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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 420 |
| AccB1I | GGYRCC | 1 cut(s) | 428 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 135, 438 |
| AccBSI | CCGCTC | 1 cut(s) | 148 |
| AccII | CGCG | 1 cut(s) | 111 |
| AclWI | GGATC | 3 cut(s) | 147, 204, 223 |
| AcoI | YGGCCR | 1 cut(s) | 207 |
| AcuI | CTGAAG | 1 cut(s) | 437 |
| AcyI | GRCGYC | 1 cut(s) | 429 |
| AfaI | GTAC | 1 cut(s) | 359 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 82, 135, 193, 238, 438, 494, 559 |
| AgsI | TTSAA | 2 cut(s) | 236, 343 |
| AluBI | AGCT | 3 cut(s) | 169, 295, 515 |
| AluI | AGCT | 3 cut(s) | 169, 295, 515 |
| Alw26I | GTCTC | 2 cut(s) | 26, 130 |
| AlwI | GGATC | 3 cut(s) | 147, 204, 223 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 76 |
| AoxI | GGCC | 2 cut(s) | 42, 207 |
| ApeKI | GCWGC | 4 cut(s) | 323, 380, 395, 398 |
| AspLEI | GCGC | 1 cut(s) | 431 |
| AsuHPI | GGTGA | 2 cut(s) | 379, 560 |
| BanI | GGYRCC | 1 cut(s) | 428 |
| BbvCI | CCTCAGC | 1 cut(s) | 516 |
| BbvI | GCAGC | 4 cut(s) | 310, 367, 382, 385 |
| BccI | CCATC | 2 cut(s) | 295, 463 |
| BcoDI | GTCTC | 2 cut(s) | 26, 130 |
| BfoI | RGCGCY | 1 cut(s) | 432 |
| BfuAI | ACCTGC | 1 cut(s) | 420 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 332 |
| BmiI | GGNNCC | 2 cut(s) | 430, 504 |
| BmrI | ACTGGG | 1 cut(s) | 448 |
| BmsI | GCATC | 2 cut(s) | 85, 94 |
| BmuI | ACTGGG | 1 cut(s) | 448 |
| BpmI | CTGGAG | 4 cut(s) | 8, 191, 296, 317 |
| Bpu10I | CCTNAGC | 2 cut(s) | 516, 529 |
| BpuEI | CTTGAG | 1 cut(s) | 164 |
| BsaHI | GRCGYC | 1 cut(s) | 429 |
| BsaI | GGTCTC | 1 cut(s) | 26 |
| BsaJI | CCNNGG | 4 cut(s) | 45, 99, 109, 210 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 146, 176 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 82, 135, 193, 238, 438, 494, 559 |
| Bse1I | ACTGG | 2 cut(s) | 207, 443 |
| BseDI | CCNNGG | 4 cut(s) | 45, 99, 109, 210 |
| BseGI | GGATG | 3 cut(s) | 109, 455, 568 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 82, 135, 193, 238, 438, 494, 559 |
| BseMII | CTCAG | 4 cut(s) | 345, 507, 543, 605 |
| BseNI | ACTGG | 2 cut(s) | 207, 443 |
| BseRI | GAGGAG | 1 cut(s) | 23 |
| BseXI | GCAGC | 4 cut(s) | 310, 367, 382, 385 |
| BseYI | CCCAGC | 2 cut(s) | 165, 556 |
| BsgI | GTGCAG | 1 cut(s) | 630 |
| Bsh1236I | CGCG | 1 cut(s) | 111 |
