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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 179, 205 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 189 |
| AccBSI | CCGCTC | 2 cut(s) | 254, 303 |
| AccII | CGCG | 2 cut(s) | 29, 341 |
| AclI | AACGTT | 1 cut(s) | 516 |
| AclWI | GGATC | 1 cut(s) | 43 |
| AcoI | YGGCCR | 1 cut(s) | 283 |
| AcsI | RAATTY | 1 cut(s) | 326 |
| AcuI | CTGAAG | 1 cut(s) | 38 |
| AcyI | GRCGYC | 1 cut(s) | 180 |
| AfaI | GTAC | 1 cut(s) | 250 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 12, 13, 58, 189, 286, 381, 402, 403 |
| AgsI | TTSAA | 1 cut(s) | 293 |
| AjnI | CCWGG | 3 cut(s) | 280, 285, 535 |
| AluBI | AGCT | 3 cut(s) | 152, 200, 233 |
| AluI | AGCT | 3 cut(s) | 152, 200, 233 |
| AlwI | GGATC | 1 cut(s) | 43 |
| Ama87I | CYCGRG | 3 cut(s) | 304, 402, 441 |
| AoxI | GGCC | 5 cut(s) | 130, 138, 283, 342, 480 |
| ApeKI | GCWGC | 5 cut(s) | 166, 169, 217, 263, 392 |
| ApoI | RAATTY | 1 cut(s) | 326 |
| AspLEI | GCGC | 2 cut(s) | 182, 341 |
| AspS9I | GGNCC | 3 cut(s) | 16, 131, 343 |
| AsuC2I | CCSGG | 3 cut(s) | 20, 403, 404 |
| AsuHPI | GGTGA | 2 cut(s) | 34, 113 |
| AvaI | CYCGRG | 3 cut(s) | 304, 402, 441 |
| AvaII | GGWCC | 1 cut(s) | 16 |
| BalI | TGGCCA | 1 cut(s) | 285 |
| BanI | GGYRCC | 2 cut(s) | 179, 205 |
| BanII | GRGCYC | 1 cut(s) | 301 |
| BbvCI | CCTCAGC | 2 cut(s) | 11, 123 |
| BbvI | GCAGC | 5 cut(s) | 153, 181, 229, 250, 379 |
| BccI | CCATC | 4 cut(s) | 191, 229, 404, 477 |
| BceAI | ACGGC | 1 cut(s) | 447 |
| BciT130I | CCWGG | 3 cut(s) | 282, 287, 537 |
| BcnI | CCSGG | 3 cut(s) | 20, 403, 404 |
| BfaI | CTAG | 1 cut(s) | 429 |
| BfmI | CTRYAG | 1 cut(s) | 167 |
| BfoI | RGCGCY | 1 cut(s) | 183 |
| BisI | GCNGC | 8 cut(s) | 69, 167, 170, 218, 264, 342, 393, 483 |
| BlsI | GCNGC | 8 cut(s) | 70, 168, 171, 219, 265, 343, 394, 484 |
| Bme1390I | CCNGG | 6 cut(s) | 20, 282, 287, 403, 404, 537 |
| Bme18I | GGWCC | 1 cut(s) | 16 |
| BmeT110I | CYCGRG | 3 cut(s) | 304, 402, 441 |
| BmgT120I | GGNCC | 3 cut(s) | 16, 131, 343 |
| BmiI | GGNNCC | 5 cut(s) | 17, 181, 207, 298, 511 |
| BmrFI | CCNGG | 6 cut(s) | 20, 282, 287, 403, 404, 537 |
| BmrI | ACTGGG | 1 cut(s) | 199 |
| BmsI | GCATC | 3 cut(s) | 133, 153, 484 |
| BmuI | ACTGGG | 1 cut(s) | 199 |
| Bpu10I | CCTNAGC | 3 cut(s) | 11, 123, 148 |
