Zinc finger, ZZ type
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 228 |
| AccB1I | GGYRCC | 5 cut(s) | 416, 604, 2090, 2126, 2219 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 669, 2136 |
| AccBSI | CCGCTC | 2 cut(s) | 1681, 1834 |
| AccI | GTMKAC | 1 cut(s) | 222 |
| AccII | CGCG | 8 cut(s) | 278, 906, 1049, 1170, 1190, 1219, 1319, 1396 |
| AccIII | TCCGGA | 1 cut(s) | 254 |
| AclWI | GGATC | 5 cut(s) | 265, 532, 993, 1127, 1140 |
| AcoI | YGGCCR | 5 cut(s) | 316, 550, 1207, 1806, 1890 |
| AcsI | RAATTY | 1 cut(s) | 289 |
| AcuI | CTGAAG | 4 cut(s) | 282, 599, 1588, 1904 |
| AcyI | GRCGYC | 3 cut(s) | 225, 1041, 1658 |
| AfeI | AGCGCT | 2 cut(s) | 687, 1987 |
| AflIII | ACRYGT | 1 cut(s) | 666 |
| AgsI | TTSAA | 6 cut(s) | 1010, 1294, 1852, 1913, 2190, 2216 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 2352 |
| AhlI | ACTAGT | 1 cut(s) | 32 |
| AjiI | CACGTC | 1 cut(s) | 1624 |
| AjnI | CCWGG | 3 cut(s) | 1560, 1650, 1821 |
| AleI | CACNNNNGTG | 1 cut(s) | 1320 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1506, 1538 |
| AluBI | AGCT | 7 cut(s) | 24, 182, 505, 548, 1150, 1804, 2388 |
| AluI | AGCT | 7 cut(s) | 24, 182, 505, 548, 1150, 1804, 2388 |
| Alw21I | GWGCWC | 1 cut(s) | 26 |
| Alw26I | GTCTC | 3 cut(s) | 1133, 1875, 2339 |
| AlwI | GGATC | 5 cut(s) | 265, 532, 993, 1127, 1140 |
| Ama87I | CYCGRG | 4 cut(s) | 1157, 1427, 2325, 2364 |
| Aor13HI | TCCGGA | 1 cut(s) | 254 |
| Aor51HI | AGCGCT | 2 cut(s) | 687, 1987 |
| ApaI | GGGCCC | 1 cut(s) | 1394 |
| ApeKI | GCWGC | 7 cut(s) | 505, 679, 1400, 1994, 2113, 2116, 2385 |
| ApoI | RAATTY | 1 cut(s) | 289 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1325, 1357 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1917 |
| AspLEI | GCGC | 8 cut(s) | 278, 688, 774, 820, 1170, 1205, 1219, 1988 |
| AspS9I | GGNCC | 7 cut(s) | 722, 1060, 1162, 1390, 1391, 1705, 1729 |
| AsuC2I | CCSGG | 6 cut(s) | 492, 1158, 1159, 2255, 2326, 2327 |
| AsuHPI | GGTGA | 7 cut(s) | 511, 950, 1177, 1184, 1250, 1523, 1979 |
| AsuNHI | GCTAGC | 2 cut(s) | 682, 2167 |
| AvaI | CYCGRG | 4 cut(s) | 1157, 1427, 2325, 2364 |
| AvaII | GGWCC | 3 cut(s) | 722, 1060, 1162 |
| AxyI | CCTNAGG | 1 cut(s) | 839 |
| BaeGI | GKGCMC | 2 cut(s) | 1394, 1623 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 731, 764 |
| BalI | TGGCCA | 1 cut(s) | 552 |
| BamHI | GGATCC | 1 cut(s) | 1132 |
| BanI | GGYRCC | 5 cut(s) | 416, 604, 2090, 2126, 2219 |
| BanII | GRGCYC | 3 cut(s) | 26, 1157, 1394 |
| BauI | CACGAG | 3 cut(s) | 888, 999, 1794 |
| BbsI | GAAGAC | 1 cut(s) | 1127 |
| Bbv12I | GWGCWC | 1 cut(s) | 26 |
| BbvCI | CCTCAGC | 2 cut(s) | 1947, 1989 |
