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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 121 |
| AccBSI | CCGCTC | 3 cut(s) | 133, 280, 475 |
| AccII | CGCG | 1 cut(s) | 450 |
| AclWI | GGATC | 4 cut(s) | 415, 486, 543, 562 |
| AcuI | CTGAAG | 3 cut(s) | 431, 551, 557 |
| AcyI | GRCGYC | 1 cut(s) | 60 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 69, 242, 394, 474, 532 |
| AgsI | TTSAA | 1 cut(s) | 314 |
| AluBI | AGCT | 3 cut(s) | 330, 358, 409 |
| AluI | AGCT | 3 cut(s) | 330, 358, 409 |
| Alw26I | GTCTC | 3 cut(s) | 179, 190, 505 |
| AlwI | GGATC | 4 cut(s) | 415, 486, 543, 562 |
| Ama87I | CYCGRG | 2 cut(s) | 393, 482 |
| AoxI | GGCC | 2 cut(s) | 206, 232 |
| ApeKI | GCWGC | 2 cut(s) | 73, 358 |
| AspLEI | GCGC | 1 cut(s) | 337 |
| AspS9I | GGNCC | 3 cut(s) | 206, 233, 291 |
| AsuC2I | CCSGG | 2 cut(s) | 394, 395 |
| AsuHPI | GGTGA | 2 cut(s) | 164, 257 |
| AvaI | CYCGRG | 2 cut(s) | 393, 482 |
| AvaII | GGWCC | 1 cut(s) | 291 |
| BanI | GGYRCC | 1 cut(s) | 121 |
| BauI | CACGAG | 1 cut(s) | 128 |
| BbsI | GAAGAC | 1 cut(s) | 182 |
| BbvI | GCAGC | 2 cut(s) | 60, 345 |
| BccI | CCATC | 4 cut(s) | 23, 208, 281, 314 |
| BcnI | CCSGG | 2 cut(s) | 394, 395 |
| BcoDI | GTCTC | 3 cut(s) | 179, 190, 505 |
| BfaI | CTAG | 1 cut(s) | 509 |
| BfmI | CTRYAG | 2 cut(s) | 80, 259 |
| BfoI | RGCGCY | 1 cut(s) | 338 |
| BisI | GCNGC | 4 cut(s) | 74, 209, 359, 451 |
| BlsI | GCNGC | 4 cut(s) | 75, 210, 360, 452 |
| Bme1390I | CCNGG | 2 cut(s) | 394, 395 |
| Bme18I | GGWCC | 1 cut(s) | 291 |
| BmeT110I | CYCGRG | 2 cut(s) | 393, 482 |
| BmgT120I | GGNCC | 3 cut(s) | 206, 233, 291 |
| BmiI | GGNNCC | 4 cut(s) | 123, 207, 235, 292 |
| BmrFI | CCNGG | 2 cut(s) | 394, 395 |
| BmsI | GCATC | 2 cut(s) | 424, 433 |
| BoxI | GACNNNNGTC | 1 cut(s) | 346 |
| BpiI | GAAGAC | 1 cut(s) | 182 |
| BpuMI | CCSGG | 2 cut(s) | 394, 395 |
| BsaHI | GRCGYC | 1 cut(s) | 60 |
| BsaI | GGTCTC | 1 cut(s) | 190 |
| BsaJI | CCNNGG | 3 cut(s) | 392, 393, 448 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 485, 515 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 69, 242, 394, 474, 532 |
| BseDI | CCNNGG | 3 cut(s) | 392, 393, 448 |
| BseGI | GGATG | 2 cut(s) | 292, 448 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 69, 242, 394, 474, 532 |
| BseMII | CTCAG | 1 cut(s) | 34 |
| BseXI | GCAGC | 2 cut(s) | 60, 345 |
| BsgI | GTGCAG | 1 cut(s) | 291 |
| Bsh1236I | CGCG | 1 cut(s) | 450 |
| Bsh1285I | CGRYCG | 1 cut(s) | 67 |
| BshFI | GGCC | 2 cut(s) | 208, 234 |
| BshNI | GGYRCC | 1 cut(s) | 121 |
| BsiEI | CGRYCG | 1 cut(s) | 67 |
