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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 12 |
| Acc36I | ACCTGC | 3 cut(s) | 688, 939, 1719 |
| Acc65I | GGTACC | 1 cut(s) | 776 |
| AccB1I | GGYRCC | 7 cut(s) | 323, 511, 776, 1264, 1316, 2105, 2210 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 576, 2115, 2242 |
| AccBSI | CCGCTC | 4 cut(s) | 1534, 1672, 1825, 2304 |
| AccI | GTMKAC | 2 cut(s) | 333, 1571 |
| AccII | CGCG | 5 cut(s) | 172, 222, 1303, 1381, 1788 |
| AccIII | TCCGGA | 2 cut(s) | 38, 175 |
| AclWI | GGATC | 3 cut(s) | 49, 168, 439 |
| AcoI | YGGCCR | 5 cut(s) | 3, 1269, 1998, 2076, 2229 |
| AcsI | RAATTY | 3 cut(s) | 73, 181, 525 |
| AcuI | CTGAAG | 6 cut(s) | 398, 1579, 1895, 1994, 2073, 2358 |
| AcyI | GRCGYC | 5 cut(s) | 9, 1029, 1265, 1750, 2106 |
| AdeI | CACNNNGTG | 1 cut(s) | 1280 |
| AfaI | GTAC | 4 cut(s) | 778, 1085, 2036, 2176 |
| AfeI | AGCGCT | 1 cut(s) | 61 |
| AflIII | ACRYGT | 1 cut(s) | 48 |
| AgsI | TTSAA | 4 cut(s) | 524, 1703, 1904, 2207 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 1350, 2268 |
| AjiI | CACGTC | 2 cut(s) | 1690, 1741 |
| AjnI | CCWGG | 8 cut(s) | 489, 1071, 1215, 1360, 1722, 2194, 2226, 2241 |
| AluBI | AGCT | 6 cut(s) | 345, 1132, 1462, 1678, 2159, 2321 |
| AluI | AGCT | 6 cut(s) | 345, 1132, 1462, 1678, 2159, 2321 |
| Alw21I | GWGCWC | 3 cut(s) | 169, 474, 2074 |
| Alw26I | GTCTC | 5 cut(s) | 891, 1809, 1866, 2255, 2325 |
| Alw44I | GTGCAC | 2 cut(s) | 165, 470 |
| AlwI | GGATC | 3 cut(s) | 49, 168, 439 |
| Ama87I | CYCGRG | 4 cut(s) | 1453, 1662, 2218, 2280 |
| Aor13HI | TCCGGA | 2 cut(s) | 38, 175 |
| Aor51HI | AGCGCT | 1 cut(s) | 61 |
| ApaLI | GTGCAC | 2 cut(s) | 165, 470 |
| ApoI | RAATTY | 3 cut(s) | 73, 181, 525 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1908 |
| Asp718I | GGTACC | 1 cut(s) | 776 |
| AspS9I | GGNCC | 9 cut(s) | 457, 629, 819, 1120, 1352, 1364, 1403, 1720, 2286 |
| AsuC2I | CCSGG | 5 cut(s) | 399, 1008, 1124, 1663, 1664 |
| AsuHPI | GGTGA | 5 cut(s) | 1208, 1241, 1514, 1514, 1970 |
| AsuNHI | GCTAGC | 1 cut(s) | 341 |
| AvaI | CYCGRG | 4 cut(s) | 1453, 1662, 2218, 2280 |
| AvaII | GGWCC | 6 cut(s) | 629, 819, 1120, 1352, 1403, 2286 |
| BaeGI | GKGCMC | 3 cut(s) | 169, 474, 1614 |
| BalI | TGGCCA | 1 cut(s) | 2078 |
| BanI | GGYRCC | 7 cut(s) | 323, 511, 776, 1264, 1316, 2105, 2210 |
