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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 287 |
| Acc16I | TGCGCA | 1 cut(s) | 283 |
| Acc36I | ACCTGC | 1 cut(s) | 287 |
| AccBSI | CCGCTC | 2 cut(s) | 174, 192 |
| AccI | GTMKAC | 1 cut(s) | 162 |
| AciI | CCGC | 9 cut(s) | 31, 49, 60, 135, 172, 192, 206, 269, 387 |
| AcyI | GRCGYC | 1 cut(s) | 95 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 325, 337 |
| AgsI | TTSAA | 1 cut(s) | 79 |
| AleI | CACNNNNGTG | 1 cut(s) | 296 |
| Alw26I | GTCTC | 1 cut(s) | 365 |
| AoxI | GGCC | 1 cut(s) | 301 |
| ApeKI | GCWGC | 1 cut(s) | 62 |
| AspLEI | GCGC | 1 cut(s) | 284 |
| AspS9I | GGNCC | 2 cut(s) | 301, 328 |
| AsuHPI | GGTGA | 2 cut(s) | 206, 410 |
| AvaII | GGWCC | 1 cut(s) | 328 |
| BbvI | GCAGC | 1 cut(s) | 49 |
| BccI | CCATC | 2 cut(s) | 281, 289 |
| BceAI | ACGGC | 3 cut(s) | 97, 126, 338 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 326, 360 |
| BcoDI | GTCTC | 1 cut(s) | 365 |
| BfaI | CTAG | 1 cut(s) | 384 |
| BfmI | CTRYAG | 1 cut(s) | 63 |
| BfuAI | ACCTGC | 1 cut(s) | 287 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 118 |
| BisI | GCNGC | 3 cut(s) | 49, 63, 270 |
| BlpI | GCTNAGC | 1 cut(s) | 108 |
| BlsI | GCNGC | 3 cut(s) | 50, 64, 271 |
| Bme18I | GGWCC | 1 cut(s) | 328 |
| BmgT120I | GGNCC | 2 cut(s) | 301, 328 |
| BmiI | GGNNCC | 3 cut(s) | 47, 150, 330 |
| BmsI | GCATC | 1 cut(s) | 334 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 115, 147 |
| Bpu10I | CCTNAGC | 1 cut(s) | 175 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 108 |
| BsaHI | GRCGYC | 1 cut(s) | 95 |
| BsaI | GGTCTC | 1 cut(s) | 365 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 325, 337 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 325, 337 |
| BseMII | CTCAG | 2 cut(s) | 99, 189 |
| BseRI | GAGGAG | 3 cut(s) | 86, 216, 308 |
| BseXI | GCAGC | 1 cut(s) | 49 |
| BseYI | CCCAGC | 1 cut(s) | 27 |
| BsgI | GTGCAG | 1 cut(s) | 276 |
| BshFI | GGCC | 1 cut(s) | 303 |
| BsiSI | CCGG | 1 cut(s) | 203 |
| BslFI | GGGAC | 2 cut(s) | 82, 314 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 325, 337 |
| BsmAI | GTCTC | 1 cut(s) | 365 |
| BsmFI | GGGAC | 2 cut(s) | 82, 314 |
| BsnI | GGCC | 1 cut(s) | 303 |
| Bso31I | GGTCTC | 1 cut(s) | 365 |
| Bsp143I | GATC | 1 cut(s) | 196 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 108 |
| BspACI | CCGC | 9 cut(s) | 31, 49, 60, 135, 172, 192, 206, 269, 387 |
| BspANI | GGCC | 1 cut(s) | 303 |
| BspCNI | CTCAG | 2 cut(s) | 100, 188 |
| BspLI | GGNNCC | 3 cut(s) | 47, 150, 330 |
| BspMAI | CTGCAG | 1 cut(s) | 67 |
| BspMI | ACCTGC | 1 cut(s) | 287 |
| BspTNI | GGTCTC | 1 cut(s) | 365 |
| BsrBI | CCGCTC | 2 cut(s) | 174, 192 |
| BssMI | GATC | 1 cut(s) | 196 |
| BssNI | GRCGYC | 1 cut(s) | 95 |
| Bst4CI | ACNGT | 2 cut(s) | 167, 215 |