| BpuMI | CCSGG | 3 cut(s) | 20, 403, 404 |
| BsaHI | GRCGYC | 1 cut(s) | 180 |
| BsaJI | CCNNGG | 6 cut(s) | 225, 280, 402, 442, 499, 535 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 501, 531 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 12, 13, 58, 189, 286, 381, 402, 403 |
| Bse118I | RCCGGY | 1 cut(s) | 208 |
| Bse1I | ACTGG | 2 cut(s) | 194, 246 |
| BseBI | CCWGG | 3 cut(s) | 282, 287, 537 |
| BseDI | CCNNGG | 6 cut(s) | 225, 280, 402, 442, 499, 535 |
| BseGI | GGATG | 2 cut(s) | 221, 469 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 12, 13, 58, 189, 286, 381, 402, 403 |
| BseMII | CTCAG | 2 cut(s) | 114, 357 |
| BseNI | ACTGG | 2 cut(s) | 194, 246 |
| BseXI | GCAGC | 5 cut(s) | 153, 181, 229, 250, 379 |
| BseYI | CCCAGC | 2 cut(s) | 345, 380 |
| BsgI | GTGCAG | 1 cut(s) | 236 |
| Bsh1236I | CGCG | 2 cut(s) | 29, 341 |
| BshFI | GGCC | 5 cut(s) | 132, 140, 285, 344, 482 |
| BshNI | GGYRCC | 2 cut(s) | 179, 205 |
| BsiHKCI | CYCGRG | 3 cut(s) | 304, 402, 441 |
| BsiSI | CCGG | 4 cut(s) | 19, 209, 236, 403 |
| BslFI | GGGAC | 3 cut(s) | 29, 358, 417 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 12, 13, 58, 189, 286, 381, 402, 403 |
| BsmFI | GGGAC | 3 cut(s) | 29, 358, 417 |
| BsnI | GGCC | 5 cut(s) | 132, 140, 285, 344, 482 |
| BsoBI | CYCGRG | 3 cut(s) | 304, 402, 441 |
| Bsp1286I | GDGCHC | 1 cut(s) | 301 |
| Bsp143I | GATC | 2 cut(s) | 48, 84 |
| BspANI | GGCC | 5 cut(s) | 132, 140, 285, 344, 482 |
| BspCNI | CTCAG | 2 cut(s) | 115, 358 |
| BspFNI | CGCG | 2 cut(s) | 29, 341 |
| BspLI | GGNNCC | 5 cut(s) | 17, 181, 207, 298, 511 |
| BspMAI | CTGCAG | 1 cut(s) | 171 |
| BspPI | GGATC | 1 cut(s) | 43 |
| BspT107I | GGYRCC | 2 cut(s) | 179, 205 |
| BsrBI | CCGCTC | 2 cut(s) | 254, 303 |
| BsrFI | RCCGGY | 1 cut(s) | 208 |
| BsrI | ACTGG | 2 cut(s) | 194, 246 |
| BssAI | RCCGGY | 1 cut(s) | 208 |
| BssECI | CCNNGG | 6 cut(s) | 225, 280, 402, 442, 499, 535 |
| BssMI | GATC | 2 cut(s) | 48, 84 |
| BssNI | GRCGYC | 1 cut(s) | 180 |
| BssT1I | CCWWGG | 2 cut(s) | 225, 499 |
| Bst2UI | CCWGG | 3 cut(s) | 282, 287, 537 |
| Bst4CI | ACNGT | 1 cut(s) | 418 |
| BstACI | GRCGYC | 1 cut(s) | 180 |
| BstC8I | GCNNGC | 5 cut(s) | 112, 210, 301, 480, 487 |
| BstDEI | CTNAG | 4 cut(s) | 11, 123, 148, 366 |
| BstEII | GGTNACC | 1 cut(s) | 22 |