| BauI | CACGAG | 3 cut(s) | 473, 987, 1631 |
| BbsI | GAAGAC | 2 cut(s) | 938, 1115 |
| Bbv12I | GWGCWC | 3 cut(s) | 169, 474, 2074 |
| BbvCI | CCTCAGC | 1 cut(s) | 1980 |
| BccI | CCATC | 3 cut(s) | 875, 1194, 2243 |
| BceAI | ACGGC | 9 cut(s) | 337, 350, 452, 1008, 1229, 1292, 1562, 1617, 1964 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 313, 347, 1400, 1434, 1754, 1788 |
| BciT130I | CCWGG | 8 cut(s) | 491, 1073, 1217, 1362, 1724, 2196, 2228, 2243 |
| BciVI | GTATCC | 1 cut(s) | 286 |
| BcnI | CCSGG | 5 cut(s) | 399, 1008, 1124, 1663, 1664 |
| BcoDI | GTCTC | 5 cut(s) | 891, 1809, 1866, 2255, 2325 |
| BfaI | CTAG | 5 cut(s) | 186, 342, 893, 1952, 2258 |
| BfmI | CTRYAG | 3 cut(s) | 131, 346, 2093 |
| BfoI | RGCGCY | 6 cut(s) | 63, 728, 1139, 1268, 2048, 2109 |
| BfuAI | ACCTGC | 3 cut(s) | 688, 939, 1719 |
| BfuI | GTATCC | 1 cut(s) | 286 |
| BlpI | GCTNAGC | 1 cut(s) | 1139 |
| BmcAI | AGTACT | 1 cut(s) | 2176 |
| Bme18I | GGWCC | 6 cut(s) | 629, 819, 1120, 1352, 1403, 2286 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 1350, 2268 |
| BmeT110I | CYCGRG | 4 cut(s) | 1453, 1662, 2218, 2280 |
| BmgBI | CACGTC | 2 cut(s) | 1690, 1741 |
| BmgT120I | GGNCC | 9 cut(s) | 457, 629, 819, 1120, 1352, 1364, 1403, 1720, 2286 |
| BmrI | ACTGGG | 3 cut(s) | 775, 2125, 2262 |
| BmsI | GCATC | 9 cut(s) | 402, 576, 1347, 1762, 1771, 1873, 2079, 2121, 2135 |
| BmtI | GCTAGC | 1 cut(s) | 345 |
| BmuI | ACTGGG | 3 cut(s) | 775, 2125, 2262 |
| BoxI | GACNNNNGTC | 1 cut(s) | 942 |
| BpiI | GAAGAC | 2 cut(s) | 938, 1115 |
| BplI | GAGNNNNNCTC | 6 cut(s) | 425, 457, 1436, 1468, 1451, 1483 |
| BpmI | CTGGAG | 1 cut(s) | 2349 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1679, 1980 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1139 |
| BpuEI | CTTGAG | 1 cut(s) | 766 |
| BpuMI | CCSGG | 5 cut(s) | 399, 1008, 1124, 1663, 1664 |
| Bsa29I | ATCGAT | 1 cut(s) | 2129 |
| BsaHI | GRCGYC | 5 cut(s) | 9, 1029, 1265, 1750, 2106 |
| BsaI | GGTCTC | 2 cut(s) | 1866, 2255 |
| BsaWI | WCCGGW | 2 cut(s) | 38, 175 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 824, 854, 1399, 1429 |
| Bse118I | RCCGGY | 5 cut(s) | 372, 1267, 1875, 2066, 2134 |
| Bse1I | ACTGG | 8 cut(s) | 669, 770, 1205, 1231, 1375, 2120, 2147, 2268 |
| BseAI | TCCGGA | 2 cut(s) | 38, 175 |
| BseBI | CCWGG | 8 cut(s) | 491, 1073, 1217, 1362, 1724, 2196, 2228, 2243 |