| BbvI | GCAGC | 7 cut(s) | 492, 666, 1412, 2006, 2100, 2128, 2397 |
| BccI | CCATC | 5 cut(s) | 153, 211, 2102, 2138, 2327 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1763, 1797 |
| BciT130I | CCWGG | 3 cut(s) | 1562, 1652, 1823 |
| BciVI | GTATCC | 1 cut(s) | 379 |
| BcnI | CCSGG | 6 cut(s) | 492, 1158, 1159, 2255, 2326, 2327 |
| BcoDI | GTCTC | 3 cut(s) | 1133, 1875, 2339 |
| BcuI | ACTAGT | 1 cut(s) | 32 |
| BfaI | CTAG | 9 cut(s) | 33, 146, 156, 189, 347, 374, 683, 1472, 2168 |
| BfmI | CTRYAG | 3 cut(s) | 743, 1326, 2114 |
| BfoI | RGCGCY | 5 cut(s) | 689, 775, 821, 1206, 1989 |
| BfuI | GTATCC | 1 cut(s) | 379 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1943 |
| BglII | AGATCT | 2 cut(s) | 370, 618 |
| BlpI | GCTNAGC | 1 cut(s) | 1151 |
| Bme1390I | CCNGG | 9 cut(s) | 492, 1158, 1159, 1562, 1652, 1823, 2255, 2326, 2327 |
| Bme18I | GGWCC | 3 cut(s) | 722, 1060, 1162 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 2352 |
| BmeT110I | CYCGRG | 4 cut(s) | 1157, 1427, 2325, 2364 |
| BmgBI | CACGTC | 1 cut(s) | 1624 |
| BmgT120I | GGNCC | 7 cut(s) | 722, 1060, 1162, 1390, 1391, 1705, 1729 |
| BmrFI | CCNGG | 9 cut(s) | 492, 1158, 1159, 1562, 1652, 1823, 2255, 2326, 2327 |
| BmrI | ACTGGG | 4 cut(s) | 1396, 2146, 2278, 2346 |
| BmsI | GCATC | 5 cut(s) | 316, 924, 1771, 2142, 2156 |
| BmtI | GCTAGC | 2 cut(s) | 686, 2171 |
| BmuI | ACTGGG | 4 cut(s) | 1396, 2146, 2278, 2346 |
| BoxI | GACNNNNGTC | 1 cut(s) | 954 |
| BpiI | GAAGAC | 1 cut(s) | 1127 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 518, 550, 2249, 2281 |
| BpmI | CTGGAG | 3 cut(s) | 1166, 1337, 1982 |
| Bpu10I | CCTNAGC | 3 cut(s) | 1947, 1982, 1989 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1151 |
| BpuMI | CCSGG | 6 cut(s) | 492, 1158, 1159, 2255, 2326, 2327 |
| Bsa29I | ATCGAT | 1 cut(s) | 2150 |
| BsaHI | GRCGYC | 3 cut(s) | 225, 1041, 1658 |
| BsaI | GGTCTC | 1 cut(s) | 2339 |
| BsaWI | WCCGGW | 2 cut(s) | 254, 710 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1079, 1109, 1511, 1541 |
| Bse118I | RCCGGY | 5 cut(s) | 465, 1164, 1205, 2087, 2155 |
| Bse1I | ACTGG | 8 cut(s) | 762, 863, 1104, 1391, 2141, 2284, 2316, 2352 |
| Bse21I | CCTNAGG | 1 cut(s) | 839 |
| Bse3DI | GCAATG | 4 cut(s) | 639, 1243, 2016, 2073 |
| BseAI | TCCGGA | 1 cut(s) | 254 |
| BseBI | CCWGG | 3 cut(s) | 1562, 1652, 1823 |
| BseCI | ATCGAT | 1 cut(s) | 2150 |
| BseGI | GGATG | 6 cut(s) | 222, 307, 450, 1376, 2338, 2392 |
| BseMI | GCAATG | 4 cut(s) | 639, 1243, 2016, 2073 |
| BseNI | ACTGG | 8 cut(s) | 762, 863, 1104, 1391, 2141, 2284, 2316, 2352 |
| BseRI | GAGGAG | 3 cut(s) | 539, 1380, 1709 |
| BseSI | GKGCMC | 2 cut(s) | 1394, 1623 |
