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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1363 |
| Acc65I | GGTACC | 2 cut(s) | 1319, 1442 |
| AccB1I | GGYRCC | 4 cut(s) | 367, 1226, 1319, 1442 |
| AccBSI | CCGCTC | 4 cut(s) | 430, 676, 868, 997 |
| AccII | CGCG | 4 cut(s) | 717, 909, 957, 1407 |
| AclWI | GGATC | 1 cut(s) | 87 |
| AcoI | YGGCCR | 4 cut(s) | 69, 924, 1056, 1119 |
| AcuI | CTGAAG | 2 cut(s) | 299, 1122 |
| AcyI | GRCGYC | 4 cut(s) | 368, 711, 903, 1227 |
| AfaI | GTAC | 3 cut(s) | 1111, 1321, 1444 |
| AfeI | AGCGCT | 1 cut(s) | 94 |
| AflIII | ACRYGT | 2 cut(s) | 955, 1209 |
| AgsI | TTSAA | 5 cut(s) | 1133, 1141, 1159, 1216, 1517 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1458 |
| AjnI | CCWGG | 1 cut(s) | 1430 |
| AleI | CACNNNNGTG | 2 cut(s) | 27, 135 |
| AluBI | AGCT | 9 cut(s) | 260, 385, 514, 607, 799, 916, 1247, 1313, 1469 |
| AluI | AGCT | 9 cut(s) | 260, 385, 514, 607, 799, 916, 1247, 1313, 1469 |
| Alw21I | GWGCWC | 3 cut(s) | 516, 609, 801 |
| AlwI | GGATC | 1 cut(s) | 87 |
| Ama87I | CYCGRG | 2 cut(s) | 1194, 1470 |
| Aor51HI | AGCGCT | 1 cut(s) | 94 |
| ApaI | GGGCCC | 2 cut(s) | 310, 1195 |
| ApeKI | GCWGC | 8 cut(s) | 95, 493, 586, 778, 1033, 1115, 1178, 1332 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 425, 457 |
| Asp718I | GGTACC | 2 cut(s) | 1319, 1442 |
| AspLEI | GCGC | 6 cut(s) | 95, 238, 252, 370, 1229, 1409 |
| AsuC2I | CCSGG | 5 cut(s) | 76, 499, 592, 784, 1286 |
| AsuHPI | GGTGA | 6 cut(s) | 14, 41, 217, 392, 1091, 1373 |
| AvaI | CYCGRG | 2 cut(s) | 1194, 1470 |
| AvaII | GGWCC | 2 cut(s) | 140, 1476 |
| AxyI | CCTNAGG | 1 cut(s) | 1094 |
| BaeGI | GKGCMC | 2 cut(s) | 310, 1195 |
| BanI | GGYRCC | 4 cut(s) | 367, 1226, 1319, 1442 |
| BanII | GRGCYC | 5 cut(s) | 310, 516, 609, 801, 1195 |
| BbsI | GAAGAC | 2 cut(s) | 350, 1169 |
| Bbv12I | GWGCWC | 3 cut(s) | 516, 609, 801 |
| BbvI | GCAGC | 8 cut(s) | 82, 505, 598, 790, 1045, 1102, 1190, 1344 |
| BccI | CCATC | 4 cut(s) | 29, 935, 1048, 1433 |
| BceAI | ACGGC | 3 cut(s) | 84, 200, 359 |
| BciT130I | CCWGG | 1 cut(s) | 1432 |
| BcnI | CCSGG | 5 cut(s) | 76, 499, 592, 784, 1286 |
| BfaI | CTAG | 1 cut(s) | 386 |
| BfmI | CTRYAG | 1 cut(s) | 989 |
| BfoI | RGCGCY | 5 cut(s) | 96, 239, 253, 371, 1230 |
| BmcAI | AGTACT | 1 cut(s) | 1111 |
| Bme1390I | CCNGG | 6 cut(s) | 76, 499, 592, 784, 1286, 1432 |
| Bme18I | GGWCC | 2 cut(s) | 140, 1476 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1458 |
| BmeT110I | CYCGRG | 2 cut(s) | 1194, 1470 |
| BmrFI | CCNGG | 6 cut(s) | 76, 499, 592, 784, 1286, 1432 |