| BstF5I | GGATG | 2 cut(s) | 221, 469 |
| BstFNI | CGCG | 2 cut(s) | 29, 341 |
| BstH2I | RGCGCY | 1 cut(s) | 183 |
| BstHHI | GCGC | 2 cut(s) | 182, 341 |
| BstKTI | GATC | 2 cut(s) | 51, 87 |
| BstMBI | GATC | 2 cut(s) | 48, 84 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 77, 214, 260, 272, 309, 518, 527 |
| BstNI | CCWGG | 3 cut(s) | 282, 287, 537 |
| BstPI | GGTNACC | 1 cut(s) | 22 |
| BstSCI | CCNGG | 6 cut(s) | 18, 280, 285, 401, 402, 535 |
| BstSFI | CTRYAG | 1 cut(s) | 167 |
| BstUI | CGCG | 2 cut(s) | 29, 341 |
| BstV1I | GCAGC | 5 cut(s) | 153, 181, 229, 250, 379 |
| BstX2I | RGATCY | 1 cut(s) | 48 |
| BstYI | RGATCY | 1 cut(s) | 48 |
| BsuRI | GGCC | 5 cut(s) | 132, 140, 285, 344, 482 |
| BtsCI | GGATG | 2 cut(s) | 221, 469 |
| BtsI | GCAGTG | 2 cut(s) | 219, 258 |
| BtsIMutI | CAGTG | 2 cut(s) | 219, 258 |
| Cac8I | GCNNGC | 5 cut(s) | 112, 210, 301, 480, 487 |
| CfoI | GCGC | 2 cut(s) | 182, 341 |
| Cfr10I | RCCGGY | 1 cut(s) | 208 |
| Cfr13I | GGNCC | 3 cut(s) | 16, 131, 343 |
| Cfr9I | CCCGGG | 1 cut(s) | 402 |
| Csp6I | GTAC | 1 cut(s) | 249 |
| CviQI | GTAC | 1 cut(s) | 249 |
| DdeI | CTNAG | 4 cut(s) | 11, 123, 148, 366 |
| DinI | GGCGCC | 1 cut(s) | 181 |
| DpnI | GATC | 2 cut(s) | 50, 86 |
| DpnII | GATC | 2 cut(s) | 48, 84 |
| EaeI | YGGCCR | 1 cut(s) | 283 |
| Eco130I | CCWWGG | 2 cut(s) | 225, 499 |
| Eco24I | GRGCYC | 1 cut(s) | 301 |
| Eco47I | GGWCC | 1 cut(s) | 16 |
| Eco57I | CTGAAG | 1 cut(s) | 38 |
| Eco88I | CYCGRG | 3 cut(s) | 304, 402, 441 |
| Eco91I | GGTNACC | 1 cut(s) | 22 |
| EcoO65I | GGTNACC | 1 cut(s) | 22 |
| EcoRII | CCWGG | 3 cut(s) | 280, 285, 535 |
| EcoT14I | CCWWGG | 2 cut(s) | 225, 499 |
| EcoT38I | GRGCYC | 1 cut(s) | 301 |
| EgeI | GGCGCC | 1 cut(s) | 181 |
| EheI | GGCGCC | 1 cut(s) | 181 |
| ErhI | CCWWGG | 2 cut(s) | 225, 499 |
| FaqI | GGGAC | 3 cut(s) | 29, 358, 417 |
| FauI | CCCGC | 4 cut(s) | 51, 305, 308, 535 |
| Fnu4HI | GCNGC | 8 cut(s) | 69, 167, 170, 218, 264, 342, 393, 483 |
| FokI | GGATG | 2 cut(s) | 208, 456 |
| FriOI | GRGCYC | 1 cut(s) | 301 |
| Fsp4HI | GCNGC | 8 cut(s) | 69, 167, 170, 218, 264, 342, 393, 483 |
| FspBI | CTAG | 1 cut(s) | 429 |
| GlaI | GCGC | 2 cut(s) | 181, 340 |
| GluI | GCNGC | 8 cut(s) | 69, 167, 170, 218, 264, 342, 393, 483 |
| GsaI | CCCAGC | 2 cut(s) | 349, 384 |