| BseXI | GCAGC | 7 cut(s) | 492, 666, 1412, 2006, 2100, 2128, 2397 |
| BseYI | CCCAGC | 4 cut(s) | 360, 969, 1244, 2303 |
| Bsh1236I | CGCG | 8 cut(s) | 278, 906, 1049, 1170, 1190, 1219, 1319, 1396 |
| BshNI | GGYRCC | 5 cut(s) | 416, 604, 2090, 2126, 2219 |
| BshVI | ATCGAT | 1 cut(s) | 2150 |
| BsiHKAI | GWGCWC | 1 cut(s) | 26 |
| BsiHKCI | CYCGRG | 4 cut(s) | 1157, 1427, 2325, 2364 |
| BslFI | GGGAC | 4 cut(s) | 1175, 1730, 2281, 2340 |
| BsmAI | GTCTC | 3 cut(s) | 1133, 1875, 2339 |
| BsmBI | CGTCTC | 1 cut(s) | 1133 |
| BsmFI | GGGAC | 4 cut(s) | 1175, 1730, 2281, 2340 |
| Bso31I | GGTCTC | 1 cut(s) | 2339 |
| BsoBI | CYCGRG | 4 cut(s) | 1157, 1427, 2325, 2364 |
| Bsp120I | GGGCCC | 1 cut(s) | 1390 |
| Bsp1286I | GDGCHC | 4 cut(s) | 26, 1157, 1394, 1623 |
| Bsp13I | TCCGGA | 1 cut(s) | 254 |
| Bsp143I | GATC | 7 cut(s) | 257, 370, 537, 618, 985, 1071, 1132 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1151 |
| Bsp19I | CCATGG | 4 cut(s) | 729, 775, 1056, 2031 |
| Bsp68I | TCGCGA | 1 cut(s) | 1049 |
| BspDI | ATCGAT | 1 cut(s) | 2150 |
| BspEI | TCCGGA | 1 cut(s) | 254 |
| BspFNI | CGCG | 8 cut(s) | 278, 906, 1049, 1170, 1190, 1219, 1319, 1396 |
| BspMAI | CTGCAG | 2 cut(s) | 747, 2118 |
| BspOI | GCTAGC | 2 cut(s) | 686, 2171 |
| BspPI | GGATC | 5 cut(s) | 265, 532, 993, 1127, 1140 |
| BspT107I | GGYRCC | 5 cut(s) | 416, 604, 2090, 2126, 2219 |
| BspTNI | GGTCTC | 1 cut(s) | 2339 |
| BsrBI | CCGCTC | 2 cut(s) | 1681, 1834 |
| BsrDI | GCAATG | 4 cut(s) | 639, 1243, 2016, 2073 |
| BsrFI | RCCGGY | 5 cut(s) | 465, 1164, 1205, 2087, 2155 |
| BsrI | ACTGG | 8 cut(s) | 762, 863, 1104, 1391, 2141, 2284, 2316, 2352 |
| BssAI | RCCGGY | 5 cut(s) | 465, 1164, 1205, 2087, 2155 |
| BssMI | GATC | 7 cut(s) | 257, 370, 537, 618, 985, 1071, 1132 |
| BssNI | GRCGYC | 3 cut(s) | 225, 1041, 1658 |
| BssSI | CACGAG | 3 cut(s) | 888, 999, 1794 |
| BssT1I | CCWWGG | 6 cut(s) | 729, 775, 1056, 1896, 2031, 2203 |
| Bst2BI | CACGAG | 3 cut(s) | 888, 999, 1794 |
| Bst2UI | CCWGG | 3 cut(s) | 1562, 1652, 1823 |
| Bst4CI | ACNGT | 6 cut(s) | 354, 520, 1126, 1511, 1778, 1845 |
| Bst6I | CTCTTC | 2 cut(s) | 891, 1357 |
| BstACI | GRCGYC | 3 cut(s) | 225, 1041, 1658 |
| BstDSI | CCRYGG | 5 cut(s) | 729, 775, 1056, 1188, 2031 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 2207 |
| BstF5I | GGATG | 6 cut(s) | 222, 307, 450, 1376, 2338, 2392 |
| BstFNI | CGCG | 8 cut(s) | 278, 906, 1049, 1170, 1190, 1219, 1319, 1396 |
| BstH2I | RGCGCY | 5 cut(s) | 689, 775, 821, 1206, 1989 |
| BstHHI | GCGC | 8 cut(s) | 278, 688, 774, 820, 1170, 1205, 1219, 1988 |
| BstKTI | GATC | 7 cut(s) | 260, 373, 540, 621, 988, 1074, 1135 |