| BsiHKCI | CYCGRG | 2 cut(s) | 393, 482 |
| BsiSI | CCGG | 1 cut(s) | 394 |
| BslFI | GGGAC | 1 cut(s) | 304 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 69, 242, 394, 474, 532 |
| BsmAI | GTCTC | 3 cut(s) | 179, 190, 505 |
| BsmBI | CGTCTC | 1 cut(s) | 179 |
| BsmFI | GGGAC | 1 cut(s) | 304 |
| BsnI | GGCC | 2 cut(s) | 208, 234 |
| Bso31I | GGTCTC | 1 cut(s) | 190 |
| BsoBI | CYCGRG | 2 cut(s) | 393, 482 |
| Bsp143I | GATC | 5 cut(s) | 64, 420, 478, 535, 567 |
| BspANI | GGCC | 2 cut(s) | 208, 234 |
| BspCNI | CTCAG | 1 cut(s) | 33 |
| BspFNI | CGCG | 1 cut(s) | 450 |
| BspLI | GGNNCC | 4 cut(s) | 123, 207, 235, 292 |
| BspMAI | CTGCAG | 1 cut(s) | 84 |
| BspPI | GGATC | 4 cut(s) | 415, 486, 543, 562 |
| BspT107I | GGYRCC | 1 cut(s) | 121 |
| BspTNI | GGTCTC | 1 cut(s) | 190 |
| BsrBI | CCGCTC | 3 cut(s) | 133, 280, 475 |
| BssECI | CCNNGG | 3 cut(s) | 392, 393, 448 |
| BssMI | GATC | 5 cut(s) | 64, 420, 478, 535, 567 |
| BssNI | GRCGYC | 1 cut(s) | 60 |
| BssSI | CACGAG | 1 cut(s) | 128 |
| Bst2BI | CACGAG | 1 cut(s) | 128 |
| Bst4CI | ACNGT | 5 cut(s) | 117, 251, 260, 295, 318 |
| Bst6I | CTCTTC | 2 cut(s) | 213, 411 |
| BstACI | GRCGYC | 1 cut(s) | 60 |
| BstC8I | GCNNGC | 4 cut(s) | 213, 274, 278, 448 |
| BstDEI | CTNAG | 3 cut(s) | 20, 549, 555 |
| BstDSI | CCRYGG | 1 cut(s) | 448 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 530 |
| BstF5I | GGATG | 2 cut(s) | 292, 448 |
| BstFNI | CGCG | 1 cut(s) | 450 |
| BstH2I | RGCGCY | 1 cut(s) | 338 |
| BstHHI | GCGC | 1 cut(s) | 337 |
| BstKTI | GATC | 5 cut(s) | 67, 423, 481, 538, 570 |
| BstMAI | GTCTC | 3 cut(s) | 179, 190, 505 |
| BstMBI | GATC | 5 cut(s) | 64, 420, 478, 535, 567 |
| BstMCI | CGRYCG | 1 cut(s) | 67 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 79, 130, 147, 231, 443, 551 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 346 |
| BstSCI | CCNGG | 2 cut(s) | 392, 393 |
| BstSFI | CTRYAG | 2 cut(s) | 80, 259 |
| BstUI | CGCG | 1 cut(s) | 450 |
| BstV1I | GCAGC | 2 cut(s) | 60, 345 |
| BstV2I | GAAGAC | 1 cut(s) | 182 |
| BstX2I | RGATCY | 3 cut(s) | 420, 478, 567 |
| BstYI | RGATCY | 3 cut(s) | 420, 478, 567 |
| BsuRI | GGCC | 2 cut(s) | 208, 234 |
| BtgI | CCRYGG | 1 cut(s) | 448 |
| BtsCI | GGATG | 2 cut(s) | 292, 448 |
| BtsIMutI | CAGTG | 2 cut(s) | 28, 455 |
| Cac8I | GCNNGC | 4 cut(s) | 213, 274, 278, 448 |
| CfoI | GCGC | 1 cut(s) | 337 |
| Cfr13I | GGNCC | 3 cut(s) | 206, 233, 291 |
| Cfr42I | CCGCGG | 1 cut(s) | 451 |
| Cfr9I | CCCGGG | 1 cut(s) | 393 |
| CseI | GACGC | 2 cut(s) | 68, 199 |
| CviAII | CATG | 3 cut(s) | 40, 362, 497 |
| DdeI | CTNAG | 3 cut(s) | 20, 549, 555 |