| Bst6I | CTCTTC | 1 cut(s) | 30 |
| BstACI | GRCGYC | 1 cut(s) | 95 |
| BstC8I | GCNNGC | 1 cut(s) | 139 |
| BstDEI | CTNAG | 2 cut(s) | 108, 175 |
| BstEII | GGTNACC | 1 cut(s) | 398 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 323 |
| BstHHI | GCGC | 1 cut(s) | 284 |
| BstKTI | GATC | 1 cut(s) | 199 |
| BstMAI | GTCTC | 1 cut(s) | 365 |
| BstMBI | GATC | 1 cut(s) | 196 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 118, 288 |
| BstPI | GGTNACC | 1 cut(s) | 398 |
| BstSFI | CTRYAG | 1 cut(s) | 63 |
| BstV1I | GCAGC | 1 cut(s) | 49 |
| BsuRI | GGCC | 1 cut(s) | 303 |
| BtsI | GCAGTG | 1 cut(s) | 72 |
| BtsIMutI | CAGTG | 1 cut(s) | 72 |
| BveI | ACCTGC | 1 cut(s) | 287 |
| Cac8I | GCNNGC | 1 cut(s) | 139 |
| CfoI | GCGC | 1 cut(s) | 284 |
| Cfr13I | GGNCC | 2 cut(s) | 301, 328 |
| CseI | GACGC | 1 cut(s) | 84 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 126, 161 |
| CviAII | CATG | 2 cut(s) | 52, 265 |
| CviJI | RGCY | 6 cut(s) | 48, 112, 141, 272, 303, 374 |
| CviKI_1 | RGCY | 6 cut(s) | 48, 112, 141, 272, 303, 374 |
| DdeI | CTNAG | 2 cut(s) | 108, 175 |
| DpnI | GATC | 1 cut(s) | 198 |
| DpnII | GATC | 1 cut(s) | 196 |
| Eam1104I | CTCTTC | 1 cut(s) | 30 |
| EarI | CTCTTC | 1 cut(s) | 30 |
| Eco31I | GGTCTC | 1 cut(s) | 365 |
| Eco47I | GGWCC | 1 cut(s) | 328 |
| Eco91I | GGTNACC | 1 cut(s) | 398 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 323 |
| EcoO109I | RGGNCCY | 1 cut(s) | 328 |
| EcoO65I | GGTNACC | 1 cut(s) | 398 |
| FaeI | CATG | 2 cut(s) | 55, 268 |
| FaiI | YATR | 2 cut(s) | 53, 266 |
| FaqI | GGGAC | 2 cut(s) | 82, 314 |
| FatI | CATG | 2 cut(s) | 51, 264 |
| FauI | CCCGC | 2 cut(s) | 24, 142 |
| FblI | GTMKAC | 1 cut(s) | 162 |
| Fnu4HI | GCNGC | 3 cut(s) | 49, 63, 270 |
| Fsp4HI | GCNGC | 3 cut(s) | 49, 63, 270 |
| FspBI | CTAG | 1 cut(s) | 384 |
| FspI | TGCGCA | 1 cut(s) | 283 |
| GlaI | GCGC | 1 cut(s) | 283 |
| GluI | GCNGC | 3 cut(s) | 49, 63, 270 |
| GsaI | CCCAGC | 1 cut(s) | 31 |
| HaeIII | GGCC | 1 cut(s) | 303 |
| HapII | CCGG | 1 cut(s) | 203 |
| HgaI | GACGC | 1 cut(s) | 84 |
| HhaI | GCGC | 1 cut(s) | 284 |
| Hin1I | GRCGYC | 1 cut(s) | 95 |
| Hin1II | CATG | 2 cut(s) | 55, 268 |
| Hin6I | GCGC | 1 cut(s) | 282 |
| HinP1I | GCGC | 1 cut(s) | 282 |
| HincII | GTYRAC | 1 cut(s) | 163 |
| HindII | GTYRAC | 1 cut(s) | 163 |
| HinfI | GANTC | 3 cut(s) | 56, 128, 223 |
| HpaII | CCGG | 1 cut(s) | 203 |
| HphI | GGTGA | 2 cut(s) | 206, 410 |
| Hpy166II | GTNNAC | 2 cut(s) | 163, 211 |
| Hpy188I | TCNGA | 1 cut(s) | 365 |
| Hpy188III | TCNNGA | 1 cut(s) | 177 |
| Hpy8I | GTNNAC | 2 cut(s) | 163, 211 |
| Hpy99I | CGWCG | 2 cut(s) | 167, 326 |
| HpyCH4III | ACNGT | 2 cut(s) | 167, 215 |
| HpyCH4V | TGCA | 3 cut(s) | 65, 220, 257 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 118, 288 |