| BseCI | ATCGAT | 1 cut(s) | 2129 |
| BseGI | GGATG | 7 cut(s) | 390, 867, 1786, 1888, 2254, 2276, 2308 |
| BseMII | CTCAG | 5 cut(s) | 698, 1047, 1118, 1140, 1971 |
| BseNI | ACTGG | 8 cut(s) | 669, 770, 1205, 1231, 1375, 2120, 2147, 2268 |
| BsePI | GCGCGC | 1 cut(s) | 1301 |
| BseRI | GAGGAG | 2 cut(s) | 446, 2045 |
| BseSI | GKGCMC | 3 cut(s) | 169, 474, 1614 |
| BseX3I | CGGCCG | 1 cut(s) | 1998 |
| BseYI | CCCAGC | 4 cut(s) | 263, 957, 1091, 1537 |
| BsgI | GTGCAG | 3 cut(s) | 267, 635, 1613 |
| Bsh1236I | CGCG | 5 cut(s) | 172, 222, 1303, 1381, 1788 |
| Bsh1285I | CGRYCG | 3 cut(s) | 1410, 2001, 2139 |
| BshNI | GGYRCC | 7 cut(s) | 323, 511, 776, 1264, 1316, 2105, 2210 |
| BshVI | ATCGAT | 1 cut(s) | 2129 |
| BsiEI | CGRYCG | 3 cut(s) | 1410, 2001, 2139 |
| BsiHKAI | GWGCWC | 3 cut(s) | 169, 474, 2074 |
| BsiHKCI | CYCGRG | 4 cut(s) | 1453, 1662, 2218, 2280 |
| BslFI | GGGAC | 3 cut(s) | 161, 1846, 2256 |
| BsmAI | GTCTC | 5 cut(s) | 891, 1809, 1866, 2255, 2325 |
| BsmBI | CGTCTC | 2 cut(s) | 891, 2325 |
| BsmFI | GGGAC | 3 cut(s) | 161, 1846, 2256 |
| BsmI | GAATGC | 1 cut(s) | 242 |
| Bso31I | GGTCTC | 2 cut(s) | 1866, 2255 |
| BsoBI | CYCGRG | 4 cut(s) | 1453, 1662, 2218, 2280 |
| Bsp1286I | GDGCHC | 4 cut(s) | 169, 474, 1614, 2074 |
| Bsp13I | TCCGGA | 2 cut(s) | 38, 175 |
| Bsp143I | GATC | 5 cut(s) | 41, 160, 444, 735, 973 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1139 |
| Bsp19I | CCATGG | 1 cut(s) | 1044 |
| BspCNI | CTCAG | 5 cut(s) | 699, 1048, 1117, 1141, 1972 |
| BspDI | ATCGAT | 1 cut(s) | 2129 |
| BspEI | TCCGGA | 2 cut(s) | 38, 175 |
| BspFNI | CGCG | 5 cut(s) | 172, 222, 1303, 1381, 1788 |
| BspMAI | CTGCAG | 1 cut(s) | 2097 |
| BspMI | ACCTGC | 3 cut(s) | 688, 939, 1719 |
| BspOI | GCTAGC | 1 cut(s) | 345 |
| BspPI | GGATC | 3 cut(s) | 49, 168, 439 |
| BspQI | GCTCTTC | 1 cut(s) | 219 |
| BspT107I | GGYRCC | 7 cut(s) | 323, 511, 776, 1264, 1316, 2105, 2210 |
| BspTNI | GGTCTC | 2 cut(s) | 1866, 2255 |
| BsrBI | CCGCTC | 4 cut(s) | 1534, 1672, 1825, 2304 |
| BsrFI | RCCGGY | 5 cut(s) | 372, 1267, 1875, 2066, 2134 |
| BsrI | ACTGG | 8 cut(s) | 669, 770, 1205, 1231, 1375, 2120, 2147, 2268 |
| BssAI | RCCGGY | 5 cut(s) | 372, 1267, 1875, 2066, 2134 |
| BssHII | GCGCGC | 1 cut(s) | 1301 |
| BssMI | GATC | 5 cut(s) | 41, 160, 444, 735, 973 |
