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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 468 |
| Acc65I | GGTACC | 1 cut(s) | 425 |
| AccB1I | GGYRCC | 3 cut(s) | 227, 379, 425 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 237 |
| AccBSI | CCGCTC | 1 cut(s) | 111 |
| AclI | AACGTT | 1 cut(s) | 411 |
| AcoI | YGGCCR | 2 cut(s) | 6, 513 |
| AcuI | CTGAAG | 1 cut(s) | 17 |
| AcyI | GRCGYC | 1 cut(s) | 248 |
| AfaI | GTAC | 1 cut(s) | 427 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 97, 237, 293, 333, 358, 369, 542 |
| AgsI | TTSAA | 2 cut(s) | 142, 563 |
| AjnI | CCWGG | 2 cut(s) | 286, 313 |
| AluBI | AGCT | 3 cut(s) | 94, 167, 211 |
| AluI | AGCT | 3 cut(s) | 94, 167, 211 |
| Alw26I | GTCTC | 2 cut(s) | 403, 434 |
| AoxI | GGCC | 6 cut(s) | 6, 120, 186, 360, 405, 513 |
| ApeKI | GCWGC | 3 cut(s) | 86, 179, 526 |
| Asp718I | GGTACC | 1 cut(s) | 425 |
| AspLEI | GCGC | 2 cut(s) | 324, 469 |
| AspS9I | GGNCC | 2 cut(s) | 297, 405 |
| AsuC2I | CCSGG | 1 cut(s) | 430 |
| AsuHPI | GGTGA | 2 cut(s) | 76, 557 |
| AsuNHI | GCTAGC | 1 cut(s) | 260 |
| AvaII | GGWCC | 1 cut(s) | 297 |
| BaeGI | GKGCMC | 1 cut(s) | 230 |
| BanI | GGYRCC | 3 cut(s) | 227, 379, 425 |
| BanII | GRGCYC | 1 cut(s) | 461 |
| BbsI | GAAGAC | 1 cut(s) | 74 |
| BbvCI | CCTCAGC | 1 cut(s) | 301 |
| BbvI | GCAGC | 3 cut(s) | 73, 191, 538 |
| BccI | CCATC | 1 cut(s) | 452 |
| BciT130I | CCWGG | 2 cut(s) | 288, 315 |
| BclI | TGATCA | 1 cut(s) | 343 |
| BcnI | CCSGG | 1 cut(s) | 430 |
| BcoDI | GTCTC | 2 cut(s) | 403, 434 |
| BfaI | CTAG | 2 cut(s) | 261, 402 |
| BisI | GCNGC | 9 cut(s) | 6, 48, 87, 123, 126, 153, 180, 420, 527 |
| BlsI | GCNGC | 9 cut(s) | 7, 49, 88, 124, 127, 154, 181, 421, 528 |
| Bme1390I | CCNGG | 3 cut(s) | 288, 315, 430 |
| Bme18I | GGWCC | 1 cut(s) | 297 |
| BmgT120I | GGNCC | 2 cut(s) | 297, 405 |
| BmiI | GGNNCC | 4 cut(s) | 229, 298, 381, 427 |
| BmrFI | CCNGG | 3 cut(s) | 288, 315, 430 |
| BmrI | ACTGGG | 1 cut(s) | 247 |
| BmsI | GCATC | 1 cut(s) | 124 |
| BmtI | GCTAGC | 1 cut(s) | 264 |
| BmuI | ACTGGG | 1 cut(s) | 247 |
| BpiI | GAAGAC | 1 cut(s) | 74 |
| BpmI | CTGGAG | 1 cut(s) | 116 |
| Bpu10I | CCTNAGC | 1 cut(s) | 301 |
| BpuMI | CCSGG | 1 cut(s) | 430 |
| BsaHI | GRCGYC | 1 cut(s) | 248 |
