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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 3 cut(s) | 60, 436, 629 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 426 |
| AccBSI | CCGCTC | 3 cut(s) | 124, 136, 656 |
| AccII | CGCG | 2 cut(s) | 476, 594 |
| AclWI | GGATC | 3 cut(s) | 192, 211, 670 |
| AcoI | YGGCCR | 1 cut(s) | 606 |
| AcuI | CTGAAG | 2 cut(s) | 206, 425 |
| AcyI | GRCGYC | 1 cut(s) | 437 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 70, 123, 226, 426, 707 |
| AgsI | TTSAA | 2 cut(s) | 181, 331 |
| AjnI | CCWGG | 1 cut(s) | 681 |
| AleI | CACNNNNGTG | 1 cut(s) | 635 |
| AluBI | AGCT | 4 cut(s) | 43, 106, 190, 466 |
| AluI | AGCT | 4 cut(s) | 43, 106, 190, 466 |
| Alw26I | GTCTC | 1 cut(s) | 14 |
| AlwI | GGATC | 3 cut(s) | 192, 211, 670 |
| Ama87I | CYCGRG | 2 cut(s) | 96, 618 |
| AoxI | GGCC | 5 cut(s) | 30, 72, 375, 381, 606 |
| ApeKI | GCWGC | 1 cut(s) | 311 |
| AspLEI | GCGC | 2 cut(s) | 419, 439 |
| AspS9I | GGNCC | 3 cut(s) | 381, 397, 487 |
| AsuC2I | CCSGG | 2 cut(s) | 379, 451 |
| AsuHPI | GGTGA | 3 cut(s) | 281, 442, 545 |
| AvaI | CYCGRG | 2 cut(s) | 96, 618 |
| AvaII | GGWCC | 2 cut(s) | 397, 487 |
| BalI | TGGCCA | 1 cut(s) | 608 |
| BanI | GGYRCC | 3 cut(s) | 60, 436, 629 |
| BanII | GRGCYC | 1 cut(s) | 650 |
| BbvI | GCAGC | 1 cut(s) | 323 |
| BccI | CCATC | 1 cut(s) | 620 |
| BceAI | ACGGC | 3 cut(s) | 302, 357, 368 |
| BciT130I | CCWGG | 1 cut(s) | 683 |
| BclI | TGATCA | 1 cut(s) | 667 |
| BcnI | CCSGG | 2 cut(s) | 379, 451 |
| BcoDI | GTCTC | 1 cut(s) | 14 |
| BfoI | RGCGCY | 1 cut(s) | 440 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 323 |
| BisI | GCNGC | 5 cut(s) | 195, 237, 312, 315, 369 |
| BlsI | GCNGC | 5 cut(s) | 196, 238, 313, 316, 370 |
| Bme1390I | CCNGG | 3 cut(s) | 379, 451, 683 |
| Bme18I | GGWCC | 2 cut(s) | 397, 487 |
| BmeT110I | CYCGRG | 2 cut(s) | 96, 618 |
| BmgT120I | GGNCC | 3 cut(s) | 381, 397, 487 |
| BmiI | GGNNCC | 5 cut(s) | 62, 382, 438, 489, 631 |
| BmrFI | CCNGG | 3 cut(s) | 379, 451, 683 |
| BmrI | ACTGGG | 1 cut(s) | 436 |
| BmsI | GCATC | 1 cut(s) | 82 |
| BmuI | ACTGGG | 1 cut(s) | 436 |
| BpmI | CTGGAG | 1 cut(s) | 516 |
| Bpu10I | CCTNAGC | 1 cut(s) | 514 |
| BpuMI | CCSGG | 2 cut(s) | 379, 451 |
| BsaBI | GATNNNNATC | 1 cut(s) | 215 |
| BsaHI | GRCGYC | 1 cut(s) | 437 |
| BsaI | GGTCTC | 1 cut(s) | 14 |