| HpyF3I | CTNAG | 2 cut(s) | 108, 175 |
| Hsp92I | GRCGYC | 1 cut(s) | 95 |
| Hsp92II | CATG | 2 cut(s) | 55, 268 |
| HspAI | GCGC | 1 cut(s) | 282 |
| Kzo9I | GATC | 1 cut(s) | 196 |
| LmnI | GCTCC | 1 cut(s) | 45 |
| LpnPI | CCDG | 6 cut(s) | 41, 102, 162, 216, 292, 345 |
| Lsp1109I | GCAGC | 1 cut(s) | 49 |
| LweI | GCATC | 1 cut(s) | 334 |
| MaeI | CTAG | 1 cut(s) | 384 |
| MaeIII | GTNAC | 1 cut(s) | 398 |
| MalI | GATC | 1 cut(s) | 198 |
| MbiI | CCGCTC | 2 cut(s) | 174, 192 |
| MboI | GATC | 1 cut(s) | 196 |
| MboII | GAAGA | 1 cut(s) | 47 |
| MluCI | AATT | 1 cut(s) | 239 |
| MlyI | GAGTC | 2 cut(s) | 65, 217 |
| MslI | CAYNNNNRTG | 1 cut(s) | 296 |
| MspA1I | CMGCKG | 2 cut(s) | 31, 62 |
| MspI | CCGG | 1 cut(s) | 203 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 118, 288 |
| NdeII | GATC | 1 cut(s) | 196 |
| NlaIII | CATG | 2 cut(s) | 55, 268 |
| NlaIV | GGNNCC | 3 cut(s) | 47, 150, 330 |
| NmuCI | GTSAC | 1 cut(s) | 398 |
| NsbI | TGCGCA | 1 cut(s) | 283 |
| OliI | CACNNNNGTG | 1 cut(s) | 296 |
| PaqCI | CACCTGC | 1 cut(s) | 287 |
| PfeI | GAWTC | 1 cut(s) | 128 |
| PflFI | GACNNNGTC | 2 cut(s) | 167, 326 |
| PkrI | GCNGC | 3 cut(s) | 50, 64, 271 |
| PleI | GAGTC | 2 cut(s) | 64, 217 |
| PpsI | GAGTC | 2 cut(s) | 64, 217 |
| PpuMI | RGGWCCY | 1 cut(s) | 328 |
| Psp5II | RGGWCCY | 1 cut(s) | 328 |
| PspEI | GGTNACC | 1 cut(s) | 398 |
| PspFI | CCCAGC | 1 cut(s) | 27 |
| PspN4I | GGNNCC | 3 cut(s) | 47, 150, 330 |
| PspPI | GGNCC | 2 cut(s) | 301, 328 |
| PspPPI | RGGWCCY | 1 cut(s) | 328 |
| PstI | CTGCAG | 1 cut(s) | 67 |
| PsyI | GACNNNGTC | 2 cut(s) | 167, 326 |
| RseI | CAYNNNNRTG | 1 cut(s) | 296 |
| SalI | GTCGAC | 1 cut(s) | 161 |
| SatI | GCNGC | 3 cut(s) | 49, 63, 270 |
| Sau3AI | GATC | 1 cut(s) | 196 |
| Sau96I | GGNCC | 2 cut(s) | 301, 328 |
| SchI | GAGTC | 2 cut(s) | 65, 217 |
| SetI | ASST | 6 cut(s) | 24, 281, 330, 342, 395, 405 |
| SfaNI | GCATC | 1 cut(s) | 334 |
| SfcI | CTRYAG | 1 cut(s) | 63 |
| SinI | GGWCC | 1 cut(s) | 328 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 296 |
| Sse9I | AATT | 1 cut(s) | 239 |
| SsiI | CCGC | 9 cut(s) | 31, 49, 60, 135, 172, 192, 206, 269, 387 |
| SspMI | CTAG | 1 cut(s) | 384 |
| TaaI | ACNGT | 2 cut(s) | 167, 215 |
| TaqI | TCGA | 3 cut(s) | 162, 321, 336 |
| TasI | AATT | 1 cut(s) | 239 |
| TauI | GCSGC | 2 cut(s) | 51, 272 |
| TfiI | GAWTC | 1 cut(s) | 128 |
| TscAI | CASTG | 1 cut(s) | 72 |
| TseFI | GTSAC | 1 cut(s) | 398 |
| TseI | GCWGC | 1 cut(s) | 62 |
| Tsp45I | GTSAC | 1 cut(s) | 398 |
| TspDTI | ATGAA | 2 cut(s) | 17, 253 |
| TspRI | CASTG | 1 cut(s) | 72 |
| Tth111I | GACNNNGTC | 2 cut(s) | 167, 326 |
| VpaK11BI | GGWCC | 1 cut(s) | 328 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 323 |
| XmiI | GTMKAC | 1 cut(s) | 162 |
| XspI | CTAG | 1 cut(s) | 384 |