| BshFI | GGCC | 2 cut(s) | 44, 209 |
| BshNI | GGYRCC | 1 cut(s) | 428 |
| BslFI | GGGAC | 1 cut(s) | 436 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 82, 135, 193, 238, 438, 494, 559 |
| BsmAI | GTCTC | 2 cut(s) | 26, 130 |
| BsmFI | GGGAC | 1 cut(s) | 436 |
| BsnI | GGCC | 2 cut(s) | 44, 209 |
| Bso31I | GGTCTC | 1 cut(s) | 26 |
| Bsp143I | GATC | 4 cut(s) | 12, 139, 196, 228 |
| Bsp19I | CCATGG | 1 cut(s) | 99 |
| BspANI | GGCC | 2 cut(s) | 44, 209 |
| BspCNI | CTCAG | 4 cut(s) | 346, 508, 542, 604 |
| BspFNI | CGCG | 1 cut(s) | 111 |
| BspLI | GGNNCC | 2 cut(s) | 430, 504 |
| BspMI | ACCTGC | 1 cut(s) | 420 |
| BspPI | GGATC | 3 cut(s) | 147, 204, 223 |
| BspT107I | GGYRCC | 1 cut(s) | 428 |
| BspTNI | GGTCTC | 1 cut(s) | 26 |
| BsrBI | CCGCTC | 1 cut(s) | 148 |
| BsrI | ACTGG | 2 cut(s) | 207, 443 |
| BssECI | CCNNGG | 4 cut(s) | 45, 99, 109, 210 |
| BssMI | GATC | 4 cut(s) | 12, 139, 196, 228 |
| BssNI | GRCGYC | 1 cut(s) | 429 |
| BssT1I | CCWWGG | 3 cut(s) | 45, 99, 210 |
| Bst4CI | ACNGT | 1 cut(s) | 331 |
| BstACI | GRCGYC | 1 cut(s) | 429 |
| BstC8I | GCNNGC | 2 cut(s) | 109, 493 |
| BstDEI | CTNAG | 7 cut(s) | 2, 81, 252, 354, 516, 529, 591 |
| BstDSI | CCRYGG | 2 cut(s) | 99, 109 |
| BstEII | GGTNACC | 1 cut(s) | 548 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 80, 191 |
| BstF5I | GGATG | 3 cut(s) | 109, 455, 568 |
| BstFNI | CGCG | 1 cut(s) | 111 |
| BstH2I | RGCGCY | 1 cut(s) | 432 |
| BstHHI | GCGC | 1 cut(s) | 431 |
| BstKTI | GATC | 4 cut(s) | 15, 142, 199, 231 |
| BstMAI | GTCTC | 2 cut(s) | 26, 130 |
| BstMBI | GATC | 4 cut(s) | 12, 139, 196, 228 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 34, 104, 332, 386, 395, 534, 632 |
| BstPI | GGTNACC | 1 cut(s) | 548 |
| BstUI | CGCG | 1 cut(s) | 111 |
| BstV1I | GCAGC | 4 cut(s) | 310, 367, 382, 385 |
| BstX2I | RGATCY | 2 cut(s) | 139, 228 |
| BstYI | RGATCY | 2 cut(s) | 139, 228 |
| BsuRI | GGCC | 2 cut(s) | 44, 209 |
| BtgI | CCRYGG | 2 cut(s) | 99, 109 |
| BtsCI | GGATG | 3 cut(s) | 109, 455, 568 |
| BtsI | GCAGTG | 1 cut(s) | 77 |
| BtsIMutI | CAGTG | 2 cut(s) | 77, 327 |
| BveI | ACCTGC | 1 cut(s) | 420 |
| Cac8I | GCNNGC | 2 cut(s) | 109, 493 |
| CaiI | CAGNNNCTG | 1 cut(s) | 76 |
| CfoI | GCGC | 1 cut(s) | 431 |
| Cfr42I | CCGCGG | 1 cut(s) | 112 |
| Csp6I | GTAC | 1 cut(s) | 358 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 480, 515 |