| BsaJI | CCNNGG | 3 cut(s) | 69, 318, 378 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 553, 583 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 70, 123, 226, 426, 707 |
| Bse118I | RCCGGY | 1 cut(s) | 703 |
| Bse1I | ACTGG | 2 cut(s) | 431, 499 |
| Bse8I | GATNNNNATC | 1 cut(s) | 215 |
| BseBI | CCWGG | 1 cut(s) | 683 |
| BseDI | CCNNGG | 3 cut(s) | 69, 318, 378 |
| BseGI | GGATG | 2 cut(s) | 97, 631 |
| BseJI | GATNNNNATC | 1 cut(s) | 215 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 70, 123, 226, 426, 707 |
| BseMII | CTCAG | 2 cut(s) | 569, 723 |
| BseNI | ACTGG | 2 cut(s) | 431, 499 |
| BseRI | GAGGAG | 1 cut(s) | 310 |
| BseXI | GCAGC | 1 cut(s) | 323 |
| BseYI | CCCAGC | 2 cut(s) | 279, 686 |
| Bsh1236I | CGCG | 2 cut(s) | 476, 594 |
| Bsh1285I | CGRYCG | 1 cut(s) | 708 |
| BshFI | GGCC | 5 cut(s) | 32, 74, 377, 383, 608 |
| BshNI | GGYRCC | 3 cut(s) | 60, 436, 629 |
| BsiEI | CGRYCG | 1 cut(s) | 708 |
| BsiHKCI | CYCGRG | 2 cut(s) | 96, 618 |
| BsiSI | CCGG | 4 cut(s) | 378, 450, 542, 704 |
| BslFI | GGGAC | 2 cut(s) | 242, 473 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 70, 123, 226, 426, 707 |
| BsmAI | GTCTC | 1 cut(s) | 14 |
| BsmFI | GGGAC | 2 cut(s) | 242, 473 |
| BsmI | GAATGC | 1 cut(s) | 326 |
| BsnI | GGCC | 5 cut(s) | 32, 74, 377, 383, 608 |
| Bso31I | GGTCTC | 1 cut(s) | 14 |
| BsoBI | CYCGRG | 2 cut(s) | 96, 618 |
| Bsp1286I | GDGCHC | 1 cut(s) | 650 |
| Bsp143I | GATC | 4 cut(s) | 184, 216, 662, 667 |
| BspANI | GGCC | 5 cut(s) | 32, 74, 377, 383, 608 |
| BspCNI | CTCAG | 2 cut(s) | 568, 724 |
| BspFNI | CGCG | 2 cut(s) | 476, 594 |
| BspLI | GGNNCC | 5 cut(s) | 62, 382, 438, 489, 631 |
| BspPI | GGATC | 3 cut(s) | 192, 211, 670 |
| BspT107I | GGYRCC | 3 cut(s) | 60, 436, 629 |
| BspTNI | GGTCTC | 1 cut(s) | 14 |
| BsrBI | CCGCTC | 3 cut(s) | 124, 136, 656 |
| BsrFI | RCCGGY | 1 cut(s) | 703 |
| BsrI | ACTGG | 2 cut(s) | 431, 499 |
| BssAI | RCCGGY | 1 cut(s) | 703 |
| BssECI | CCNNGG | 3 cut(s) | 69, 318, 378 |
| BssMI | GATC | 4 cut(s) | 184, 216, 662, 667 |
| BssNI | GRCGYC | 1 cut(s) | 437 |
| BssT1I | CCWWGG | 1 cut(s) | 69 |
| Bst2UI | CCWGG | 1 cut(s) | 683 |
| Bst4CI | ACNGT | 2 cut(s) | 8, 146 |
| BstACI | GRCGYC | 1 cut(s) | 437 |
| BstC8I | GCNNGC | 3 cut(s) | 45, 104, 192 |
| BstDEI | CTNAG | 3 cut(s) | 514, 555, 732 |