| BmrI | ACTGGG | 1 cut(s) | 1452 |
| BmsI | GCATC | 1 cut(s) | 111 |
| BmuI | ACTGGG | 1 cut(s) | 1452 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1295 |
| BpiI | GAAGAC | 2 cut(s) | 350, 1169 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 374, 406, 419, 451 |
| BpmI | CTGGAG | 5 cut(s) | 260, 614, 806, 1335, 1439 |
| Bpu10I | CCTNAGC | 4 cut(s) | 515, 608, 800, 1008 |
| BpuMI | CCSGG | 5 cut(s) | 76, 499, 592, 784, 1286 |
| BsaHI | GRCGYC | 4 cut(s) | 368, 711, 903, 1227 |
| BsaI | GGTCTC | 4 cut(s) | 539, 632, 824, 1445 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 276, 306 |
| Bse118I | RCCGGY | 2 cut(s) | 160, 1267 |
| Bse1I | ACTGG | 5 cut(s) | 16, 197, 666, 858, 1458 |
| Bse21I | CCTNAGG | 1 cut(s) | 1094 |
| BseBI | CCWGG | 1 cut(s) | 1432 |
| BseGI | GGATG | 5 cut(s) | 40, 126, 1059, 1402, 1444 |
| BseMII | CTCAG | 6 cut(s) | 77, 252, 529, 622, 814, 1085 |
| BseNI | ACTGG | 5 cut(s) | 16, 197, 666, 858, 1458 |
| BseRI | GAGGAG | 2 cut(s) | 203, 1368 |
| BseSI | GKGCMC | 2 cut(s) | 310, 1195 |
| BseX3I | CGGCCG | 2 cut(s) | 69, 1119 |
| BseXI | GCAGC | 8 cut(s) | 82, 505, 598, 790, 1045, 1102, 1190, 1344 |
| BseYI | CCCAGC | 4 cut(s) | 221, 1072, 1187, 1309 |
| BsgI | GTGCAG | 2 cut(s) | 71, 1052 |
| Bsh1236I | CGCG | 4 cut(s) | 717, 909, 957, 1407 |
| Bsh1285I | CGRYCG | 4 cut(s) | 72, 1122, 1496, 1500 |
| BshNI | GGYRCC | 4 cut(s) | 367, 1226, 1319, 1442 |
| BsiEI | CGRYCG | 4 cut(s) | 72, 1122, 1496, 1500 |
| BsiHKAI | GWGCWC | 3 cut(s) | 516, 609, 801 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1194, 1470 |
| BsiSI | CCGG | 8 cut(s) | 75, 161, 253, 499, 592, 784, 1268, 1286 |
| BslFI | GGGAC | 4 cut(s) | 73, 446, 950, 1265 |
| BsmBI | CGTCTC | 2 cut(s) | 279, 964 |
| BsmFI | GGGAC | 4 cut(s) | 73, 446, 950, 1265 |
| BsmI | GAATGC | 1 cut(s) | 1351 |
| Bso31I | GGTCTC | 4 cut(s) | 539, 632, 824, 1445 |
| BsoBI | CYCGRG | 2 cut(s) | 1194, 1470 |
| Bsp120I | GGGCCC | 2 cut(s) | 306, 1191 |
| Bsp1286I | GDGCHC | 5 cut(s) | 310, 516, 609, 801, 1195 |
| Bsp143I | GATC | 5 cut(s) | 79, 721, 978, 1480, 1493 |
| BspCNI | CTCAG | 6 cut(s) | 76, 253, 528, 621, 813, 1086 |
| BspFNI | CGCG | 4 cut(s) | 717, 909, 957, 1407 |
| BspMAI | CTGCAG | 1 cut(s) | 993 |
| BspPI | GGATC | 1 cut(s) | 87 |
| BspQI | GCTCTTC | 3 cut(s) | 504, 597, 789 |
| BspT107I | GGYRCC | 4 cut(s) | 367, 1226, 1319, 1442 |
| BspTNI | GGTCTC | 4 cut(s) | 539, 632, 824, 1445 |
| BsrBI | CCGCTC | 4 cut(s) | 430, 676, 868, 997 |
| BsrFI | RCCGGY | 2 cut(s) | 160, 1267 |