| BsaI | GGTCTC | 2 cut(s) | 403, 434 |
| BsaJI | CCNNGG | 5 cut(s) | 9, 60, 286, 287, 516 |
| BsaWI | WCCGGW | 2 cut(s) | 376, 535 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 233, 263, 494, 524 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 97, 237, 293, 333, 358, 369, 542 |
| Bse118I | RCCGGY | 1 cut(s) | 188 |
| Bse1I | ACTGG | 1 cut(s) | 242 |
| Bse3DI | GCAATG | 1 cut(s) | 337 |
| BseBI | CCWGG | 2 cut(s) | 288, 315 |
| BseDI | CCNNGG | 5 cut(s) | 9, 60, 286, 287, 516 |
| BseGI | GGATG | 2 cut(s) | 139, 442 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 97, 237, 293, 333, 358, 369, 542 |
| BseMI | GCAATG | 1 cut(s) | 337 |
| BseMII | CTCAG | 4 cut(s) | 165, 315, 384, 446 |
| BseNI | ACTGG | 1 cut(s) | 242 |
| BseRI | GAGGAG | 1 cut(s) | 121 |
| BseSI | GKGCMC | 1 cut(s) | 230 |
| BseX3I | CGGCCG | 1 cut(s) | 513 |
| BseXI | GCAGC | 3 cut(s) | 73, 191, 538 |
| BseYI | CCCAGC | 3 cut(s) | 90, 352, 366 |
| Bsh1285I | CGRYCG | 1 cut(s) | 516 |
| BshFI | GGCC | 6 cut(s) | 8, 122, 188, 362, 407, 515 |
| BshNI | GGYRCC | 3 cut(s) | 227, 379, 425 |
| BsiEI | CGRYCG | 1 cut(s) | 516 |
| BsiSI | CCGG | 5 cut(s) | 189, 327, 377, 430, 536 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 97, 237, 293, 333, 358, 369, 542 |
| BsmAI | GTCTC | 2 cut(s) | 403, 434 |
| BsnI | GGCC | 6 cut(s) | 8, 122, 188, 362, 407, 515 |
| Bso31I | GGTCTC | 2 cut(s) | 403, 434 |
| Bsp1286I | GDGCHC | 2 cut(s) | 230, 461 |
| Bsp143I | GATC | 1 cut(s) | 343 |
| BspANI | GGCC | 6 cut(s) | 8, 122, 188, 362, 407, 515 |
| BspCNI | CTCAG | 4 cut(s) | 166, 314, 385, 447 |
| BspHI | TCATGA | 2 cut(s) | 346, 447 |
| BspLI | GGNNCC | 4 cut(s) | 229, 298, 381, 427 |
| BspOI | GCTAGC | 1 cut(s) | 264 |
| BspT107I | GGYRCC | 3 cut(s) | 227, 379, 425 |
| BspTNI | GGTCTC | 2 cut(s) | 403, 434 |
| BsrBI | CCGCTC | 1 cut(s) | 111 |
| BsrDI | GCAATG | 1 cut(s) | 337 |
| BsrFI | RCCGGY | 1 cut(s) | 188 |
| BsrI | ACTGG | 1 cut(s) | 242 |
| BssAI | RCCGGY | 1 cut(s) | 188 |
| BssECI | CCNNGG | 5 cut(s) | 9, 60, 286, 287, 516 |
| BssMI | GATC | 1 cut(s) | 343 |
| BssNI | GRCGYC | 1 cut(s) | 248 |
| BssT1I | CCWWGG | 1 cut(s) | 9 |
| Bst2UI | CCWGG | 2 cut(s) | 288, 315 |
| Bst4CI | ACNGT | 2 cut(s) | 279, 510 |