| DpnI | GATC | 5 cut(s) | 66, 422, 480, 537, 569 |
| DpnII | GATC | 5 cut(s) | 64, 420, 478, 535, 567 |
| Eam1104I | CTCTTC | 2 cut(s) | 213, 411 |
| EarI | CTCTTC | 2 cut(s) | 213, 411 |
| EciI | GGCGGA | 1 cut(s) | 287 |
| Eco31I | GGTCTC | 1 cut(s) | 190 |
| Eco47I | GGWCC | 1 cut(s) | 291 |
| Eco57I | CTGAAG | 3 cut(s) | 431, 551, 557 |
| Eco88I | CYCGRG | 2 cut(s) | 393, 482 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 530 |
| EcoO109I | RGGNCCY | 1 cut(s) | 233 |
| Esp3I | CGTCTC | 1 cut(s) | 179 |
| FaeI | CATG | 3 cut(s) | 43, 365, 500 |
| FaiI | YATR | 5 cut(s) | 41, 363, 440, 498, 521 |
| FaqI | GGGAC | 1 cut(s) | 304 |
| FatI | CATG | 3 cut(s) | 39, 361, 496 |
| FauI | CCCGC | 4 cut(s) | 43, 244, 455, 468 |
| Fnu4HI | GCNGC | 4 cut(s) | 74, 209, 359, 451 |
| FokI | GGATG | 2 cut(s) | 299, 455 |
| Fsp4HI | GCNGC | 4 cut(s) | 74, 209, 359, 451 |
| FspBI | CTAG | 1 cut(s) | 509 |
| GlaI | GCGC | 1 cut(s) | 336 |
| GluI | GCNGC | 4 cut(s) | 74, 209, 359, 451 |
| HaeII | RGCGCY | 1 cut(s) | 338 |
| HaeIII | GGCC | 2 cut(s) | 208, 234 |
| HapII | CCGG | 1 cut(s) | 394 |
| HgaI | GACGC | 2 cut(s) | 68, 199 |
| HhaI | GCGC | 1 cut(s) | 337 |
| Hin1I | GRCGYC | 1 cut(s) | 60 |
| Hin1II | CATG | 3 cut(s) | 43, 365, 500 |
| Hin6I | GCGC | 1 cut(s) | 335 |
| HinP1I | GCGC | 1 cut(s) | 335 |
| HpaII | CCGG | 1 cut(s) | 394 |
| HphI | GGTGA | 2 cut(s) | 164, 257 |
| Hpy188III | TCNNGA | 1 cut(s) | 482 |
| Hpy99I | CGWCG | 2 cut(s) | 193, 356 |
| HpyAV | CCTTC | 3 cut(s) | 63, 406, 526 |
| HpyCH4III | ACNGT | 5 cut(s) | 117, 251, 260, 295, 318 |
| HpyCH4V | TGCA | 4 cut(s) | 82, 141, 272, 361 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 79, 130, 147, 231, 443, 551 |
| HpyF3I | CTNAG | 3 cut(s) | 20, 549, 555 |
| Hsp92I | GRCGYC | 1 cut(s) | 60 |
| Hsp92II | CATG | 3 cut(s) | 43, 365, 500 |
| HspAI | GCGC | 1 cut(s) | 335 |
| KspI | CCGCGG | 1 cut(s) | 451 |
| Kzo9I | GATC | 5 cut(s) | 64, 420, 478, 535, 567 |
| LmnI | GCTCC | 1 cut(s) | 85 |
| Lsp1109I | GCAGC | 2 cut(s) | 60, 345 |
| LweI | GCATC | 2 cut(s) | 424, 433 |
| MaeI | CTAG | 1 cut(s) | 509 |
| MaeIII | GTNAC | 2 cut(s) | 152, 245 |
| MalI | GATC | 5 cut(s) | 66, 422, 480, 537, 569 |
| MbiI | CCGCTC | 3 cut(s) | 133, 280, 475 |
| MboI | GATC | 5 cut(s) | 64, 420, 478, 535, 567 |
| MboII | GAAGA | 5 cut(s) | 156, 184, 187, 230, 428 |
| MflI | RGATCY | 3 cut(s) | 420, 478, 567 |
| MmeI | TCCRAC | 1 cut(s) | 264 |
| MnlI | CCTC | 3 cut(s) | 174, 214, 260 |
| MslI | CAYNNNNRTG | 1 cut(s) | 21 |
| MspA1I | CMGCKG | 2 cut(s) | 409, 450 |
| MspI | CCGG | 1 cut(s) | 394 |