| HaeII | RGCGCY | 1 cut(s) | 183 |
| HaeIII | GGCC | 5 cut(s) | 132, 140, 285, 344, 482 |
| HapII | CCGG | 4 cut(s) | 19, 209, 236, 403 |
| HhaI | GCGC | 2 cut(s) | 182, 341 |
| Hin1I | GRCGYC | 1 cut(s) | 180 |
| Hin6I | GCGC | 2 cut(s) | 180, 339 |
| HinP1I | GCGC | 2 cut(s) | 180, 339 |
| HindIII | AAGCTT | 1 cut(s) | 198 |
| HinfI | GANTC | 1 cut(s) | 352 |
| HpaII | CCGG | 4 cut(s) | 19, 209, 236, 403 |
| HphI | GGTGA | 2 cut(s) | 34, 113 |
| Hpy188I | TCNGA | 2 cut(s) | 367, 451 |
| HpyAV | CCTTC | 4 cut(s) | 25, 62, 130, 287 |
| HpyCH4III | ACNGT | 1 cut(s) | 418 |
| HpyCH4IV | ACGT | 1 cut(s) | 516 |
| HpyCH4V | TGCA | 2 cut(s) | 169, 217 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 77, 214, 260, 272, 309, 518, 527 |
| HpyF3I | CTNAG | 4 cut(s) | 11, 123, 148, 366 |
| HpySE526I | ACGT | 1 cut(s) | 516 |
| Hsp92I | GRCGYC | 1 cut(s) | 180 |
| HspAI | GCGC | 2 cut(s) | 180, 339 |
| KasI | GGCGCC | 1 cut(s) | 179 |
| KroI | GCCGGC | 1 cut(s) | 208 |
| KroNI | GCCGGC | 1 cut(s) | 210 |
| Kzo9I | GATC | 2 cut(s) | 48, 84 |
| LmnI | GCTCC | 4 cut(s) | 238, 259, 296, 509 |
| Lsp1109I | GCAGC | 5 cut(s) | 153, 181, 229, 250, 379 |
| LweI | GCATC | 3 cut(s) | 133, 153, 484 |
| MaeI | CTAG | 1 cut(s) | 429 |
| MaeII | ACGT | 1 cut(s) | 516 |
| MaeIII | GTNAC | 1 cut(s) | 22 |
| MalI | GATC | 2 cut(s) | 50, 86 |
| MbiI | CCGCTC | 2 cut(s) | 254, 303 |
| MboI | GATC | 2 cut(s) | 48, 84 |
| MboII | GAAGA | 1 cut(s) | 49 |
| MflI | RGATCY | 1 cut(s) | 48 |
| MhlI | GDGCHC | 1 cut(s) | 301 |
| MlsI | TGGCCA | 1 cut(s) | 285 |
| MluCI | AATT | 1 cut(s) | 326 |
| MluNI | TGGCCA | 1 cut(s) | 285 |
| Mly113I | GGCGCC | 1 cut(s) | 180 |
| MlyI | GAGTC | 1 cut(s) | 346 |
| MmeI | TCCRAC | 1 cut(s) | 75 |
| MnlI | CCTC | 9 cut(s) | 6, 91, 112, 118, 122, 286, 328, 386, 437 |
| Mox20I | TGGCCA | 1 cut(s) | 285 |
| MroNI | GCCGGC | 1 cut(s) | 208 |
| MscI | TGGCCA | 1 cut(s) | 285 |
| Msp20I | TGGCCA | 1 cut(s) | 285 |
| MspA1I | CMGCKG | 3 cut(s) | 58, 349, 489 |
| MspI | CCGG | 4 cut(s) | 19, 209, 236, 403 |
| MspR9I | CCNGG | 6 cut(s) | 20, 282, 287, 403, 404, 537 |
| MvaI | CCWGG | 3 cut(s) | 282, 287, 537 |
| MvnI | CGCG | 2 cut(s) | 29, 341 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 77, 214, 260, 272, 309, 518, 527 |
