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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 87 |
| AccBSI | CCGCTC | 2 cut(s) | 31, 163 |
| AccII | CGCG | 2 cut(s) | 126, 330 |
| AcoI | YGGCCR | 3 cut(s) | 141, 219, 336 |
| AcuI | CTGAAG | 1 cut(s) | 44 |
| AcyI | GRCGYC | 1 cut(s) | 8 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 97, 150, 208, 253, 267, 334, 367, 381 |
| AflIII | ACRYGT | 1 cut(s) | 195 |
| AjnI | CCWGG | 3 cut(s) | 51, 266, 380 |
| AluBI | AGCT | 6 cut(s) | 37, 70, 133, 289, 403, 431 |
| AluI | AGCT | 6 cut(s) | 37, 70, 133, 289, 403, 431 |
| Alw21I | GWGCWC | 1 cut(s) | 39 |
| Alw26I | GTCTC | 1 cut(s) | 181 |
| Ama87I | CYCGRG | 1 cut(s) | 21 |
| AoxI | GGCC | 3 cut(s) | 141, 219, 336 |
| ApeKI | GCWGC | 5 cut(s) | 16, 205, 250, 332, 364 |
| AspLEI | GCGC | 1 cut(s) | 332 |
| AspS9I | GGNCC | 1 cut(s) | 49 |
| AsuC2I | CCSGG | 2 cut(s) | 22, 23 |
| AsuHPI | GGTGA | 4 cut(s) | 292, 308, 406, 422 |
| AsuNHI | GCTAGC | 2 cut(s) | 271, 385 |
| AvaI | CYCGRG | 1 cut(s) | 21 |
| AvaII | GGWCC | 1 cut(s) | 49 |
| BanI | GGYRCC | 1 cut(s) | 87 |
| BanII | GRGCYC | 1 cut(s) | 39 |
| BbsI | GAAGAC | 1 cut(s) | 50 |
| Bbv12I | GWGCWC | 1 cut(s) | 39 |
| BbvI | GCAGC | 5 cut(s) | 28, 192, 262, 319, 376 |
| BceAI | ACGGC | 1 cut(s) | 128 |
| BciT130I | CCWGG | 3 cut(s) | 53, 268, 382 |
| BclI | TGATCA | 1 cut(s) | 169 |
| BcnI | CCSGG | 2 cut(s) | 22, 23 |
| BcoDI | GTCTC | 1 cut(s) | 181 |
| BfaI | CTAG | 2 cut(s) | 272, 386 |
| BfmI | CTRYAG | 3 cut(s) | 206, 248, 362 |
| Bme1390I | CCNGG | 5 cut(s) | 22, 23, 53, 268, 382 |
| Bme18I | GGWCC | 1 cut(s) | 49 |
| BmeT110I | CYCGRG | 1 cut(s) | 21 |
| BmgT120I | GGNCC | 1 cut(s) | 49 |
| BmiI | GGNNCC | 1 cut(s) | 89 |
| BmrFI | CCNGG | 5 cut(s) | 22, 23, 53, 268, 382 |
| BmsI | GCATC | 2 cut(s) | 100, 109 |
| BmtI | GCTAGC | 2 cut(s) | 275, 389 |
| BpiI | GAAGAC | 1 cut(s) | 50 |
| BpmI | CTGGAG | 2 cut(s) | 311, 425 |
| Bpu10I | CCTNAGC | 1 cut(s) | 38 |
| BpuMI | CCSGG | 2 cut(s) | 22, 23 |
| BsaBI | GATNNNNATC | 2 cut(s) | 242, 356 |
| BsaHI | GRCGYC | 1 cut(s) | 8 |
| BsaJI | CCNNGG | 8 cut(s) | 20, 21, 52, 124, 225, 276, 339, 390 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 97, 150, 208, 253, 267, 334, 367, 381 |
| Bse8I | GATNNNNATC | 2 cut(s) | 242, 356 |
| BseBI | CCWGG | 3 cut(s) | 53, 268, 382 |
| BseDI | CCNNGG | 8 cut(s) | 20, 21, 52, 124, 225, 276, 339, 390 |