| BstACI | GRCGYC | 1 cut(s) | 248 |
| BstC8I | GCNNGC | 3 cut(s) | 165, 262, 320 |
| BstDEI | CTNAG | 4 cut(s) | 174, 301, 393, 455 |
| BstF5I | GGATG | 2 cut(s) | 139, 442 |
| BstHHI | GCGC | 2 cut(s) | 324, 469 |
| BstKTI | GATC | 1 cut(s) | 346 |
| BstMAI | GTCTC | 2 cut(s) | 403, 434 |
| BstMBI | GATC | 1 cut(s) | 343 |
| BstMCI | CGRYCG | 1 cut(s) | 516 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 56, 134, 185, 319 |
| BstNI | CCWGG | 2 cut(s) | 288, 315 |
| BstSCI | CCNGG | 3 cut(s) | 286, 313, 428 |
| BstSLI | GKGCMC | 1 cut(s) | 230 |
| BstV1I | GCAGC | 3 cut(s) | 73, 191, 538 |
| BstV2I | GAAGAC | 1 cut(s) | 74 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 415 |
| BstZI | CGGCCG | 1 cut(s) | 513 |
| BsuRI | GGCC | 6 cut(s) | 8, 122, 188, 362, 407, 515 |
| BtsCI | GGATG | 2 cut(s) | 139, 442 |
| Cac8I | GCNNGC | 3 cut(s) | 165, 262, 320 |
| CciI | TCATGA | 2 cut(s) | 346, 447 |
| CfoI | GCGC | 2 cut(s) | 324, 469 |
| Cfr10I | RCCGGY | 1 cut(s) | 188 |
| Cfr13I | GGNCC | 2 cut(s) | 297, 405 |
| CseI | GACGC | 1 cut(s) | 237 |
| Csp6I | GTAC | 1 cut(s) | 426 |
| CviAII | CATG | 3 cut(s) | 347, 448, 470 |
| CviQI | GTAC | 1 cut(s) | 426 |
| DdeI | CTNAG | 4 cut(s) | 174, 301, 393, 455 |
| DpnI | GATC | 1 cut(s) | 345 |
| DpnII | GATC | 1 cut(s) | 343 |
| EaeI | YGGCCR | 2 cut(s) | 6, 513 |
| EagI | CGGCCG | 1 cut(s) | 513 |
| EciI | GGCGGA | 2 cut(s) | 46, 116 |
| EclXI | CGGCCG | 1 cut(s) | 513 |
| Eco130I | CCWWGG | 1 cut(s) | 9 |
| Eco147I | AGGCCT | 1 cut(s) | 362 |
| Eco24I | GRGCYC | 1 cut(s) | 461 |
| Eco31I | GGTCTC | 2 cut(s) | 403, 434 |
| Eco47I | GGWCC | 1 cut(s) | 297 |
| Eco52I | CGGCCG | 1 cut(s) | 513 |
| Eco57I | CTGAAG | 1 cut(s) | 17 |
| EcoO109I | RGGNCCY | 1 cut(s) | 297 |
| EcoRII | CCWGG | 2 cut(s) | 286, 313 |
| EcoT14I | CCWWGG | 1 cut(s) | 9 |
| EcoT38I | GRGCYC | 1 cut(s) | 461 |
| ErhI | CCWWGG | 1 cut(s) | 9 |
| FaeI | CATG | 3 cut(s) | 350, 451, 473 |
| FaiI | YATR | 6 cut(s) | 159, 266, 348, 449, 471, 494 |
| FatI | CATG | 3 cut(s) | 346, 447, 469 |
| FauI | CCCGC | 1 cut(s) | 287 |
| FbaI | TGATCA | 1 cut(s) | 343 |
| Fnu4HI | GCNGC | 9 cut(s) | 6, 48, 87, 123, 126, 153, 180, 420, 527 |
| FokI | GGATG | 2 cut(s) | 146, 449 |
| FriOI | GRGCYC | 1 cut(s) | 461 |