| BssNI | GRCGYC | 5 cut(s) | 9, 1029, 1265, 1750, 2106 |
| BssSI | CACGAG | 3 cut(s) | 473, 987, 1631 |
| BssT1I | CCWWGG | 4 cut(s) | 682, 718, 1044, 1758 |
| Bst2BI | CACGAG | 3 cut(s) | 473, 987, 1631 |
| Bst2UI | CCWGG | 8 cut(s) | 491, 1073, 1217, 1362, 1724, 2196, 2228, 2243 |
| Bst4CI | ACNGT | 5 cut(s) | 144, 427, 637, 1114, 1502 |
| Bst6I | CTCTTC | 1 cut(s) | 219 |
| BstACI | GRCGYC | 5 cut(s) | 9, 1029, 1265, 1750, 2106 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1781 |
| BstDEI | CTNAG | 7 cut(s) | 707, 1056, 1104, 1139, 1149, 1679, 1980 |
| BstDSI | CCRYGG | 3 cut(s) | 143, 1044, 1786 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1757 |
| BstF5I | GGATG | 7 cut(s) | 390, 867, 1786, 1888, 2254, 2276, 2308 |
| BstFNI | CGCG | 5 cut(s) | 172, 222, 1303, 1381, 1788 |
| BstH2I | RGCGCY | 6 cut(s) | 63, 728, 1139, 1268, 2048, 2109 |
| BstKTI | GATC | 5 cut(s) | 44, 163, 447, 738, 976 |
| BstMAI | GTCTC | 5 cut(s) | 891, 1809, 1866, 2255, 2325 |
| BstMBI | GATC | 5 cut(s) | 41, 160, 444, 735, 973 |
| BstMCI | CGRYCG | 3 cut(s) | 1410, 2001, 2139 |
| BstNI | CCWGG | 8 cut(s) | 491, 1073, 1217, 1362, 1724, 2196, 2228, 2243 |
| BstNSI | RCATGY | 1 cut(s) | 52 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 942 |
| BstSFI | CTRYAG | 3 cut(s) | 131, 346, 2093 |
| BstSLI | GKGCMC | 3 cut(s) | 169, 474, 1614 |
| BstUI | CGCG | 5 cut(s) | 172, 222, 1303, 1381, 1788 |
| BstV2I | GAAGAC | 2 cut(s) | 938, 1115 |
| BstX2I | RGATCY | 1 cut(s) | 41 |
| BstYI | RGATCY | 1 cut(s) | 41 |
| BstZI | CGGCCG | 1 cut(s) | 1998 |
| Bsu15I | ATCGAT | 1 cut(s) | 2129 |
| BsuI | GTATCC | 1 cut(s) | 286 |
| BsuTUI | ATCGAT | 1 cut(s) | 2129 |
| BtgI | CCRYGG | 3 cut(s) | 143, 1044, 1786 |
| BtgZI | GCGATG | 1 cut(s) | 608 |
| BtrI | CACGTC | 2 cut(s) | 1690, 1741 |
| BtsCI | GGATG | 7 cut(s) | 390, 867, 1786, 1888, 2254, 2276, 2308 |
| BtsI | GCAGTG | 3 cut(s) | 34, 116, 1782 |
| BtsIMutI | CAGTG | 6 cut(s) | 34, 116, 432, 1368, 1782, 2154 |
| BveI | ACCTGC | 3 cut(s) | 688, 939, 1719 |
| CciNI | GCGGCCGC | 1 cut(s) | 1998 |
| Cfr10I | RCCGGY | 5 cut(s) | 372, 1267, 1875, 2066, 2134 |
| Cfr13I | GGNCC | 9 cut(s) | 457, 629, 819, 1120, 1352, 1364, 1403, 1720, 2286 |
| Cfr42I | CCGCGG | 1 cut(s) | 1789 |
| Cfr9I | CCCGGG | 1 cut(s) | 1662 |
| ClaI | ATCGAT | 1 cut(s) | 2129 |
| CpoI | CGGWCCG | 1 cut(s) | 629 |