| BsrI | ACTGG | 5 cut(s) | 16, 197, 666, 858, 1458 |
| BssAI | RCCGGY | 2 cut(s) | 160, 1267 |
| BssMI | GATC | 5 cut(s) | 79, 721, 978, 1480, 1493 |
| BssNI | GRCGYC | 4 cut(s) | 368, 711, 903, 1227 |
| BssT1I | CCWWGG | 3 cut(s) | 25, 687, 879 |
| Bst2UI | CCWGG | 1 cut(s) | 1432 |
| Bst4CI | ACNGT | 2 cut(s) | 49, 411 |
| Bst6I | CTCTTC | 4 cut(s) | 273, 504, 597, 789 |
| BstACI | GRCGYC | 4 cut(s) | 368, 711, 903, 1227 |
| BstDEI | CTNAG | 7 cut(s) | 63, 261, 515, 608, 800, 1008, 1094 |
| BstDSI | CCRYGG | 2 cut(s) | 715, 907 |
| BstEII | GGTNACC | 1 cut(s) | 1084 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 29, 989 |
| BstF5I | GGATG | 5 cut(s) | 40, 126, 1059, 1402, 1444 |
| BstFNI | CGCG | 4 cut(s) | 717, 909, 957, 1407 |
| BstH2I | RGCGCY | 5 cut(s) | 96, 239, 253, 371, 1230 |
| BstHHI | GCGC | 6 cut(s) | 95, 238, 252, 370, 1229, 1409 |
| BstKTI | GATC | 5 cut(s) | 82, 724, 981, 1483, 1496 |
| BstMBI | GATC | 5 cut(s) | 79, 721, 978, 1480, 1493 |
| BstMCI | CGRYCG | 4 cut(s) | 72, 1122, 1496, 1500 |
| BstNI | CCWGG | 1 cut(s) | 1432 |
| BstNSI | RCATGY | 2 cut(s) | 335, 1213 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1295 |
| BstPI | GGTNACC | 1 cut(s) | 1084 |
| BstSCI | CCNGG | 6 cut(s) | 74, 497, 590, 782, 1284, 1430 |
| BstSFI | CTRYAG | 1 cut(s) | 989 |
| BstSLI | GKGCMC | 2 cut(s) | 310, 1195 |
| BstUI | CGCG | 4 cut(s) | 717, 909, 957, 1407 |
| BstV1I | GCAGC | 8 cut(s) | 82, 505, 598, 790, 1045, 1102, 1190, 1344 |
| BstV2I | GAAGAC | 2 cut(s) | 350, 1169 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 137 |
| BstZI | CGGCCG | 2 cut(s) | 69, 1119 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1094 |
| BtgI | CCRYGG | 2 cut(s) | 715, 907 |
| BtsCI | GGATG | 5 cut(s) | 40, 126, 1059, 1402, 1444 |
| BtsIMutI | CAGTG | 2 cut(s) | 204, 1166 |
| CciNI | GCGGCCGC | 1 cut(s) | 1119 |
| CfoI | GCGC | 6 cut(s) | 95, 238, 252, 370, 1229, 1409 |
| Cfr10I | RCCGGY | 2 cut(s) | 160, 1267 |
| Cfr42I | CCGCGG | 2 cut(s) | 718, 910 |
| CseI | GACGC | 4 cut(s) | 719, 911, 946, 1268 |
| Csp6I | GTAC | 3 cut(s) | 1110, 1320, 1443 |
| CviAII | CATG | 5 cut(s) | 332, 467, 560, 752, 1210 |
| CviQI | GTAC | 3 cut(s) | 1110, 1320, 1443 |
| DdeI | CTNAG | 7 cut(s) | 63, 261, 515, 608, 800, 1008, 1094 |
| DinI | GGCGCC | 2 cut(s) | 369, 1228 |
| DpnI | GATC | 5 cut(s) | 81, 723, 980, 1482, 1495 |
| DpnII | GATC | 5 cut(s) | 79, 721, 978, 1480, 1493 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1363 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1458 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1363 |
