCC | 6 cut(s) | 17, 38, 161, 333, 461, 510 |
| BspCNI | CTCAG | 1 cut(s) | 106 |
| BspFNI | CGCG | 1 cut(s) | 513 |
| BspLI | GGNNCC | 4 cut(s) | 17, 226, 262, 484 |
| BspMAI | CTGCAG | 2 cut(s) | 27, 69 |
| BspT107I | GGYRCC | 2 cut(s) | 224, 260 |
| BsrBI | CCGCTC | 1 cut(s) | 464 |
| BsrFI | RCCGGY | 3 cut(s) | 319, 397, 449 |
| BsrI | ACTGG | 4 cut(s) | 111, 275, 430, 511 |
| BssAI | RCCGGY | 3 cut(s) | 319, 397, 449 |
| BssECI | CCNNGG | 1 cut(s) | 162 |
| BssNI | GRCGYC | 2 cut(s) | 225, 281 |
| Bst2UI | CCWGG | 1 cut(s) | 85 |
| Bst4CI | ACNGT | 2 cut(s) | 180, 295 |
| Bst6I | CTCTTC | 1 cut(s) | 320 |
| BstACI | GRCGYC | 2 cut(s) | 225, 281 |
| BstC8I | GCNNGC | 5 cut(s) | 223, 303, 321, 335, 399 |
| BstDEI | CTNAG | 2 cut(s) | 42, 114 |
| BstDSI | CCRYGG | 1 cut(s) | 162 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 23 |
| BstF5I | GGATG | 3 cut(s) | 352, 409, 484 |
| BstFNI | CGCG | 1 cut(s) | 513 |
| BstH2I | RGCGCY | 2 cut(s) | 228, 366 |
| BstHHI | GCGC | 2 cut(s) | 227, 365 |
| BstMAI | GTCTC | 2 cut(s) | 373, 485 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 158, 295, 507 |
| BstNI | CCWGG | 1 cut(s) | 85 |
| BstSCI | CCNGG | 2 cut(s) | 83, 410 |
| BstSFI | CTRYAG | 2 cut(s) | 23, 65 |
| BstSLI | GKGCMC | 1 cut(s) | 19 |
| BstUI | CGCG | 1 cut(s) | 513 |
| BstV1I | GCAGC | 5 cut(s) | 9, 79, 139, 285, 387 |
| BsuRI | GGCC | 6 cut(s) | 17, 38, 161, 333, 461, 510 |
| BtgI | CCRYGG | 1 cut(s) | 162 |
| BtgZI | GCGATG | 1 cut(s) | 215 |
| BtsCI | GGATG | 3 cut(s) | 352, 409, 484 |
| BtsIMutI | CAGTG | 2 cut(s) | 291, 504 |
| Cac8I | GCNNGC | 5 cut(s) | 223, 303, 321, 335, 399 |
| CfoI | GCGC | 2 cut(s) | 227, 365 |
| Cfr10I | RCCGGY | 3 cut(s) | 319, 397, 449 |
| Cfr13I | GGNCC | 5 cut(s) | 15, 16, 121, 332, 483 |
| CseI | GACGC | 1 cut(s) | 270 |
| Csp6I | GTAC | 1 cut(s) | 314 |
| CviQI | GTAC | 1 cut(s) | 314 |
| DdeI | CTNAG | 2 cut(s) | 42, 114 |
| DinI | GGCGCC | 1 cut(s) | 226 |
| DraI | TTTAAA | 1 cut(s) | 175 |
| EaeI | YGGCCR | 4 cut(s) | 36, 159, 459, 508 |
| Eam1104I | CTCTTC | 1 cut(s) | 320 |
| EarI | CTCTTC | 1 cut(s) | 320 |
| EciI | GGCGGA | 4 cut(s) | 200, 416, 430, 491 |
| Eco24I | GRGCYC | 1 cut(s) | 19 |
| Eco32I | GATATC | 1 cut(s) | 61 |
| Eco47I | GGWCC | 2 cut(s) | 121, 483 |