| CseI | GACGC | 6 cut(s) | 80, 161, 404, 1037, 1758, 2342 |
| Csp6I | GTAC | 4 cut(s) | 777, 1084, 2035, 2175 |
| CspI | CGGWCCG | 1 cut(s) | 629 |
| CviQI | GTAC | 4 cut(s) | 777, 1084, 2035, 2175 |
| DdeI | CTNAG | 7 cut(s) | 707, 1056, 1104, 1139, 1149, 1679, 1980 |
| DinI | GGCGCC | 2 cut(s) | 1266, 2107 |
| DpnI | GATC | 5 cut(s) | 43, 162, 446, 737, 975 |
| DpnII | GATC | 5 cut(s) | 41, 160, 444, 735, 973 |
| DraIII | CACNNNGTG | 1 cut(s) | 1280 |
| DriI | GACNNNNNGTC | 2 cut(s) | 1350, 2268 |
| EaeI | YGGCCR | 5 cut(s) | 3, 1269, 1998, 2076, 2229 |
| EagI | CGGCCG | 1 cut(s) | 1998 |
| Eam1104I | CTCTTC | 1 cut(s) | 219 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 1350, 2268 |
| EarI | CTCTTC | 1 cut(s) | 219 |
| EciI | GGCGGA | 8 cut(s) | 408, 476, 656, 993, 1661, 1751, 2151, 2261 |
| EclXI | CGGCCG | 1 cut(s) | 1998 |
| Eco130I | CCWWGG | 4 cut(s) | 682, 718, 1044, 1758 |
| Eco147I | AGGCCT | 1 cut(s) | 1698 |
| Eco31I | GGTCTC | 2 cut(s) | 1866, 2255 |
| Eco47I | GGWCC | 6 cut(s) | 629, 819, 1120, 1352, 1403, 2286 |
| Eco47III | AGCGCT | 1 cut(s) | 61 |
| Eco52I | CGGCCG | 1 cut(s) | 1998 |
| Eco57I | CTGAAG | 6 cut(s) | 398, 1579, 1895, 1994, 2073, 2358 |
| Eco88I | CYCGRG | 4 cut(s) | 1453, 1662, 2218, 2280 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1757 |
| EcoRI | GAATTC | 1 cut(s) | 181 |
| EcoRII | CCWGG | 8 cut(s) | 489, 1071, 1215, 1360, 1722, 2194, 2226, 2241 |
| EcoT14I | CCWWGG | 4 cut(s) | 682, 718, 1044, 1758 |
| EgeI | GGCGCC | 2 cut(s) | 1266, 2107 |
| EheI | GGCGCC | 2 cut(s) | 1266, 2107 |
| ErhI | CCWWGG | 4 cut(s) | 682, 718, 1044, 1758 |
| Esp3I | CGTCTC | 2 cut(s) | 891, 2325 |
| FaqI | GGGAC | 3 cut(s) | 161, 1846, 2256 |
| FauI | CCCGC | 8 cut(s) | 448, 513, 808, 1374, 1665, 1793, 1908, 2365 |
| FblI | GTMKAC | 2 cut(s) | 333, 1571 |
| FokI | GGATG | 7 cut(s) | 397, 854, 1793, 1895, 2261, 2263, 2295 |
| FspBI | CTAG | 5 cut(s) | 186, 342, 893, 1952, 2258 |
| GsaI | CCCAGC | 4 cut(s) | 267, 961, 1095, 1541 |
| GsuI | CTGGAG | 1 cut(s) | 2349 |
| HaeII | RGCGCY | 6 cut(s) | 63, 728, 1139, 1268, 2048, 2109 |
| HgaI | GACGC | 6 cut(s) | 80, 161, 404, 1037, 1758, 2342 |
| Hin1I | GRCGYC | 5 cut(s) | 9, 1029, 1265, 1750, 2106 |
| HincII | GTYRAC | 4 cut(s) | 334, 370, 1572, 1582 |
| HindII | GTYRAC | 4 cut(s) | 334, 370, 1572, 1582 |
| HindIII | AAGCTT | 1 cut(s) | 2319 |