| EaeI | YGGCCR | 4 cut(s) | 69, 924, 1056, 1119 |
| EagI | CGGCCG | 2 cut(s) | 69, 1119 |
| Eam1104I | CTCTTC | 4 cut(s) | 273, 504, 597, 789 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1458 |
| EarI | CTCTTC | 4 cut(s) | 273, 504, 597, 789 |
| Ecl136II | GAGCTC | 3 cut(s) | 514, 607, 799 |
| EclXI | CGGCCG | 2 cut(s) | 69, 1119 |
| Eco130I | CCWWGG | 3 cut(s) | 25, 687, 879 |
| Eco24I | GRGCYC | 5 cut(s) | 310, 516, 609, 801, 1195 |
| Eco31I | GGTCTC | 4 cut(s) | 539, 632, 824, 1445 |
| Eco47I | GGWCC | 2 cut(s) | 140, 1476 |
| Eco47III | AGCGCT | 1 cut(s) | 94 |
| Eco52I | CGGCCG | 2 cut(s) | 69, 1119 |
| Eco53kI | GAGCTC | 3 cut(s) | 514, 607, 799 |
| Eco57I | CTGAAG | 2 cut(s) | 299, 1122 |
| Eco81I | CCTNAGG | 1 cut(s) | 1094 |
| Eco88I | CYCGRG | 2 cut(s) | 1194, 1470 |
| Eco91I | GGTNACC | 1 cut(s) | 1084 |
| EcoICRI | GAGCTC | 3 cut(s) | 514, 607, 799 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 29, 989 |
| EcoO109I | RGGNCCY | 2 cut(s) | 306, 1191 |
| EcoO65I | GGTNACC | 1 cut(s) | 1084 |
| EcoRII | CCWGG | 1 cut(s) | 1430 |
| EcoT14I | CCWWGG | 3 cut(s) | 25, 687, 879 |
| EcoT38I | GRGCYC | 5 cut(s) | 310, 516, 609, 801, 1195 |
| EgeI | GGCGCC | 2 cut(s) | 369, 1228 |
| EheI | GGCGCC | 2 cut(s) | 369, 1228 |
| ErhI | CCWWGG | 3 cut(s) | 25, 687, 879 |
| Esp3I | CGTCTC | 2 cut(s) | 279, 964 |
| FaeI | CATG | 5 cut(s) | 335, 470, 563, 755, 1213 |
| FaqI | GGGAC | 4 cut(s) | 73, 446, 950, 1265 |
| FatI | CATG | 5 cut(s) | 331, 466, 559, 751, 1209 |
| FokI | GGATG | 5 cut(s) | 47, 133, 1066, 1409, 1451 |
| FriOI | GRGCYC | 5 cut(s) | 310, 516, 609, 801, 1195 |
| FspBI | CTAG | 1 cut(s) | 386 |
| GlaI | GCGC | 6 cut(s) | 94, 237, 251, 369, 1228, 1408 |
| GsaI | CCCAGC | 4 cut(s) | 225, 1076, 1191, 1313 |
| GsuI | CTGGAG | 5 cut(s) | 260, 614, 806, 1335, 1439 |
| HaeII | RGCGCY | 5 cut(s) | 96, 239, 253, 371, 1230 |
| HapII | CCGG | 8 cut(s) | 75, 161, 253, 499, 592, 784, 1268, 1286 |
| HgaI | GACGC | 4 cut(s) | 719, 911, 946, 1268 |
| HhaI | GCGC | 6 cut(s) | 95, 238, 252, 370, 1229, 1409 |
| Hin1I | GRCGYC | 4 cut(s) | 368, 711, 903, 1227 |
| Hin1II | CATG | 5 cut(s) | 335, 470, 563, 755, 1213 |
| Hin6I | GCGC | 6 cut(s) | 93, 236, 250, 368, 1227, 1407 |
| HinP1I | GCGC | 6 cut(s) | 93, 236, 250, 368, 1227, 1407 |
| HindIII | AAGCTT | 1 cut(s) | 1245 |
| HpaII | CCGG | 8 cut(s) | 75, 161, 253, 499, 592, 784, 1268, 1286 |
| HphI | GGTGA | 6 cut(s) | 14, 41, 217, 392, 1091, 1373 |
| Hpy188III | TCNNGA | 5 cut(s) | 269, 631, 823, 1159, 1418 |
| Hpy99I | CGWCG | 4 cut(s) | 221, 380, 1360, 1396 |