| Eco88I | CYCGRG | 2 cut(s) | 370, 471 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 23 |
| EcoO109I | RGGNCCY | 2 cut(s) | 15, 16 |
| EcoRII | CCWGG | 1 cut(s) | 83 |
| EcoRV | GATATC | 1 cut(s) | 61 |
| EcoT38I | GRGCYC | 1 cut(s) | 19 |
| EgeI | GGCGCC | 1 cut(s) | 226 |
| EheI | GGCGCC | 1 cut(s) | 226 |
| FaiI | YATR | 2 cut(s) | 192, 458 |
| FaqI | GGGAC | 3 cut(s) | 146, 268, 496 |
| FauI | CCCGC | 2 cut(s) | 63, 342 |
| FokI | GGATG | 3 cut(s) | 359, 416, 491 |
| FriOI | GRGCYC | 1 cut(s) | 19 |
| FspBI | CTAG | 2 cut(s) | 230, 338 |
| GlaI | GCGC | 2 cut(s) | 226, 364 |
| GsaI | CCCAGC | 1 cut(s) | 289 |
| GsuI | CTGGAG | 2 cut(s) | 23, 128 |
| HaeII | RGCGCY | 2 cut(s) | 228, 366 |
| HaeIII | GGCC | 6 cut(s) | 17, 38, 161, 333, 461, 510 |
| HapII | CCGG | 4 cut(s) | 320, 398, 412, 450 |
| HgaI | GACGC | 1 cut(s) | 270 |
| HhaI | GCGC | 2 cut(s) | 227, 365 |
| Hin1I | GRCGYC | 2 cut(s) | 225, 281 |
| Hin6I | GCGC | 2 cut(s) | 225, 363 |
| HinP1I | GCGC | 2 cut(s) | 225, 363 |
| HinfI | GANTC | 4 cut(s) | 74, 407, 418, 493 |
| HpaII | CCGG | 4 cut(s) | 320, 398, 412, 450 |
| HphI | GGTGA | 1 cut(s) | 109 |
| Hpy188I | TCNGA | 1 cut(s) | 436 |
| HpyAV | CCTTC | 3 cut(s) | 131, 211, 353 |
| HpyCH4III | ACNGT | 2 cut(s) | 180, 295 |
| HpyCH4V | TGCA | 4 cut(s) | 25, 67, 301, 343 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 158, 295, 507 |
| HpyF3I | CTNAG | 2 cut(s) | 42, 114 |
| Hsp92I | GRCGYC | 2 cut(s) | 225, 281 |
| HspAI | GCGC | 2 cut(s) | 225, 363 |
| KasI | GGCGCC | 1 cut(s) | 224 |
| KroI | GCCGGC | 2 cut(s) | 319, 397 |
| KroNI | GCCGGC | 2 cut(s) | 321, 399 |
| LmnI | GCTCC | 2 cut(s) | 4, 141 |
| Lsp1109I | GCAGC | 5 cut(s) | 9, 79, 139, 285, 387 |
| LweI | GCATC | 1 cut(s) | 234 |
| MaeI | CTAG | 2 cut(s) | 230, 338 |
| MbiI | CCGCTC | 1 cut(s) | 464 |
| MboII | GAAGA | 4 cut(s) | 64, 112, 319, 337 |
| MhlI | GDGCHC | 1 cut(s) | 19 |
| MluCI | AATT | 2 cut(s) | 170, 209 |
| Mly113I | GGCGCC | 1 cut(s) | 225 |
| MlyI | GAGTC | 2 cut(s) | 83, 487 |
| MmeI | TCCRAC | 1 cut(s) | 414 |
| MnlI | CCTC | 6 cut(s) | 88, 103, 109, 123, 430, 432 |
| MreI | CGCCGGCG | 2 cut(s) | 319, 397 |
| MroNI | GCCGGC | 2 cut(s) | 319, 397 |
| MseI | TTAA | 1 cut(s) | 174 |
| MspA1I | CMGCKG | 3 cut(s) | 70, 152, 378 |