| CviAII | CATG | 1 cut(s) | 100 |
| CviQI | GTAC | 1 cut(s) | 358 |
| DdeI | CTNAG | 7 cut(s) | 2, 81, 252, 354, 516, 529, 591 |
| DinI | GGCGCC | 1 cut(s) | 430 |
| DpnI | GATC | 4 cut(s) | 14, 141, 198, 230 |
| DpnII | GATC | 4 cut(s) | 12, 139, 196, 228 |
| EaeI | YGGCCR | 1 cut(s) | 207 |
| EciI | GGCGGA | 2 cut(s) | 101, 448 |
| Eco130I | CCWWGG | 3 cut(s) | 45, 99, 210 |
| Eco31I | GGTCTC | 1 cut(s) | 26 |
| Eco57I | CTGAAG | 1 cut(s) | 437 |
| Eco91I | GGTNACC | 1 cut(s) | 548 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 80, 191 |
| EcoO65I | GGTNACC | 1 cut(s) | 548 |
| EcoT14I | CCWWGG | 3 cut(s) | 45, 99, 210 |
| EgeI | GGCGCC | 1 cut(s) | 430 |
| EheI | GGCGCC | 1 cut(s) | 430 |
| ErhI | CCWWGG | 3 cut(s) | 45, 99, 210 |
| FaeI | CATG | 1 cut(s) | 103 |
| FaiI | YATR | 4 cut(s) | 101, 182, 317, 620 |
| FaqI | GGGAC | 1 cut(s) | 436 |
| FatI | CATG | 1 cut(s) | 99 |
| FauI | CCCGC | 3 cut(s) | 21, 116, 357 |
| FokI | GGATG | 3 cut(s) | 116, 442, 575 |
| GlaI | GCGC | 1 cut(s) | 430 |
| GsaI | CCCAGC | 2 cut(s) | 169, 560 |
| GsuI | CTGGAG | 4 cut(s) | 8, 191, 296, 317 |
| HaeII | RGCGCY | 1 cut(s) | 432 |
| HaeIII | GGCC | 2 cut(s) | 44, 209 |
| HhaI | GCGC | 1 cut(s) | 431 |
| Hin1I | GRCGYC | 1 cut(s) | 429 |
| Hin1II | CATG | 1 cut(s) | 103 |
| Hin6I | GCGC | 1 cut(s) | 429 |
| HinP1I | GCGC | 1 cut(s) | 429 |
| HinfI | GANTC | 3 cut(s) | 310, 464, 577 |
| HphI | GGTGA | 2 cut(s) | 379, 560 |
| Hpy166II | GTNNAC | 1 cut(s) | 258 |
| Hpy188I | TCNGA | 2 cut(s) | 17, 598 |
| Hpy188III | TCNNGA | 1 cut(s) | 143 |
| Hpy8I | GTNNAC | 1 cut(s) | 258 |
| HpyAV | CCTTC | 2 cut(s) | 187, 439 |
| HpyCH4III | ACNGT | 1 cut(s) | 331 |
| HpyCH4V | TGCA | 4 cut(s) | 37, 383, 491, 611 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 34, 104, 332, 386, 395, 534, 632 |
| HpyF3I | CTNAG | 7 cut(s) | 2, 81, 252, 354, 516, 529, 591 |
| Hsp92I | GRCGYC | 1 cut(s) | 429 |
| Hsp92II | CATG | 1 cut(s) | 103 |
| HspAI | GCGC | 1 cut(s) | 429 |
| KasI | GGCGCC | 1 cut(s) | 428 |
| KspI | CCGCGG | 1 cut(s) | 112 |
| Kzo9I | GATC | 4 cut(s) | 12, 139, 196, 228 |
| LmnI | GCTCC | 1 cut(s) | 172 |
| Lsp1109I | GCAGC | 4 cut(s) | 310, 367, 382, 385 |
| LweI | GCATC | 2 cut(s) | 85, 94 |
| MaeIII | GTNAC | 1 cut(s) | 548 |
| MalI | GATC | 4 cut(s) | 14, 141, 198, 230 |
| MbiI | CCGCTC | 1 cut(s) | 148 |
| MboI | GATC | 4 cut(s) | 12, 139, 196, 228 |