| BstDSI | CCRYGG | 1 cut(s) | 318 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 68 |
| BstF5I | GGATG | 2 cut(s) | 97, 631 |
| BstFNI | CGCG | 2 cut(s) | 476, 594 |
| BstH2I | RGCGCY | 1 cut(s) | 440 |
| BstHHI | GCGC | 2 cut(s) | 419, 439 |
| BstKTI | GATC | 4 cut(s) | 187, 219, 665, 670 |
| BstMAI | GTCTC | 1 cut(s) | 14 |
| BstMBI | GATC | 4 cut(s) | 184, 216, 662, 667 |
| BstMCI | CGRYCG | 1 cut(s) | 708 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 245, 323, 374 |
| BstNI | CCWGG | 1 cut(s) | 683 |
| BstSCI | CCNGG | 3 cut(s) | 377, 449, 681 |
| BstUI | CGCG | 2 cut(s) | 476, 594 |
| BstV1I | GCAGC | 1 cut(s) | 323 |
| BstX2I | RGATCY | 2 cut(s) | 216, 662 |
| BstYI | RGATCY | 2 cut(s) | 216, 662 |
| BsuRI | GGCC | 5 cut(s) | 32, 74, 377, 383, 608 |
| BtgI | CCRYGG | 1 cut(s) | 318 |
| BtsCI | GGATG | 2 cut(s) | 97, 631 |
| BtsI | GCAGTG | 1 cut(s) | 84 |
| BtsIMutI | CAGTG | 1 cut(s) | 84 |
| Cac8I | GCNNGC | 3 cut(s) | 45, 104, 192 |
| CfoI | GCGC | 2 cut(s) | 419, 439 |
| Cfr10I | RCCGGY | 1 cut(s) | 703 |
| Cfr13I | GGNCC | 3 cut(s) | 381, 397, 487 |
| CseI | GACGC | 1 cut(s) | 527 |
| CviAII | CATG | 2 cut(s) | 604, 659 |
| DdeI | CTNAG | 3 cut(s) | 514, 555, 732 |
| DinI | GGCGCC | 1 cut(s) | 438 |
| DpnI | GATC | 4 cut(s) | 186, 218, 664, 669 |
| DpnII | GATC | 4 cut(s) | 184, 216, 662, 667 |
| EaeI | YGGCCR | 1 cut(s) | 606 |
| EciI | GGCGGA | 3 cut(s) | 62, 436, 560 |
| Eco130I | CCWWGG | 1 cut(s) | 69 |
| Eco24I | GRGCYC | 1 cut(s) | 650 |
| Eco31I | GGTCTC | 1 cut(s) | 14 |
| Eco47I | GGWCC | 2 cut(s) | 397, 487 |
| Eco57I | CTGAAG | 2 cut(s) | 206, 425 |
| Eco88I | CYCGRG | 2 cut(s) | 96, 618 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 68 |
| EcoRII | CCWGG | 1 cut(s) | 681 |
| EcoT14I | CCWWGG | 1 cut(s) | 69 |
| EcoT38I | GRGCYC | 1 cut(s) | 650 |
| EgeI | GGCGCC | 1 cut(s) | 438 |
| EheI | GGCGCC | 1 cut(s) | 438 |
| ErhI | CCWWGG | 1 cut(s) | 69 |
| FaeI | CATG | 2 cut(s) | 607, 662 |
| FaiI | YATR | 8 cut(s) | 170, 305, 348, 362, 605, 615, 635, 660 |
| FaqI | GGGAC | 2 cut(s) | 242, 473 |
| FatI | CATG | 2 cut(s) | 603, 658 |
| FauI | CCCGC | 2 cut(s) | 117, 219 |
| FbaI | TGATCA | 1 cut(s) | 667 |
| Fnu4HI | GCNGC | 5 cut(s) | 195, 237, 312, 315, 369 |
| FokI | GGATG | 2 cut(s) | 104, 638 |
| FriOI | GRGCYC | 1 cut(s) | 650 |
| Fsp4HI | GCNGC | 5 cut(s) | 195, 237, 312, 315, 369 |
| GlaI | GCGC | 2 cut(s) | 418, 438 |