| HpyAV | CCTTC | 9 cut(s) | 106, 316, 323, 416, 995, 1097, 1177, 1216, 1355 |
| HpyCH4III | ACNGT | 2 cut(s) | 49, 411 |
| HpyCH4V | TGCA | 6 cut(s) | 52, 157, 407, 991, 1033, 1351 |
| HpyF3I | CTNAG | 7 cut(s) | 63, 261, 515, 608, 800, 1008, 1094 |
| Hsp92I | GRCGYC | 4 cut(s) | 368, 711, 903, 1227 |
| Hsp92II | CATG | 5 cut(s) | 335, 470, 563, 755, 1213 |
| HspAI | GCGC | 6 cut(s) | 93, 236, 250, 368, 1227, 1407 |
| KasI | GGCGCC | 2 cut(s) | 367, 1226 |
| KpnI | GGTACC | 2 cut(s) | 1323, 1446 |
| KroI | GCCGGC | 1 cut(s) | 1267 |
| KroNI | GCCGGC | 1 cut(s) | 1269 |
| KspI | CCGCGG | 2 cut(s) | 718, 910 |
| Kzo9I | GATC | 5 cut(s) | 79, 721, 978, 1480, 1493 |
| LguI | GCTCTTC | 3 cut(s) | 504, 597, 789 |
| LmnI | GCTCC | 6 cut(s) | 190, 340, 427, 943, 970, 994 |
| Lsp1109I | GCAGC | 8 cut(s) | 82, 505, 598, 790, 1045, 1102, 1190, 1344 |
| LweI | GCATC | 1 cut(s) | 111 |
| MaeI | CTAG | 1 cut(s) | 386 |
| MaeIII | GTNAC | 5 cut(s) | 178, 205, 1084, 1365, 1401 |
| MalI | GATC | 5 cut(s) | 81, 723, 980, 1482, 1495 |
| MbiI | CCGCTC | 4 cut(s) | 430, 676, 868, 997 |
| MboI | GATC | 5 cut(s) | 79, 721, 978, 1480, 1493 |
| MhlI | GDGCHC | 5 cut(s) | 310, 516, 609, 801, 1195 |
| MluCI | AATT | 2 cut(s) | 542, 734 |
| MluI | ACGCGT | 1 cut(s) | 955 |
| Mly113I | GGCGCC | 2 cut(s) | 368, 1227 |
| MmeI | TCCRAC | 3 cut(s) | 948, 1374, 1487 |
| MroNI | GCCGGC | 1 cut(s) | 1267 |
| MslI | CAYNNNNRTG | 2 cut(s) | 27, 135 |
| MspA1I | CMGCKG | 7 cut(s) | 717, 909, 1036, 1127, 1313, 1335, 1542 |
| MspI | CCGG | 8 cut(s) | 75, 161, 253, 499, 592, 784, 1268, 1286 |
| MspR9I | CCNGG | 6 cut(s) | 76, 499, 592, 784, 1286, 1432 |
| Mva1269I | GAATGC | 1 cut(s) | 1351 |
| MvaI | CCWGG | 1 cut(s) | 1432 |
| MvnI | CGCG | 4 cut(s) | 717, 909, 957, 1407 |
| NaeI | GCCGGC | 1 cut(s) | 1269 |
| NarI | GGCGCC | 2 cut(s) | 368, 1227 |
| NciI | CCSGG | 5 cut(s) | 76, 499, 592, 784, 1286 |
| NdeII | GATC | 5 cut(s) | 79, 721, 978, 1480, 1493 |
| NgoMIV | GCCGGC | 1 cut(s) | 1267 |
| NlaIII | CATG | 5 cut(s) | 335, 470, 563, 755, 1213 |
| NmeAIII | GCCGAG | 2 cut(s) | 416, 424 |
| NmuCI | GTSAC | 4 cut(s) | 178, 205, 1365, 1401 |
| NotI | GCGGCCGC | 1 cut(s) | 1119 |
| NspI | RCATGY | 2 cut(s) | 335, 1213 |
| OliI | CACNNNNGTG | 2 cut(s) | 27, 135 |
| PaeR7I | CTCGAG | 1 cut(s) | 1470 |
| PciI | ACATGT | 1 cut(s) | 1209 |
| PciSI | GCTCTTC | 3 cut(s) | 504, 597, 789 |
| PctI | GAATGC | 1 cut(s) | 1351 |
| PdiI | GCCGGC | 1 cut(s) | 1269 |
| Ple19I | CGATCG | 1 cut(s) | 1496 |
| PluTI | GGCGCC | 2 cut(s) | 371, 1230 |