| NaeI | GCCGGC | 1 cut(s) | 210 |
| NarI | GGCGCC | 1 cut(s) | 180 |
| NciI | CCSGG | 3 cut(s) | 20, 403, 404 |
| NdeII | GATC | 2 cut(s) | 48, 84 |
| NgoMIV | GCCGGC | 1 cut(s) | 208 |
| NlaIV | GGNNCC | 5 cut(s) | 17, 181, 207, 298, 511 |
| NmuCI | GTSAC | 1 cut(s) | 22 |
| PdiI | GCCGGC | 1 cut(s) | 210 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 189 |
| PkrI | GCNGC | 8 cut(s) | 70, 168, 171, 219, 265, 343, 394, 484 |
| PleI | GAGTC | 1 cut(s) | 346 |
| PluTI | GGCGCC | 1 cut(s) | 183 |
| PpsI | GAGTC | 1 cut(s) | 346 |
| Psp1406I | AACGTT | 1 cut(s) | 516 |
| Psp6I | CCWGG | 3 cut(s) | 280, 285, 535 |
| PspEI | GGTNACC | 1 cut(s) | 22 |
| PspFI | CCCAGC | 2 cut(s) | 345, 380 |
| PspGI | CCWGG | 3 cut(s) | 280, 285, 535 |
| PspN4I | GGNNCC | 5 cut(s) | 17, 181, 207, 298, 511 |
| PspPI | GGNCC | 3 cut(s) | 16, 131, 343 |
| PstI | CTGCAG | 1 cut(s) | 171 |
| PsuI | RGATCY | 1 cut(s) | 48 |
| RsaI | GTAC | 1 cut(s) | 250 |
| RsaNI | GTAC | 1 cut(s) | 249 |
| SatI | GCNGC | 8 cut(s) | 69, 167, 170, 218, 264, 342, 393, 483 |
| Sau3AI | GATC | 2 cut(s) | 48, 84 |
| Sau96I | GGNCC | 3 cut(s) | 16, 131, 343 |
| SchI | GAGTC | 1 cut(s) | 346 |
| ScrFI | CCNGG | 6 cut(s) | 20, 282, 287, 403, 404, 537 |
| SduI | GDGCHC | 1 cut(s) | 301 |
| SetI | ASST | 6 cut(s) | 154, 202, 235, 291, 505, 519 |
| SfaNI | GCATC | 3 cut(s) | 133, 153, 484 |
| SfcI | CTRYAG | 1 cut(s) | 167 |
| SfoI | GGCGCC | 1 cut(s) | 181 |
| SinI | GGWCC | 1 cut(s) | 16 |
| SmaI | CCCGGG | 1 cut(s) | 404 |
| Sse9I | AATT | 1 cut(s) | 326 |
| SspDI | GGCGCC | 1 cut(s) | 179 |
| SspMI | CTAG | 1 cut(s) | 429 |
| StyD4I | CCNGG | 6 cut(s) | 18, 280, 285, 401, 402, 535 |
| StyI | CCWWGG | 2 cut(s) | 225, 499 |
| TaaI | ACNGT | 1 cut(s) | 418 |
| TaiI | ACGT | 1 cut(s) | 519 |
| TaqI | TCGA | 1 cut(s) | 186 |
| TasI | AATT | 1 cut(s) | 326 |
| TauI | GCSGC | 3 cut(s) | 71, 344, 485 |
| TscAI | CASTG | 2 cut(s) | 219, 265 |
| TseFI | GTSAC | 1 cut(s) | 22 |
| TseI | GCWGC | 5 cut(s) | 166, 169, 217, 263, 392 |
| Tsp45I | GTSAC | 1 cut(s) | 22 |
| TspMI | CCCGGG | 1 cut(s) | 402 |
| TspRI | CASTG | 2 cut(s) | 219, 265 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 189 |
| VpaK11BI | GGWCC | 1 cut(s) | 16 |
| XapI | RAATTY | 1 cut(s) | 326 |
| XmaI | CCCGGG | 1 cut(s) | 402 |
| XspI | CTAG | 1 cut(s) | 429 |