| Fsp4HI | GCNGC | 9 cut(s) | 6, 48, 87, 123, 126, 153, 180, 420, 527 |
| FspBI | CTAG | 2 cut(s) | 261, 402 |
| FspI | TGCGCA | 1 cut(s) | 468 |
| GlaI | GCGC | 2 cut(s) | 323, 468 |
| GluI | GCNGC | 9 cut(s) | 6, 48, 87, 123, 126, 153, 180, 420, 527 |
| GsaI | CCCAGC | 3 cut(s) | 94, 356, 370 |
| GsuI | CTGGAG | 1 cut(s) | 116 |
| HaeIII | GGCC | 6 cut(s) | 8, 122, 188, 362, 407, 515 |
| HapII | CCGG | 5 cut(s) | 189, 327, 377, 430, 536 |
| HgaI | GACGC | 1 cut(s) | 237 |
| HhaI | GCGC | 2 cut(s) | 324, 469 |
| Hin1I | GRCGYC | 1 cut(s) | 248 |
| Hin1II | CATG | 3 cut(s) | 350, 451, 473 |
| Hin6I | GCGC | 2 cut(s) | 322, 467 |
| HinP1I | GCGC | 2 cut(s) | 322, 467 |
| HindIII | AAGCTT | 1 cut(s) | 165 |
| HinfI | GANTC | 4 cut(s) | 41, 254, 373, 451 |
| HpaII | CCGG | 5 cut(s) | 189, 327, 377, 430, 536 |
| HphI | GGTGA | 2 cut(s) | 76, 557 |
| Hpy188I | TCNGA | 6 cut(s) | 36, 216, 253, 394, 456, 478 |
| Hpy188III | TCNNGA | 2 cut(s) | 347, 448 |
| Hpy99I | CGWCG | 1 cut(s) | 514 |
| HpyAV | CCTTC | 3 cut(s) | 148, 178, 238 |
| HpyCH4III | ACNGT | 2 cut(s) | 279, 510 |
| HpyCH4IV | ACGT | 2 cut(s) | 204, 411 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 56, 134, 185, 319 |
| HpyF3I | CTNAG | 4 cut(s) | 174, 301, 393, 455 |
| HpySE526I | ACGT | 2 cut(s) | 204, 411 |
| Hsp92I | GRCGYC | 1 cut(s) | 248 |
| Hsp92II | CATG | 3 cut(s) | 350, 451, 473 |
| HspAI | GCGC | 2 cut(s) | 322, 467 |
| KpnI | GGTACC | 1 cut(s) | 429 |
| Ksp22I | TGATCA | 1 cut(s) | 343 |
| Kzo9I | GATC | 1 cut(s) | 343 |
| LmnI | GCTCC | 4 cut(s) | 108, 329, 502, 523 |
| Lsp1109I | GCAGC | 3 cut(s) | 73, 191, 538 |
| LweI | GCATC | 1 cut(s) | 124 |
| MaeI | CTAG | 2 cut(s) | 261, 402 |
| MaeII | ACGT | 2 cut(s) | 204, 411 |
| MalI | GATC | 1 cut(s) | 345 |
| MbiI | CCGCTC | 1 cut(s) | 111 |
| MboI | GATC | 1 cut(s) | 343 |
| MboII | GAAGA | 2 cut(s) | 23, 79 |
| MhlI | GDGCHC | 2 cut(s) | 230, 461 |
| MluCI | AATT | 1 cut(s) | 565 |
| MlyI | GAGTC | 3 cut(s) | 35, 367, 445 |
| MmeI | TCCRAC | 1 cut(s) | 298 |
| MseI | TTAA | 1 cut(s) | 15 |
| MspA1I | CMGCKG | 4 cut(s) | 94, 128, 356, 370 |
| MspI | CCGG | 5 cut(s) | 189, 327, 377, 430, 536 |
| MspR9I | CCNGG | 3 cut(s) | 288, 315, 430 |