| BseJI | GATNNNNATC | 2 cut(s) | 242, 356 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 97, 150, 208, 253, 267, 334, 367, 381 |
| BseMII | CTCAG | 3 cut(s) | 52, 302, 416 |
| BseRI | GAGGAG | 1 cut(s) | 59 |
| BseXI | GCAGC | 5 cut(s) | 28, 192, 262, 319, 376 |
| Bsh1236I | CGCG | 2 cut(s) | 126, 330 |
| BshFI | GGCC | 3 cut(s) | 143, 221, 338 |
| BshNI | GGYRCC | 1 cut(s) | 87 |
| BsiHKAI | GWGCWC | 1 cut(s) | 39 |
| BsiHKCI | CYCGRG | 1 cut(s) | 21 |
| BsiSI | CCGG | 1 cut(s) | 22 |
| BslFI | GGGAC | 3 cut(s) | 167, 184, 225 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 97, 150, 208, 253, 267, 334, 367, 381 |
| BsmAI | GTCTC | 1 cut(s) | 181 |
| BsmFI | GGGAC | 3 cut(s) | 167, 184, 225 |
| BsnI | GGCC | 3 cut(s) | 143, 221, 338 |
| BsoBI | CYCGRG | 1 cut(s) | 21 |
| Bsp1286I | GDGCHC | 1 cut(s) | 39 |
| Bsp143I | GATC | 1 cut(s) | 169 |
| BspANI | GGCC | 3 cut(s) | 143, 221, 338 |
| BspCNI | CTCAG | 3 cut(s) | 51, 303, 417 |
| BspFNI | CGCG | 2 cut(s) | 126, 330 |
| BspLI | GGNNCC | 1 cut(s) | 89 |
| BspMAI | CTGCAG | 3 cut(s) | 210, 252, 366 |
| BspOI | GCTAGC | 2 cut(s) | 275, 389 |
| BspT107I | GGYRCC | 1 cut(s) | 87 |
| BsrBI | CCGCTC | 2 cut(s) | 31, 163 |
| BssECI | CCNNGG | 8 cut(s) | 20, 21, 52, 124, 225, 276, 339, 390 |
| BssMI | GATC | 1 cut(s) | 169 |
| BssNI | GRCGYC | 1 cut(s) | 8 |
| BssT1I | CCWWGG | 2 cut(s) | 225, 339 |
| Bst2UI | CCWGG | 3 cut(s) | 53, 268, 382 |
| Bst4CI | ACNGT | 1 cut(s) | 87 |
| Bst6I | CTCTTC | 2 cut(s) | 315, 429 |
| BstACI | GRCGYC | 1 cut(s) | 8 |
| BstC8I | GCNNGC | 7 cut(s) | 72, 124, 131, 135, 273, 387, 421 |
| BstDEI | CTNAG | 3 cut(s) | 38, 311, 425 |
| BstDSI | CCRYGG | 1 cut(s) | 124 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 95, 206 |
| BstFNI | CGCG | 2 cut(s) | 126, 330 |
| BstHHI | GCGC | 1 cut(s) | 332 |
| BstKTI | GATC | 1 cut(s) | 172 |
| BstMAI | GTCTC | 1 cut(s) | 181 |
| BstMBI | GATC | 1 cut(s) | 169 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 119, 272, 386 |
| BstNI | CCWGG | 3 cut(s) | 53, 268, 382 |
| BstNSI | RCATGY | 1 cut(s) | 199 |
| BstSCI | CCNGG | 5 cut(s) | 20, 21, 51, 266, 380 |
| BstSFI | CTRYAG | 3 cut(s) | 206, 248, 362 |
| BstUI | CGCG | 2 cut(s) | 126, 330 |
| BstV1I | GCAGC | 5 cut(s) | 28, 192, 262, 319, 376 |
| BstV2I | GAAGAC | 1 cut(s) | 50 |
| BsuRI | GGCC | 3 cut(s) | 143, 221, 338 |
| BtgI | CCRYGG | 1 cut(s) | 124 |
| Cac8I | GCNNGC | 7 cut(s) | 72, 124, 131, 135, 273, 387, 421 |
| CfoI | GCGC | 1 cut(s) | 332 |