| MspI | CCGG | 4 cut(s) | 320, 398, 412, 450 |
| MspR9I | CCNGG | 2 cut(s) | 85, 412 |
| MvaI | CCWGG | 1 cut(s) | 85 |
| MvnI | CGCG | 1 cut(s) | 513 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 158, 295, 507 |
| NaeI | GCCGGC | 2 cut(s) | 321, 399 |
| NarI | GGCGCC | 1 cut(s) | 225 |
| NciI | CCSGG | 1 cut(s) | 412 |
| NgoMIV | GCCGGC | 2 cut(s) | 319, 397 |
| NlaIV | GGNNCC | 4 cut(s) | 17, 226, 262, 484 |
| PdiI | GCCGGC | 2 cut(s) | 321, 399 |
| PfeI | GAWTC | 2 cut(s) | 407, 418 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 270 |
| PleI | GAGTC | 2 cut(s) | 82, 487 |
| PluTI | GGCGCC | 1 cut(s) | 228 |
| PpsI | GAGTC | 2 cut(s) | 82, 487 |
| Psp6I | CCWGG | 1 cut(s) | 83 |
| PspFI | CCCAGC | 1 cut(s) | 285 |
| PspGI | CCWGG | 1 cut(s) | 83 |
| PspN4I | GGNNCC | 4 cut(s) | 17, 226, 262, 484 |
| PspOMI | GGGCCC | 1 cut(s) | 15 |
| PspPI | GGNCC | 5 cut(s) | 15, 16, 121, 332, 483 |
| PstI | CTGCAG | 2 cut(s) | 27, 69 |
| RsaI | GTAC | 1 cut(s) | 315 |
| RsaNI | GTAC | 1 cut(s) | 314 |
| SaqAI | TTAA | 1 cut(s) | 174 |
| Sau96I | GGNCC | 5 cut(s) | 15, 16, 121, 332, 483 |
| SchI | GAGTC | 2 cut(s) | 83, 487 |
| ScrFI | CCNGG | 2 cut(s) | 85, 412 |
| SduI | GDGCHC | 1 cut(s) | 19 |
| SetI | ASST | 4 cut(s) | 99, 120, 146, 441 |
| SfaNI | GCATC | 1 cut(s) | 234 |
| SfcI | CTRYAG | 2 cut(s) | 23, 65 |
| SfoI | GGCGCC | 1 cut(s) | 226 |
| SgrAI | CRCCGGYG | 2 cut(s) | 319, 397 |
| SinI | GGWCC | 2 cut(s) | 121, 483 |
| SmlI | CTYRAG | 1 cut(s) | 127 |
| SmoI | CTYRAG | 1 cut(s) | 127 |
| Sse9I | AATT | 2 cut(s) | 170, 209 |
| SspDI | GGCGCC | 1 cut(s) | 224 |
| SspMI | CTAG | 2 cut(s) | 230, 338 |
| StyD4I | CCNGG | 2 cut(s) | 83, 410 |
| TaaI | ACNGT | 2 cut(s) | 180, 295 |
| TasI | AATT | 2 cut(s) | 170, 209 |
| TauI | GCSGC | 6 cut(s) | 41, 83, 152, 397, 464, 513 |
| TfiI | GAWTC | 2 cut(s) | 407, 418 |
| Tru1I | TTAA | 1 cut(s) | 174 |
| Tru9I | TTAA | 1 cut(s) | 174 |
| TscAI | CASTG | 2 cut(s) | 298, 511 |
| TseI | GCWGC | 5 cut(s) | 22, 67, 152, 298, 375 |
| TspRI | CASTG | 2 cut(s) | 298, 511 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 270 |
| VpaK11BI | GGWCC | 2 cut(s) | 121, 483 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 23 |
| XapI | RAATTY | 1 cut(s) | 170 |
| XspI | CTAG | 2 cut(s) | 230, 338 |