| MspR9I | CCNGG | 2 cut(s) | 394, 395 |
| MvnI | CGCG | 1 cut(s) | 450 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 79, 130, 147, 231, 443, 551 |
| NciI | CCSGG | 2 cut(s) | 394, 395 |
| NdeII | GATC | 5 cut(s) | 64, 420, 478, 535, 567 |
| NlaIII | CATG | 3 cut(s) | 43, 365, 500 |
| NlaIV | GGNNCC | 4 cut(s) | 123, 207, 235, 292 |
| NmeAIII | GCCGAG | 1 cut(s) | 311 |
| NmuCI | GTSAC | 2 cut(s) | 152, 245 |
| PaeR7I | CTCGAG | 1 cut(s) | 482 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 185, 489 |
| PflFI | GACNNNGTC | 1 cut(s) | 497 |
| PkrI | GCNGC | 4 cut(s) | 75, 210, 360, 452 |
| Ple19I | CGATCG | 1 cut(s) | 67 |
| PshAI | GACNNNNGTC | 1 cut(s) | 346 |
| PspN4I | GGNNCC | 4 cut(s) | 123, 207, 235, 292 |
| PspPI | GGNCC | 3 cut(s) | 206, 233, 291 |
| PstI | CTGCAG | 1 cut(s) | 84 |
| PsuI | RGATCY | 3 cut(s) | 420, 478, 567 |
| PsyI | GACNNNGTC | 1 cut(s) | 497 |
| PvuI | CGATCG | 1 cut(s) | 67 |
| PvuII | CAGCTG | 1 cut(s) | 409 |
| RseI | CAYNNNNRTG | 1 cut(s) | 21 |
| SacII | CCGCGG | 1 cut(s) | 451 |
| SatI | GCNGC | 4 cut(s) | 74, 209, 359, 451 |
| Sau3AI | GATC | 5 cut(s) | 64, 420, 478, 535, 567 |
| Sau96I | GGNCC | 3 cut(s) | 206, 233, 291 |
| SbfI | CCTGCAGG | 1 cut(s) | 84 |
| ScrFI | CCNGG | 2 cut(s) | 394, 395 |
| SdaI | CCTGCAGG | 1 cut(s) | 84 |
| SetI | ASST | 5 cut(s) | 247, 271, 332, 360, 411 |
| SfaNI | GCATC | 2 cut(s) | 424, 433 |
| SfcI | CTRYAG | 2 cut(s) | 80, 259 |
| Sfr274I | CTCGAG | 1 cut(s) | 482 |
| Sfr303I | CCGCGG | 1 cut(s) | 451 |
| SgrBI | CCGCGG | 1 cut(s) | 451 |
| SinI | GGWCC | 1 cut(s) | 291 |
| SlaI | CTCGAG | 1 cut(s) | 482 |
| SmaI | CCCGGG | 1 cut(s) | 395 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 21 |
| SmlI | CTYRAG | 1 cut(s) | 482 |
| SmoI | CTYRAG | 1 cut(s) | 482 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 84 |
| SspMI | CTAG | 1 cut(s) | 509 |
| StyD4I | CCNGG | 2 cut(s) | 392, 393 |
| TaaI | ACNGT | 5 cut(s) | 117, 251, 260, 295, 318 |
| TaqI | TCGA | 3 cut(s) | 67, 354, 483 |
| TauI | GCSGC | 2 cut(s) | 211, 453 |
| TscAI | CASTG | 2 cut(s) | 28, 462 |
| TseFI | GTSAC | 2 cut(s) | 152, 245 |
| TseI | GCWGC | 2 cut(s) | 73, 358 |
| Tsp45I | GTSAC | 2 cut(s) | 152, 245 |
| TspDTI | ATGAA | 1 cut(s) | 185 |
| TspGWI | ACGGA | 1 cut(s) | 340 |
| TspMI | CCCGGG | 1 cut(s) | 393 |
| TspRI | CASTG | 2 cut(s) | 28, 462 |
| Tth111I | GACNNNGTC | 1 cut(s) | 497 |
| VpaK11BI | GGWCC | 1 cut(s) | 291 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 530 |
| XhoI | CTCGAG | 1 cut(s) | 482 |
| XmaI | CCCGGG | 1 cut(s) | 393 |
| XspI | CTAG | 1 cut(s) | 509 |