| HphI | GGTGA | 5 cut(s) | 1208, 1241, 1514, 1514, 1970 |
| Hpy166II | GTNNAC | 8 cut(s) | 167, 334, 370, 472, 676, 1120, 1572, 1582 |
| Hpy188III | TCNNGA | 6 cut(s) | 39, 176, 186, 739, 1036, 2280 |
| Hpy8I | GTNNAC | 8 cut(s) | 167, 334, 370, 472, 676, 1120, 1572, 1582 |
| Hpy99I | CGWCG | 8 cut(s) | 11, 14, 335, 338, 629, 841, 1625, 1752 |
| HpyCH4III | ACNGT | 5 cut(s) | 144, 427, 637, 1114, 1502 |
| HpyCH4IV | ACGT | 6 cut(s) | 9, 113, 150, 839, 1689, 1740 |
| HpyF3I | CTNAG | 7 cut(s) | 707, 1056, 1104, 1139, 1149, 1679, 1980 |
| HpySE526I | ACGT | 6 cut(s) | 9, 113, 150, 839, 1689, 1740 |
| Hsp92I | GRCGYC | 5 cut(s) | 9, 1029, 1265, 1750, 2106 |
| KasI | GGCGCC | 2 cut(s) | 1264, 2105 |
| Kpn2I | TCCGGA | 2 cut(s) | 38, 175 |
| KpnI | GGTACC | 1 cut(s) | 780 |
| KroI | GCCGGC | 1 cut(s) | 1267 |
| KroNI | GCCGGC | 1 cut(s) | 1269 |
| KspI | CCGCGG | 1 cut(s) | 1789 |
| Kzo9I | GATC | 5 cut(s) | 41, 160, 444, 735, 973 |
| LguI | GCTCTTC | 1 cut(s) | 219 |
| LweI | GCATC | 9 cut(s) | 402, 576, 1347, 1762, 1771, 1873, 2079, 2121, 2135 |
| MaeI | CTAG | 5 cut(s) | 186, 342, 893, 1952, 2258 |
| MaeII | ACGT | 6 cut(s) | 9, 113, 150, 839, 1689, 1740 |
| MaeIII | GTNAC | 6 cut(s) | 114, 280, 496, 926, 1025, 1196 |
| MalI | GATC | 5 cut(s) | 43, 162, 446, 737, 975 |
| MbiI | CCGCTC | 4 cut(s) | 1534, 1672, 1825, 2304 |
| MboI | GATC | 5 cut(s) | 41, 160, 444, 735, 973 |
| MboII | GAAGA | 5 cut(s) | 236, 938, 1120, 1386, 1399 |
| MflI | RGATCY | 1 cut(s) | 41 |
| MhlI | GDGCHC | 4 cut(s) | 169, 474, 1614, 2074 |
| MlsI | TGGCCA | 1 cut(s) | 2078 |
| MluCI | AATT | 8 cut(s) | 73, 181, 525, 846, 1066, 1337, 1560, 1835 |
| MluNI | TGGCCA | 1 cut(s) | 2078 |
| Mly113I | GGCGCC | 2 cut(s) | 1265, 2106 |
| MlyI | GAGTC | 7 cut(s) | 77, 434, 718, 1460, 1658, 1928, 2021 |
| MmeI | TCCRAC | 5 cut(s) | 834, 846, 1314, 1430, 2313 |
| Mox20I | TGGCCA | 1 cut(s) | 2078 |
| MroI | TCCGGA | 2 cut(s) | 38, 175 |
| MroNI | GCCGGC | 1 cut(s) | 1267 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1908 |
| MscI | TGGCCA | 1 cut(s) | 2078 |
| MseI | TTAA | 2 cut(s) | 849, 1944 |
| Msp20I | TGGCCA | 1 cut(s) | 2078 |
| Mva1269I | GAATGC | 1 cut(s) | 242 |
| MvaI | CCWGG | 8 cut(s) | 491, 1073, 1217, 1362, 1724, 2196, 2228, 2243 |
| MvnI | CGCG | 5 cut(s) | 172, 222, 1303, 1381, 1788 |
| NaeI | GCCGGC | 1 cut(s) | 1269 |