| BstMAI | GTCTC | 3 cut(s) | 1133, 1875, 2339 |
| BstMBI | GATC | 7 cut(s) | 257, 370, 537, 618, 985, 1071, 1132 |
| BstNI | CCWGG | 3 cut(s) | 1562, 1652, 1823 |
| BstNSI | RCATGY | 1 cut(s) | 670 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 954 |
| BstSCI | CCNGG | 9 cut(s) | 490, 1156, 1157, 1560, 1650, 1821, 2253, 2324, 2325 |
| BstSFI | CTRYAG | 3 cut(s) | 743, 1326, 2114 |
| BstSLI | GKGCMC | 2 cut(s) | 1394, 1623 |
| BstUI | CGCG | 8 cut(s) | 278, 906, 1049, 1170, 1190, 1219, 1319, 1396 |
| BstV1I | GCAGC | 7 cut(s) | 492, 666, 1412, 2006, 2100, 2128, 2397 |
| BstV2I | GAAGAC | 1 cut(s) | 1127 |
| BstX2I | RGATCY | 4 cut(s) | 257, 370, 618, 1132 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1822 |
| BstYI | RGATCY | 4 cut(s) | 257, 370, 618, 1132 |
| Bsu15I | ATCGAT | 1 cut(s) | 2150 |
| Bsu36I | CCTNAGG | 1 cut(s) | 839 |
| BsuI | GTATCC | 1 cut(s) | 379 |
| BsuTUI | ATCGAT | 1 cut(s) | 2150 |
| BtgI | CCRYGG | 5 cut(s) | 729, 775, 1056, 1188, 2031 |
| BtgZI | GCGATG | 1 cut(s) | 2080 |
| BtrI | CACGTC | 1 cut(s) | 1624 |
| BtsCI | GGATG | 6 cut(s) | 222, 307, 450, 1376, 2338, 2392 |
| BtsI | GCAGTG | 2 cut(s) | 250, 332 |
| BtsIMutI | CAGTG | 5 cut(s) | 111, 250, 332, 525, 1131 |
| BtuMI | TCGCGA | 1 cut(s) | 1049 |
| CfoI | GCGC | 8 cut(s) | 278, 688, 774, 820, 1170, 1205, 1219, 1988 |
| Cfr10I | RCCGGY | 5 cut(s) | 465, 1164, 1205, 2087, 2155 |
| Cfr13I | GGNCC | 7 cut(s) | 722, 1060, 1162, 1390, 1391, 1705, 1729 |
| Cfr42I | CCGCGG | 1 cut(s) | 1191 |
| Cfr9I | CCCGGG | 2 cut(s) | 1157, 2325 |
| ClaI | ATCGAT | 1 cut(s) | 2150 |
| CseI | GACGC | 7 cut(s) | 497, 1049, 1150, 1171, 1647, 1767, 1799 |
| DpnI | GATC | 7 cut(s) | 259, 372, 539, 620, 987, 1073, 1134 |
| DpnII | GATC | 7 cut(s) | 257, 370, 537, 618, 985, 1071, 1132 |
| DriI | GACNNNNNGTC | 1 cut(s) | 2352 |
| EaeI | YGGCCR | 5 cut(s) | 316, 550, 1207, 1806, 1890 |
| Eam1104I | CTCTTC | 2 cut(s) | 891, 1357 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 2352 |
| EarI | CTCTTC | 2 cut(s) | 891, 1357 |
| EciI | GGCGGA | 7 cut(s) | 296, 501, 749, 946, 2172, 2345, 2385 |
| Ecl136II | GAGCTC | 1 cut(s) | 24 |
| Eco130I | CCWWGG | 6 cut(s) | 729, 775, 1056, 1896, 2031, 2203 |
| Eco24I | GRGCYC | 3 cut(s) | 26, 1157, 1394 |
| Eco31I | GGTCTC | 1 cut(s) | 2339 |
| Eco47I | GGWCC | 3 cut(s) | 722, 1060, 1162 |
| Eco47III | AGCGCT | 2 cut(s) | 687, 1987 |
| Eco53kI | GAGCTC | 1 cut(s) | 24 |
| Eco57I | CTGAAG | 4 cut(s) | 282, 599, 1588, 1904 |
| Eco81I | CCTNAGG | 1 cut(s) | 839 |
| Eco88I | CYCGRG | 4 cut(s) | 1157, 1427, 2325, 2364 |
| EcoICRI | GAGCTC | 1 cut(s) | 24 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 2207 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1390 |