| MflI | RGATCY | 2 cut(s) | 139, 228 |
| MluCI | AATT | 2 cut(s) | 222, 403 |
| Mly113I | GGCGCC | 1 cut(s) | 429 |
| MlyI | GAGTC | 1 cut(s) | 473 |
| MmeI | TCCRAC | 2 cut(s) | 99, 611 |
| MseI | TTAA | 1 cut(s) | 216 |
| MspA1I | CMGCKG | 5 cut(s) | 28, 111, 169, 263, 560 |
| MvnI | CGCG | 1 cut(s) | 111 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 34, 104, 332, 386, 395, 534, 632 |
| NarI | GGCGCC | 1 cut(s) | 429 |
| NcoI | CCATGG | 1 cut(s) | 99 |
| NdeII | GATC | 4 cut(s) | 12, 139, 196, 228 |
| NlaIII | CATG | 1 cut(s) | 103 |
| NlaIV | GGNNCC | 2 cut(s) | 430, 504 |
| NmeAIII | GCCGAG | 1 cut(s) | 487 |
| NmuCI | GTSAC | 1 cut(s) | 548 |
| PfeI | GAWTC | 2 cut(s) | 310, 577 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 135, 438 |
| PleI | GAGTC | 1 cut(s) | 472 |
| PluTI | GGCGCC | 1 cut(s) | 432 |
| PpsI | GAGTC | 1 cut(s) | 472 |
| PspEI | GGTNACC | 1 cut(s) | 548 |
| PspFI | CCCAGC | 2 cut(s) | 165, 556 |
| PspN4I | GGNNCC | 2 cut(s) | 430, 504 |
| PstNI | CAGNNNCTG | 1 cut(s) | 76 |
| PsuI | RGATCY | 2 cut(s) | 139, 228 |
| PvuII | CAGCTG | 1 cut(s) | 169 |
| RsaI | GTAC | 1 cut(s) | 359 |
| RsaNI | GTAC | 1 cut(s) | 358 |
| SacII | CCGCGG | 1 cut(s) | 112 |
| SaqAI | TTAA | 1 cut(s) | 216 |
| Sau3AI | GATC | 4 cut(s) | 12, 139, 196, 228 |
| SchI | GAGTC | 1 cut(s) | 473 |
| SfaNI | GCATC | 2 cut(s) | 85, 94 |
| SfoI | GGCGCC | 1 cut(s) | 430 |
| Sfr303I | CCGCGG | 1 cut(s) | 112 |
| SgrBI | CCGCGG | 1 cut(s) | 112 |
| SmlI | CTYRAG | 1 cut(s) | 143 |
| SmoI | CTYRAG | 1 cut(s) | 143 |
| Sse9I | AATT | 2 cut(s) | 222, 403 |
| SspDI | GGCGCC | 1 cut(s) | 428 |
| StyI | CCWWGG | 3 cut(s) | 45, 99, 210 |
| TaaI | ACNGT | 1 cut(s) | 331 |
| TasI | AATT | 2 cut(s) | 222, 403 |
| TatI | WGTACW | 1 cut(s) | 357 |
| TauI | GCSGC | 6 cut(s) | 114, 209, 251, 338, 540, 626 |
| TfiI | GAWTC | 2 cut(s) | 310, 577 |
| Tru1I | TTAA | 1 cut(s) | 216 |
| Tru9I | TTAA | 1 cut(s) | 216 |
| TscAI | CASTG | 2 cut(s) | 77, 334 |
| TseFI | GTSAC | 1 cut(s) | 548 |
| TseI | GCWGC | 4 cut(s) | 323, 380, 395, 398 |
| Tsp45I | GTSAC | 1 cut(s) | 548 |
| TspDTI | ATGAA | 3 cut(s) | 206, 323, 579 |
| TspRI | CASTG | 2 cut(s) | 77, 334 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 135, 438 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 80, 191 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 52, 298 |