| NarI | GGCGCC | 2 cut(s) | 1265, 2106 |
| NciI | CCSGG | 5 cut(s) | 399, 1008, 1124, 1663, 1664 |
| NcoI | CCATGG | 1 cut(s) | 1044 |
| NdeII | GATC | 5 cut(s) | 41, 160, 444, 735, 973 |
| NgoMIV | GCCGGC | 1 cut(s) | 1267 |
| NheI | GCTAGC | 1 cut(s) | 341 |
| NmeAIII | GCCGAG | 2 cut(s) | 1510, 1963 |
| NmuCI | GTSAC | 4 cut(s) | 114, 496, 1025, 1196 |
| NotI | GCGGCCGC | 1 cut(s) | 1998 |
| NspI | RCATGY | 1 cut(s) | 52 |
| PaeR7I | CTCGAG | 1 cut(s) | 1453 |
| PasI | CCCWGGG | 1 cut(s) | 1723 |
| PauI | GCGCGC | 1 cut(s) | 1301 |
| PceI | AGGCCT | 1 cut(s) | 1698 |
| PciI | ACATGT | 1 cut(s) | 48 |
| PciSI | GCTCTTC | 1 cut(s) | 219 |
| PcsI | WCGNNNNNNNCGW | 4 cut(s) | 92, 169, 327, 1629 |
| PctI | GAATGC | 1 cut(s) | 242 |
| PdiI | GCCGGC | 1 cut(s) | 1269 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1908 |
| PfeI | GAWTC | 5 cut(s) | 35, 299, 752, 922, 1076 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 576, 2115, 2242 |
| PfoI | TCCNGGA | 1 cut(s) | 1071 |
| PleI | GAGTC | 7 cut(s) | 77, 434, 717, 1460, 1657, 1927, 2020 |
| PluTI | GGCGCC | 2 cut(s) | 1268, 2109 |
| PpsI | GAGTC | 7 cut(s) | 77, 434, 717, 1460, 1657, 1927, 2020 |
| PscI | ACATGT | 1 cut(s) | 48 |
| PshAI | GACNNNNGTC | 1 cut(s) | 942 |
| Psp6I | CCWGG | 8 cut(s) | 489, 1071, 1215, 1360, 1722, 2194, 2226, 2241 |
| PspFI | CCCAGC | 4 cut(s) | 263, 957, 1091, 1537 |
| PspGI | CCWGG | 8 cut(s) | 489, 1071, 1215, 1360, 1722, 2194, 2226, 2241 |
| PspPI | GGNCC | 9 cut(s) | 457, 629, 819, 1120, 1352, 1364, 1403, 1720, 2286 |
| PspXI | VCTCGAGB | 1 cut(s) | 1453 |
| PstI | CTGCAG | 1 cut(s) | 2097 |
| PsuI | RGATCY | 1 cut(s) | 41 |
| PteI | GCGCGC | 1 cut(s) | 1301 |
| RsaI | GTAC | 4 cut(s) | 778, 1085, 2036, 2176 |
| RsaNI | GTAC | 4 cut(s) | 777, 1084, 2035, 2175 |
| Rsr2I | CGGWCCG | 1 cut(s) | 629 |
| RsrII | CGGWCCG | 1 cut(s) | 629 |
| SacII | CCGCGG | 1 cut(s) | 1789 |
| SalI | GTCGAC | 2 cut(s) | 332, 1570 |
| SapI | GCTCTTC | 1 cut(s) | 219 |
| SaqAI | TTAA | 2 cut(s) | 849, 1944 |
| Sau3AI | GATC | 5 cut(s) | 41, 160, 444, 735, 973 |
| Sau96I | GGNCC | 9 cut(s) | 457, 629, 819, 1120, 1352, 1364, 1403, 1720, 2286 |
| ScaI | AGTACT | 1 cut(s) | 2176 |
| SchI | GAGTC | 7 cut(s) | 77, 434, 718, 1460, 1658, 1928, 2021 |
| SduI | GDGCHC | 4 cut(s) | 169, 474, 1614, 2074 |