| Cfr13I | GGNCC | 1 cut(s) | 49 |
| Cfr42I | CCGCGG | 1 cut(s) | 127 |
| Cfr9I | CCCGGG | 1 cut(s) | 21 |
| CviAII | CATG | 2 cut(s) | 173, 196 |
| DdeI | CTNAG | 3 cut(s) | 38, 311, 425 |
| DpnI | GATC | 1 cut(s) | 171 |
| DpnII | GATC | 1 cut(s) | 169 |
| EaeI | YGGCCR | 3 cut(s) | 141, 219, 336 |
| Eam1104I | CTCTTC | 2 cut(s) | 315, 429 |
| EarI | CTCTTC | 2 cut(s) | 315, 429 |
| EciI | GGCGGA | 4 cut(s) | 89, 116, 250, 364 |
| Ecl136II | GAGCTC | 1 cut(s) | 37 |
| Eco130I | CCWWGG | 2 cut(s) | 225, 339 |
| Eco24I | GRGCYC | 1 cut(s) | 39 |
| Eco32I | GATATC | 2 cut(s) | 244, 358 |
| Eco47I | GGWCC | 1 cut(s) | 49 |
| Eco53kI | GAGCTC | 1 cut(s) | 37 |
| Eco57I | CTGAAG | 1 cut(s) | 44 |
| Eco88I | CYCGRG | 1 cut(s) | 21 |
| EcoICRI | GAGCTC | 1 cut(s) | 37 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 95, 206 |
| EcoRII | CCWGG | 3 cut(s) | 51, 266, 380 |
| EcoRV | GATATC | 2 cut(s) | 244, 358 |
| EcoT14I | CCWWGG | 2 cut(s) | 225, 339 |
| EcoT38I | GRGCYC | 1 cut(s) | 39 |
| ErhI | CCWWGG | 2 cut(s) | 225, 339 |
| FaeI | CATG | 2 cut(s) | 176, 199 |
| FaiI | YATR | 2 cut(s) | 174, 197 |
| FaqI | GGGAC | 3 cut(s) | 167, 184, 225 |
| FatI | CATG | 2 cut(s) | 172, 195 |
| FauI | CCCGC | 6 cut(s) | 24, 131, 144, 246, 360, 428 |
| FbaI | TGATCA | 1 cut(s) | 169 |
| FriOI | GRGCYC | 1 cut(s) | 39 |
| FspBI | CTAG | 2 cut(s) | 272, 386 |
| GlaI | GCGC | 1 cut(s) | 331 |
| GsuI | CTGGAG | 2 cut(s) | 311, 425 |
| HaeIII | GGCC | 3 cut(s) | 143, 221, 338 |
| HapII | CCGG | 1 cut(s) | 22 |
| HhaI | GCGC | 1 cut(s) | 332 |
| Hin1I | GRCGYC | 1 cut(s) | 8 |
| Hin1II | CATG | 2 cut(s) | 176, 199 |
| Hin6I | GCGC | 1 cut(s) | 330 |
| HinP1I | GCGC | 1 cut(s) | 330 |
| HinfI | GANTC | 2 cut(s) | 257, 371 |
| HpaII | CCGG | 1 cut(s) | 22 |
| HphI | GGTGA | 4 cut(s) | 292, 308, 406, 422 |
| Hpy188I | TCNGA | 1 cut(s) | 63 |
| Hpy99I | CGWCG | 1 cut(s) | 13 |
| HpyCH4III | ACNGT | 1 cut(s) | 87 |
| HpyCH4V | TGCA | 3 cut(s) | 208, 250, 364 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 119, 272, 386 |
| HpyF3I | CTNAG | 3 cut(s) | 38, 311, 425 |
| Hsp92I | GRCGYC | 1 cut(s) | 8 |
| Hsp92II | CATG | 2 cut(s) | 176, 199 |
| HspAI | GCGC | 1 cut(s) | 330 |
| Ksp22I | TGATCA | 1 cut(s) | 169 |
| KspI | CCGCGG | 1 cut(s) | 127 |
| Kzo9I | GATC | 1 cut(s) | 169 |
| LmnI | GCTCC | 3 cut(s) | 34, 160, 187 |
| Lsp1109I | GCAGC | 5 cut(s) | 28, 192, 262, 319, 376 |
| LweI | GCATC | 2 cut(s) | 100, 109 |