| GluI | GCNGC | 5 cut(s) | 195, 237, 312, 315, 369 |
| GsaI | CCCAGC | 2 cut(s) | 283, 690 |
| GsuI | CTGGAG | 1 cut(s) | 516 |
| HaeII | RGCGCY | 1 cut(s) | 440 |
| HaeIII | GGCC | 5 cut(s) | 32, 74, 377, 383, 608 |
| HapII | CCGG | 4 cut(s) | 378, 450, 542, 704 |
| HgaI | GACGC | 1 cut(s) | 527 |
| HhaI | GCGC | 2 cut(s) | 419, 439 |
| Hin1I | GRCGYC | 1 cut(s) | 437 |
| Hin1II | CATG | 2 cut(s) | 607, 662 |
| Hin6I | GCGC | 2 cut(s) | 417, 437 |
| HinP1I | GCGC | 2 cut(s) | 417, 437 |
| HinfI | GANTC | 6 cut(s) | 230, 470, 498, 551, 562, 676 |
| HpaII | CCGG | 4 cut(s) | 378, 450, 542, 704 |
| HphI | GGTGA | 3 cut(s) | 281, 442, 545 |
| Hpy188I | TCNGA | 4 cut(s) | 405, 583, 667, 672 |
| Hpy188III | TCNNGA | 2 cut(s) | 205, 731 |
| Hpy99I | CGWCG | 3 cut(s) | 343, 389, 460 |
| HpyAV | CCTTC | 6 cut(s) | 175, 193, 230, 367, 410, 427 |
| HpyCH4III | ACNGT | 2 cut(s) | 8, 146 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 245, 323, 374 |
| HpyF3I | CTNAG | 3 cut(s) | 514, 555, 732 |
| Hsp92I | GRCGYC | 1 cut(s) | 437 |
| Hsp92II | CATG | 2 cut(s) | 607, 662 |
| HspAI | GCGC | 2 cut(s) | 417, 437 |
| KasI | GGCGCC | 1 cut(s) | 436 |
| Ksp22I | TGATCA | 1 cut(s) | 667 |
| Kzo9I | GATC | 4 cut(s) | 184, 216, 662, 667 |
| LmnI | GCTCC | 3 cut(s) | 133, 160, 733 |
| Lsp1109I | GCAGC | 1 cut(s) | 323 |
| LweI | GCATC | 1 cut(s) | 82 |
| MalI | GATC | 4 cut(s) | 186, 218, 664, 669 |
| MbiI | CCGCTC | 3 cut(s) | 124, 136, 656 |
| MboI | GATC | 4 cut(s) | 184, 216, 662, 667 |
| MboII | GAAGA | 1 cut(s) | 220 |
| MfeI | CAATTG | 1 cut(s) | 155 |
| MflI | RGATCY | 2 cut(s) | 216, 662 |
| MhlI | GDGCHC | 1 cut(s) | 650 |
| MlsI | TGGCCA | 1 cut(s) | 608 |
| MluCI | AATT | 2 cut(s) | 155, 357 |
| MluNI | TGGCCA | 1 cut(s) | 608 |
| Mly113I | GGCGCC | 1 cut(s) | 437 |
| MlyI | GAGTC | 4 cut(s) | 224, 507, 556, 685 |
| MmeI | TCCRAC | 1 cut(s) | 111 |
| Mox20I | TGGCCA | 1 cut(s) | 608 |
| MscI | TGGCCA | 1 cut(s) | 608 |
| MslI | CAYNNNNRTG | 2 cut(s) | 635, 638 |
| Msp20I | TGGCCA | 1 cut(s) | 608 |
| MspA1I | CMGCKG | 5 cut(s) | 58, 190, 226, 466, 559 |
| MspI | CCGG | 4 cut(s) | 378, 450, 542, 704 |
| MspR9I | CCNGG | 3 cut(s) | 379, 451, 683 |
| MunI | CAATTG | 1 cut(s) | 155 |
| Mva1269I | GAATGC | 1 cut(s) | 326 |
| MvaI | CCWGG | 1 cut(s) | 683 |
| MvnI | CGCG | 2 cut(s) | 476, 594 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 245, 323, 374 |