| SfaNI | GCATC | 9 cut(s) | 402, 576, 1347, 1762, 1771, 1873, 2079, 2121, 2135 |
| SfcI | CTRYAG | 3 cut(s) | 131, 346, 2093 |
| SfoI | GGCGCC | 2 cut(s) | 1266, 2107 |
| Sfr274I | CTCGAG | 1 cut(s) | 1453 |
| Sfr303I | CCGCGG | 1 cut(s) | 1789 |
| SgrBI | CCGCGG | 1 cut(s) | 1789 |
| SgrDI | CGTCGACG | 1 cut(s) | 332 |
| SinI | GGWCC | 6 cut(s) | 629, 819, 1120, 1352, 1403, 2286 |
| SlaI | CTCGAG | 1 cut(s) | 1453 |
| SmaI | CCCGGG | 1 cut(s) | 1664 |
| SmlI | CTYRAG | 2 cut(s) | 745, 1453 |
| SmoI | CTYRAG | 2 cut(s) | 745, 1453 |
| Sse9I | AATT | 8 cut(s) | 73, 181, 525, 846, 1066, 1337, 1560, 1835 |
| SseBI | AGGCCT | 1 cut(s) | 1698 |
| SspDI | GGCGCC | 2 cut(s) | 1264, 2105 |
| SspMI | CTAG | 5 cut(s) | 186, 342, 893, 1952, 2258 |
| StuI | AGGCCT | 1 cut(s) | 1698 |
| StyI | CCWWGG | 4 cut(s) | 682, 718, 1044, 1758 |
| TaaI | ACNGT | 5 cut(s) | 144, 427, 637, 1114, 1502 |
| TaiI | ACGT | 6 cut(s) | 12, 116, 153, 842, 1692, 1743 |
| TaqI | TCGA | 9 cut(s) | 23, 333, 443, 738, 972, 1454, 1571, 1652, 2129 |
| TaqII | GACCGA | 2 cut(s) | 646, 1424 |
| TasI | AATT | 8 cut(s) | 73, 181, 525, 846, 1066, 1337, 1560, 1835 |
| TatI | WGTACW | 2 cut(s) | 2034, 2174 |
| TfiI | GAWTC | 5 cut(s) | 35, 299, 752, 922, 1076 |
| Tru1I | TTAA | 2 cut(s) | 849, 1944 |
| Tru9I | TTAA | 2 cut(s) | 849, 1944 |
| TscAI | CASTG | 6 cut(s) | 34, 123, 432, 1375, 1782, 2154 |
| TseFI | GTSAC | 4 cut(s) | 114, 496, 1025, 1196 |
| Tsp45I | GTSAC | 4 cut(s) | 114, 496, 1025, 1196 |
| TspDTI | ATGAA | 1 cut(s) | 611 |
| TspGWI | ACGGA | 3 cut(s) | 84, 642, 1609 |
| TspMI | CCCGGG | 1 cut(s) | 1662 |
| TspRI | CASTG | 6 cut(s) | 34, 123, 432, 1375, 1782, 2154 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 576, 2115, 2242 |
| VneI | GTGCAC | 2 cut(s) | 165, 470 |
| VpaK11BI | GGWCC | 6 cut(s) | 629, 819, 1120, 1352, 1403, 2286 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1757 |
| XapI | RAATTY | 3 cut(s) | 73, 181, 525 |
| XbaI | TCTAGA | 1 cut(s) | 185 |
| XceI | RCATGY | 1 cut(s) | 52 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 1187, 1223 |
| XhoI | CTCGAG | 1 cut(s) | 1453 |
| XmaI | CCCGGG | 1 cut(s) | 1662 |
| XmiI | GTMKAC | 2 cut(s) | 333, 1571 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1908 |
| XspI | CTAG | 5 cut(s) | 186, 342, 893, 1952, 2258 |
| ZraI | GACGTC | 1 cut(s) | 10 |
| ZrmI | AGTACT | 1 cut(s) | 2176 |