| MvaI | CCWGG | 2 cut(s) | 288, 315 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 56, 134, 185, 319 |
| NciI | CCSGG | 1 cut(s) | 430 |
| NdeII | GATC | 1 cut(s) | 343 |
| NheI | GCTAGC | 1 cut(s) | 260 |
| NlaIII | CATG | 3 cut(s) | 350, 451, 473 |
| NlaIV | GGNNCC | 4 cut(s) | 229, 298, 381, 427 |
| NmeAIII | GCCGAG | 2 cut(s) | 85, 541 |
| NsbI | TGCGCA | 1 cut(s) | 468 |
| PagI | TCATGA | 2 cut(s) | 346, 447 |
| PasI | CCCWGGG | 1 cut(s) | 287 |
| PceI | AGGCCT | 1 cut(s) | 362 |
| PfeI | GAWTC | 1 cut(s) | 254 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 237 |
| PkrI | GCNGC | 9 cut(s) | 7, 49, 88, 124, 127, 154, 181, 421, 528 |
| PleI | GAGTC | 3 cut(s) | 35, 367, 445 |
| PpsI | GAGTC | 3 cut(s) | 35, 367, 445 |
| PpuMI | RGGWCCY | 1 cut(s) | 297 |
| Psp1406I | AACGTT | 1 cut(s) | 411 |
| Psp5II | RGGWCCY | 1 cut(s) | 297 |
| Psp6I | CCWGG | 2 cut(s) | 286, 313 |
| PspFI | CCCAGC | 3 cut(s) | 90, 352, 366 |
| PspGI | CCWGG | 2 cut(s) | 286, 313 |
| PspN4I | GGNNCC | 4 cut(s) | 229, 298, 381, 427 |
| PspPI | GGNCC | 2 cut(s) | 297, 405 |
| PspPPI | RGGWCCY | 1 cut(s) | 297 |
| PvuII | CAGCTG | 1 cut(s) | 94 |
| RsaI | GTAC | 1 cut(s) | 427 |
| RsaNI | GTAC | 1 cut(s) | 426 |
| SaqAI | TTAA | 1 cut(s) | 15 |
| SatI | GCNGC | 9 cut(s) | 6, 48, 87, 123, 126, 153, 180, 420, 527 |
| Sau3AI | GATC | 1 cut(s) | 343 |
| Sau96I | GGNCC | 2 cut(s) | 297, 405 |
| SchI | GAGTC | 3 cut(s) | 35, 367, 445 |
| ScrFI | CCNGG | 3 cut(s) | 288, 315, 430 |
| SduI | GDGCHC | 2 cut(s) | 230, 461 |
| SfaNI | GCATC | 1 cut(s) | 124 |
| SinI | GGWCC | 1 cut(s) | 297 |
| Sse9I | AATT | 1 cut(s) | 565 |
| SseBI | AGGCCT | 1 cut(s) | 362 |
| SspMI | CTAG | 2 cut(s) | 261, 402 |
| StuI | AGGCCT | 1 cut(s) | 362 |
| StyD4I | CCNGG | 3 cut(s) | 286, 313, 428 |
| StyI | CCWWGG | 1 cut(s) | 9 |
| TaaI | ACNGT | 2 cut(s) | 279, 510 |
| TaiI | ACGT | 2 cut(s) | 207, 414 |
| TasI | AATT | 1 cut(s) | 565 |
| TauI | GCSGC | 6 cut(s) | 8, 50, 125, 128, 155, 422 |
| TfiI | GAWTC | 1 cut(s) | 254 |
| Tru1I | TTAA | 1 cut(s) | 15 |
| Tru9I | TTAA | 1 cut(s) | 15 |
| TseI | GCWGC | 3 cut(s) | 86, 179, 526 |
| TspGWI | ACGGA | 1 cut(s) | 378 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 237 |
| VpaK11BI | GGWCC | 1 cut(s) | 297 |
| XspI | CTAG | 2 cut(s) | 261, 402 |