| EcoRII | CCWGG | 3 cut(s) | 1560, 1650, 1821 |
| EcoT14I | CCWWGG | 6 cut(s) | 729, 775, 1056, 1896, 2031, 2203 |
| EcoT38I | GRGCYC | 3 cut(s) | 26, 1157, 1394 |
| ErhI | CCWWGG | 6 cut(s) | 729, 775, 1056, 1896, 2031, 2203 |
| Esp3I | CGTCTC | 1 cut(s) | 1133 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 71, 103 |
| FaqI | GGGAC | 4 cut(s) | 1175, 1730, 2281, 2340 |
| FblI | GTMKAC | 1 cut(s) | 222 |
| FokI | GGATG | 6 cut(s) | 229, 294, 457, 1383, 2345, 2379 |
| FriOI | GRGCYC | 3 cut(s) | 26, 1157, 1394 |
| FspBI | CTAG | 9 cut(s) | 33, 146, 156, 189, 347, 374, 683, 1472, 2168 |
| GlaI | GCGC | 8 cut(s) | 277, 687, 773, 819, 1169, 1204, 1218, 1987 |
| GsaI | CCCAGC | 4 cut(s) | 364, 973, 1248, 2307 |
| GsuI | CTGGAG | 3 cut(s) | 1166, 1337, 1982 |
| HaeII | RGCGCY | 5 cut(s) | 689, 775, 821, 1206, 1989 |
| HgaI | GACGC | 7 cut(s) | 497, 1049, 1150, 1171, 1647, 1767, 1799 |
| HhaI | GCGC | 8 cut(s) | 278, 688, 774, 820, 1170, 1205, 1219, 1988 |
| Hin1I | GRCGYC | 3 cut(s) | 225, 1041, 1658 |
| Hin6I | GCGC | 8 cut(s) | 276, 686, 772, 818, 1168, 1203, 1217, 1986 |
| HinP1I | GCGC | 8 cut(s) | 276, 686, 772, 818, 1168, 1203, 1217, 1986 |
| HincII | GTYRAC | 5 cut(s) | 223, 463, 796, 1344, 1591 |
| HindII | GTYRAC | 5 cut(s) | 223, 463, 796, 1344, 1591 |
| HpaI | GTTAAC | 1 cut(s) | 1591 |
| HphI | GGTGA | 7 cut(s) | 511, 950, 1177, 1184, 1250, 1523, 1979 |
| Hpy166II | GTNNAC | 8 cut(s) | 109, 223, 463, 796, 1344, 1514, 1591, 2249 |
| Hpy188I | TCNGA | 6 cut(s) | 262, 618, 920, 1503, 1578, 2290 |
| Hpy188III | TCNNGA | 6 cut(s) | 255, 374, 890, 1048, 1136, 1662 |
| Hpy8I | GTNNAC | 8 cut(s) | 109, 223, 463, 796, 1344, 1514, 1591, 2249 |
| Hpy99I | CGWCG | 5 cut(s) | 227, 810, 1308, 1628, 1761 |
| HpyCH4III | ACNGT | 6 cut(s) | 354, 520, 1126, 1511, 1778, 1845 |
| HpyCH4IV | ACGT | 2 cut(s) | 225, 1623 |
| HpyCH4V | TGCA | 8 cut(s) | 10, 64, 307, 565, 745, 783, 1639, 2116 |
| HpySE526I | ACGT | 2 cut(s) | 225, 1623 |
| Hsp92I | GRCGYC | 3 cut(s) | 225, 1041, 1658 |
| HspAI | GCGC | 8 cut(s) | 276, 686, 772, 818, 1168, 1203, 1217, 1986 |
| Kpn2I | TCCGGA | 1 cut(s) | 254 |
| KroI | GCCGGC | 1 cut(s) | 1205 |
| KroNI | GCCGGC | 1 cut(s) | 1207 |
| KspAI | GTTAAC | 1 cut(s) | 1591 |
| KspI | CCGCGG | 1 cut(s) | 1191 |
| Kzo9I | GATC | 7 cut(s) | 257, 370, 537, 618, 985, 1071, 1132 |
| LmnI | GCTCC | 7 cut(s) | 21, 815, 1147, 1246, 1438, 1831, 1858 |
| Lsp1109I | GCAGC | 7 cut(s) | 492, 666, 1412, 2006, 2100, 2128, 2397 |
| LweI | GCATC | 5 cut(s) | 316, 924, 1771, 2142, 2156 |
| MaeI | CTAG | 9 cut(s) | 33, 146, 156, 189, 347, 374, 683, 1472, 2168 |