| MaeI | CTAG | 2 cut(s) | 272, 386 |
| MalI | GATC | 1 cut(s) | 171 |
| MbiI | CCGCTC | 2 cut(s) | 31, 163 |
| MboI | GATC | 1 cut(s) | 169 |
| MboII | GAAGA | 7 cut(s) | 50, 247, 295, 332, 361, 409, 446 |
| MhlI | GDGCHC | 1 cut(s) | 39 |
| MlyI | GAGTC | 2 cut(s) | 266, 380 |
| MmeI | TCCRAC | 1 cut(s) | 165 |
| MnlI | CCTC | 8 cut(s) | 37, 40, 271, 286, 292, 385, 400, 406 |
| MspA1I | CMGCKG | 6 cut(s) | 116, 126, 151, 253, 367, 444 |
| MspI | CCGG | 1 cut(s) | 22 |
| MspR9I | CCNGG | 5 cut(s) | 22, 23, 53, 268, 382 |
| MvaI | CCWGG | 3 cut(s) | 53, 268, 382 |
| MvnI | CGCG | 2 cut(s) | 126, 330 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 119, 272, 386 |
| NciI | CCSGG | 2 cut(s) | 22, 23 |
| NdeII | GATC | 1 cut(s) | 169 |
| NheI | GCTAGC | 2 cut(s) | 271, 385 |
| NlaIII | CATG | 2 cut(s) | 176, 199 |
| NlaIV | GGNNCC | 1 cut(s) | 89 |
| NmeAIII | GCCGAG | 2 cut(s) | 301, 415 |
| NspI | RCATGY | 1 cut(s) | 199 |
| PciI | ACATGT | 1 cut(s) | 195 |
| PleI | GAGTC | 2 cut(s) | 265, 379 |
| PpsI | GAGTC | 2 cut(s) | 265, 379 |
| PscI | ACATGT | 1 cut(s) | 195 |
| Psp124BI | GAGCTC | 1 cut(s) | 39 |
| Psp6I | CCWGG | 3 cut(s) | 51, 266, 380 |
| PspGI | CCWGG | 3 cut(s) | 51, 266, 380 |
| PspN4I | GGNNCC | 1 cut(s) | 89 |
| PspPI | GGNCC | 1 cut(s) | 49 |
| PstI | CTGCAG | 3 cut(s) | 210, 252, 366 |
| SacI | GAGCTC | 1 cut(s) | 39 |
| SacII | CCGCGG | 1 cut(s) | 127 |
| Sau3AI | GATC | 1 cut(s) | 169 |
| Sau96I | GGNCC | 1 cut(s) | 49 |
| SchI | GAGTC | 2 cut(s) | 266, 380 |
| ScrFI | CCNGG | 5 cut(s) | 22, 23, 53, 268, 382 |
| SduI | GDGCHC | 1 cut(s) | 39 |
| SfaNI | GCATC | 2 cut(s) | 100, 109 |
| SfcI | CTRYAG | 3 cut(s) | 206, 248, 362 |
| Sfr303I | CCGCGG | 1 cut(s) | 127 |
| SgrBI | CCGCGG | 1 cut(s) | 127 |
| SinI | GGWCC | 1 cut(s) | 49 |
| SmaI | CCCGGG | 1 cut(s) | 23 |
| SspMI | CTAG | 2 cut(s) | 272, 386 |
| SstI | GAGCTC | 1 cut(s) | 39 |
| StyD4I | CCNGG | 5 cut(s) | 20, 21, 51, 266, 380 |
| StyI | CCWWGG | 2 cut(s) | 225, 339 |
| TaaI | ACNGT | 1 cut(s) | 87 |
| TaqI | TCGA | 1 cut(s) | 11 |
| TauI | GCSGC | 9 cut(s) | 8, 116, 129, 224, 266, 330, 338, 380, 444 |
| TseI | GCWGC | 5 cut(s) | 16, 205, 250, 332, 364 |
| TspMI | CCCGGG | 1 cut(s) | 21 |
| VpaK11BI | GGWCC | 1 cut(s) | 49 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 95, 206 |
| XceI | RCATGY | 1 cut(s) | 199 |
| XmaI | CCCGGG | 1 cut(s) | 21 |
| XspI | CTAG | 2 cut(s) | 272, 386 |