| NarI | GGCGCC | 1 cut(s) | 437 |
| NciI | CCSGG | 2 cut(s) | 379, 451 |
| NdeII | GATC | 4 cut(s) | 184, 216, 662, 667 |
| NlaIII | CATG | 2 cut(s) | 607, 662 |
| NlaIV | GGNNCC | 5 cut(s) | 62, 382, 438, 489, 631 |
| OliI | CACNNNNGTG | 1 cut(s) | 635 |
| PaeR7I | CTCGAG | 1 cut(s) | 96 |
| PctI | GAATGC | 1 cut(s) | 326 |
| PfeI | GAWTC | 2 cut(s) | 470, 551 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 426 |
| PkrI | GCNGC | 5 cut(s) | 196, 238, 313, 316, 370 |
| PleI | GAGTC | 4 cut(s) | 224, 506, 556, 684 |
| PluTI | GGCGCC | 1 cut(s) | 440 |
| PpsI | GAGTC | 4 cut(s) | 224, 506, 556, 684 |
| Psp6I | CCWGG | 1 cut(s) | 681 |
| PspFI | CCCAGC | 2 cut(s) | 279, 686 |
| PspGI | CCWGG | 1 cut(s) | 681 |
| PspN4I | GGNNCC | 5 cut(s) | 62, 382, 438, 489, 631 |
| PspPI | GGNCC | 3 cut(s) | 381, 397, 487 |
| PspXI | VCTCGAGB | 1 cut(s) | 96 |
| PsuI | RGATCY | 2 cut(s) | 216, 662 |
| PvuII | CAGCTG | 2 cut(s) | 190, 466 |
| RseI | CAYNNNNRTG | 2 cut(s) | 635, 638 |
| SatI | GCNGC | 5 cut(s) | 195, 237, 312, 315, 369 |
| Sau3AI | GATC | 4 cut(s) | 184, 216, 662, 667 |
| Sau96I | GGNCC | 3 cut(s) | 381, 397, 487 |
| SchI | GAGTC | 4 cut(s) | 224, 507, 556, 685 |
| ScrFI | CCNGG | 3 cut(s) | 379, 451, 683 |
| SduI | GDGCHC | 1 cut(s) | 650 |
| SfaNI | GCATC | 1 cut(s) | 82 |
| SfoI | GGCGCC | 1 cut(s) | 438 |
| Sfr274I | CTCGAG | 1 cut(s) | 96 |
| SinI | GGWCC | 2 cut(s) | 397, 487 |
| SlaI | CTCGAG | 1 cut(s) | 96 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 635, 638 |
| SmlI | CTYRAG | 1 cut(s) | 96 |
| SmoI | CTYRAG | 1 cut(s) | 96 |
| Sse9I | AATT | 2 cut(s) | 155, 357 |
| SspDI | GGCGCC | 1 cut(s) | 436 |
| StyD4I | CCNGG | 3 cut(s) | 377, 449, 681 |
| StyI | CCWWGG | 1 cut(s) | 69 |
| TaaI | ACNGT | 2 cut(s) | 8, 146 |
| TaqI | TCGA | 4 cut(s) | 97, 338, 501, 644 |
| TasI | AATT | 2 cut(s) | 155, 357 |
| TauI | GCSGC | 4 cut(s) | 197, 239, 317, 371 |
| TfiI | GAWTC | 2 cut(s) | 470, 551 |
| TscAI | CASTG | 1 cut(s) | 91 |
| TseI | GCWGC | 1 cut(s) | 311 |
| TspDTI | ATGAA | 2 cut(s) | 17, 592 |
| TspRI | CASTG | 1 cut(s) | 91 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 426 |
| VpaK11BI | GGWCC | 2 cut(s) | 397, 487 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 68 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 40 |
| XhoI | CTCGAG | 1 cut(s) | 96 |