| MaeII | ACGT | 2 cut(s) | 225, 1623 |
| MaeIII | GTNAC | 8 cut(s) | 127, 589, 956, 1037, 1183, 1256, 1466, 2307 |
| MalI | GATC | 7 cut(s) | 259, 372, 539, 620, 987, 1073, 1134 |
| MbiI | CCGCTC | 2 cut(s) | 1681, 1834 |
| MboI | GATC | 7 cut(s) | 257, 370, 537, 618, 985, 1071, 1132 |
| MboII | GAAGA | 7 cut(s) | 908, 1132, 1241, 1374, 1418, 1840, 2185 |
| MflI | RGATCY | 4 cut(s) | 257, 370, 618, 1132 |
| MhlI | GDGCHC | 4 cut(s) | 26, 1157, 1394, 1623 |
| MlsI | TGGCCA | 1 cut(s) | 552 |
| MluCI | AATT | 3 cut(s) | 289, 940, 1078 |
| MluNI | TGGCCA | 1 cut(s) | 552 |
| MmeI | TCCRAC | 4 cut(s) | 1252, 1612, 1836, 2303 |
| Mox20I | TGGCCA | 1 cut(s) | 552 |
| MroI | TCCGGA | 1 cut(s) | 254 |
| MroNI | GCCGGC | 1 cut(s) | 1205 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1917 |
| MscI | TGGCCA | 1 cut(s) | 552 |
| MseI | TTAA | 5 cut(s) | 89, 237, 471, 690, 1590 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1320 |
| Msp20I | TGGCCA | 1 cut(s) | 552 |
| MspA1I | CMGCKG | 9 cut(s) | 360, 548, 601, 1190, 1248, 1280, 1357, 1924, 2272 |
| MspR9I | CCNGG | 9 cut(s) | 492, 1158, 1159, 1562, 1652, 1823, 2255, 2326, 2327 |
| MvaI | CCWGG | 3 cut(s) | 1562, 1652, 1823 |
| MvnI | CGCG | 8 cut(s) | 278, 906, 1049, 1170, 1190, 1219, 1319, 1396 |
| NaeI | GCCGGC | 1 cut(s) | 1207 |
| NciI | CCSGG | 6 cut(s) | 492, 1158, 1159, 2255, 2326, 2327 |
| NcoI | CCATGG | 4 cut(s) | 729, 775, 1056, 2031 |
| NdeII | GATC | 7 cut(s) | 257, 370, 537, 618, 985, 1071, 1132 |
| NgoMIV | GCCGGC | 1 cut(s) | 1205 |
| NheI | GCTAGC | 2 cut(s) | 682, 2167 |
| NmeAIII | GCCGAG | 1 cut(s) | 1093 |
| NmuCI | GTSAC | 7 cut(s) | 127, 589, 956, 1037, 1183, 1256, 1466 |
| NruI | TCGCGA | 1 cut(s) | 1049 |
| NspI | RCATGY | 1 cut(s) | 670 |
| OliI | CACNNNNGTG | 1 cut(s) | 1320 |
| PciI | ACATGT | 1 cut(s) | 666 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 308, 420 |
| PdiI | GCCGGC | 1 cut(s) | 1207 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1917 |
| PfeI | GAWTC | 5 cut(s) | 97, 166, 251, 845, 934 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 669, 2136 |
| PfoI | TCCNGGA | 1 cut(s) | 2253 |
| PscI | ACATGT | 1 cut(s) | 666 |
| PshAI | GACNNNNGTC | 1 cut(s) | 954 |
| Psp124BI | GAGCTC | 1 cut(s) | 26 |
| Psp6I | CCWGG | 3 cut(s) | 1560, 1650, 1821 |
| PspFI | CCCAGC | 4 cut(s) | 360, 969, 1244, 2303 |
| PspGI | CCWGG | 3 cut(s) | 1560, 1650, 1821 |
| PspOMI | GGGCCC | 1 cut(s) | 1390 |
| PspPI | GGNCC | 7 cut(s) | 722, 1060, 1162, 1390, 1391, 1705, 1729 |
| PstI | CTGCAG | 2 cut(s) | 747, 2118 |
| PsuI | RGATCY | 4 cut(s) | 257, 370, 618, 1132 |
| PvuII | CAGCTG | 1 cut(s) | 548 |