| PscI | ACATGT | 1 cut(s) | 1209 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1295 |
| Psp124BI | GAGCTC | 3 cut(s) | 516, 609, 801 |
| Psp6I | CCWGG | 1 cut(s) | 1430 |
| PspEI | GGTNACC | 1 cut(s) | 1084 |
| PspFI | CCCAGC | 4 cut(s) | 221, 1072, 1187, 1309 |
| PspGI | CCWGG | 1 cut(s) | 1430 |
| PspOMI | GGGCCC | 2 cut(s) | 306, 1191 |
| PspXI | VCTCGAGB | 1 cut(s) | 1470 |
| PstI | CTGCAG | 1 cut(s) | 993 |
| PvuI | CGATCG | 1 cut(s) | 1496 |
| PvuII | CAGCTG | 1 cut(s) | 1313 |
| RsaI | GTAC | 3 cut(s) | 1111, 1321, 1444 |
| RsaNI | GTAC | 3 cut(s) | 1110, 1320, 1443 |
| RseI | CAYNNNNRTG | 2 cut(s) | 27, 135 |
| SacI | GAGCTC | 3 cut(s) | 516, 609, 801 |
| SacII | CCGCGG | 2 cut(s) | 718, 910 |
| SapI | GCTCTTC | 3 cut(s) | 504, 597, 789 |
| Sau3AI | GATC | 5 cut(s) | 79, 721, 978, 1480, 1493 |
| ScaI | AGTACT | 1 cut(s) | 1111 |
| ScrFI | CCNGG | 6 cut(s) | 76, 499, 592, 784, 1286, 1432 |
| SduI | GDGCHC | 5 cut(s) | 310, 516, 609, 801, 1195 |
| SfaNI | GCATC | 1 cut(s) | 111 |
| SfcI | CTRYAG | 1 cut(s) | 989 |
| SfoI | GGCGCC | 2 cut(s) | 369, 1228 |
| Sfr274I | CTCGAG | 1 cut(s) | 1470 |
| Sfr303I | CCGCGG | 2 cut(s) | 718, 910 |
| SgrBI | CCGCGG | 2 cut(s) | 718, 910 |
| SinI | GGWCC | 2 cut(s) | 140, 1476 |
| SlaI | CTCGAG | 1 cut(s) | 1470 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 27, 135 |
| SmlI | CTYRAG | 1 cut(s) | 1470 |
| SmoI | CTYRAG | 1 cut(s) | 1470 |
| Sse9I | AATT | 2 cut(s) | 542, 734 |
| SspDI | GGCGCC | 2 cut(s) | 367, 1226 |
| SspMI | CTAG | 1 cut(s) | 386 |
| SstI | GAGCTC | 3 cut(s) | 516, 609, 801 |
| StyD4I | CCNGG | 6 cut(s) | 74, 497, 590, 782, 1284, 1430 |
| StyI | CCWWGG | 3 cut(s) | 25, 687, 879 |
| TaaI | ACNGT | 2 cut(s) | 49, 411 |
| TaqI | TCGA | 9 cut(s) | 341, 488, 581, 672, 773, 864, 1355, 1471, 1530 |
| TaqII | GACCGA | 2 cut(s) | 1187, 1486 |
| TasI | AATT | 2 cut(s) | 542, 734 |
| TatI | WGTACW | 1 cut(s) | 1109 |
| TscAI | CASTG | 2 cut(s) | 204, 1173 |
| TseFI | GTSAC | 4 cut(s) | 178, 205, 1365, 1401 |
| TseI | GCWGC | 8 cut(s) | 95, 493, 586, 778, 1033, 1115, 1178, 1332 |
| Tsp45I | GTSAC | 4 cut(s) | 178, 205, 1365, 1401 |
| TspDTI | ATGAA | 1 cut(s) | 966 |
| TspGWI | ACGGA | 2 cut(s) | 527, 1373 |
| TspRI | CASTG | 2 cut(s) | 204, 1173 |
| VpaK11BI | GGWCC | 2 cut(s) | 140, 1476 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 29, 989 |
| XceI | RCATGY | 2 cut(s) | 335, 1213 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 23 |
| XhoI | CTCGAG | 1 cut(s) | 1470 |
| XspI | CTAG | 1 cut(s) | 386 |
| ZrmI | AGTACT | 1 cut(s) | 1111 |