| RruI | TCGCGA | 1 cut(s) | 1049 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1320 |
| SacI | GAGCTC | 1 cut(s) | 26 |
| SacII | CCGCGG | 1 cut(s) | 1191 |
| SalI | GTCGAC | 1 cut(s) | 221 |
| SaqAI | TTAA | 5 cut(s) | 89, 237, 471, 690, 1590 |
| Sau3AI | GATC | 7 cut(s) | 257, 370, 537, 618, 985, 1071, 1132 |
| Sau96I | GGNCC | 7 cut(s) | 722, 1060, 1162, 1390, 1391, 1705, 1729 |
| ScrFI | CCNGG | 9 cut(s) | 492, 1158, 1159, 1562, 1652, 1823, 2255, 2326, 2327 |
| SduI | GDGCHC | 4 cut(s) | 26, 1157, 1394, 1623 |
| SfaNI | GCATC | 5 cut(s) | 316, 924, 1771, 2142, 2156 |
| SfcI | CTRYAG | 3 cut(s) | 743, 1326, 2114 |
| Sfr303I | CCGCGG | 1 cut(s) | 1191 |
| SgrBI | CCGCGG | 1 cut(s) | 1191 |
| SinI | GGWCC | 3 cut(s) | 722, 1060, 1162 |
| SmaI | CCCGGG | 2 cut(s) | 1159, 2327 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1320 |
| SpeI | ACTAGT | 1 cut(s) | 32 |
| Sse9I | AATT | 3 cut(s) | 289, 940, 1078 |
| SspMI | CTAG | 9 cut(s) | 33, 146, 156, 189, 347, 374, 683, 1472, 2168 |
| SstI | GAGCTC | 1 cut(s) | 26 |
| StyD4I | CCNGG | 9 cut(s) | 490, 1156, 1157, 1560, 1650, 1821, 2253, 2324, 2325 |
| StyI | CCWWGG | 6 cut(s) | 729, 775, 1056, 1896, 2031, 2203 |
| TaaI | ACNGT | 6 cut(s) | 354, 520, 1126, 1511, 1778, 1845 |
| TaiI | ACGT | 2 cut(s) | 228, 1626 |
| TaqI | TCGA | 9 cut(s) | 114, 164, 222, 408, 536, 1074, 1752, 2133, 2150 |
| TaqII | GACCGA | 3 cut(s) | 739, 2030, 2087 |
| TasI | AATT | 3 cut(s) | 289, 940, 1078 |
| TatI | WGTACW | 2 cut(s) | 2001, 2058 |
| TfiI | GAWTC | 5 cut(s) | 97, 166, 251, 845, 934 |
| Tru1I | TTAA | 5 cut(s) | 89, 237, 471, 690, 1590 |
| Tru9I | TTAA | 5 cut(s) | 89, 237, 471, 690, 1590 |
| TscAI | CASTG | 5 cut(s) | 111, 250, 339, 525, 1131 |
| TseFI | GTSAC | 7 cut(s) | 127, 589, 956, 1037, 1183, 1256, 1466 |
| TseI | GCWGC | 7 cut(s) | 505, 679, 1400, 1994, 2113, 2116, 2385 |
| Tsp45I | GTSAC | 7 cut(s) | 127, 589, 956, 1037, 1183, 1256, 1466 |
| TspGWI | ACGGA | 2 cut(s) | 300, 944 |
| TspMI | CCCGGG | 2 cut(s) | 1157, 2325 |
| TspRI | CASTG | 5 cut(s) | 111, 250, 339, 525, 1131 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 669, 2136 |
| VpaK11BI | GGWCC | 3 cut(s) | 722, 1060, 1162 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 2207 |
| XapI | RAATTY | 1 cut(s) | 289 |
| XbaI | TCTAGA | 1 cut(s) | 373 |
| XceI | RCATGY | 1 cut(s) | 670 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 1268, 2101 |
| XmaI | CCCGGG | 2 cut(s) | 1157, 2325 |
| XmiI | GTMKAC | 1 cut(s) | 222 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1917 |
| XspI | CTAG | 9 cut(s) | 33, 146, 156, 189, 347, 374, 683, 1472, 2168 |
| ZraI | GACGTC | 1 cut(s) | 226 |