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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 344 |
| Acc36I | ACCTGC | 1 cut(s) | 403 |
| AccB1I | GGYRCC | 3 cut(s) | 501, 1078, 1512 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1300 |
| AccBSI | CCGCTC | 5 cut(s) | 270, 1270, 1510, 1588, 1742 |
| AccII | CGCG | 1 cut(s) | 717 |
| AclWI | GGATC | 6 cut(s) | 382, 706, 719, 975, 1644, 1663 |
| AcoI | YGGCCR | 3 cut(s) | 1647, 1729, 1839 |
| AcsI | RAATTY | 2 cut(s) | 644, 1250 |
| AcuI | CTGAAG | 3 cut(s) | 613, 1652, 1658 |
| AcyI | GRCGYC | 2 cut(s) | 1079, 1513 |
| AfaI | GTAC | 1 cut(s) | 812 |
| AgeI | ACCGGT | 1 cut(s) | 761 |
| AgsI | TTSAA | 7 cut(s) | 24, 883, 1162, 1183, 1346, 1457, 1783 |
| AjnI | CCWGG | 3 cut(s) | 597, 1093, 1425 |
| AleI | CACNNNNGTG | 1 cut(s) | 507 |
| Alw26I | GTCTC | 5 cut(s) | 968, 1012, 1466, 1475, 1606 |
| AlwI | GGATC | 6 cut(s) | 382, 706, 719, 975, 1644, 1663 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1426 |
| Ama87I | CYCGRG | 2 cut(s) | 159, 191 |
| AoxI | GGCC | 6 cut(s) | 600, 1623, 1647, 1729, 1827, 1839 |
| ApoI | RAATTY | 2 cut(s) | 644, 1250 |
| AsiGI | ACCGGT | 1 cut(s) | 761 |
| AspLEI | GCGC | 4 cut(s) | 1018, 1081, 1332, 1515 |
| AspS9I | GGNCC | 4 cut(s) | 362, 521, 895, 1624 |
| AsuC2I | CCSGG | 3 cut(s) | 160, 161, 604 |
| AsuHPI | GGTGA | 6 cut(s) | 179, 217, 1344, 1511, 1717, 1844 |
| AvaI | CYCGRG | 2 cut(s) | 159, 191 |
| AvaII | GGWCC | 3 cut(s) | 362, 521, 895 |
| BaeGI | GKGCMC | 2 cut(s) | 405, 1377 |
| BalI | TGGCCA | 2 cut(s) | 1731, 1841 |
| BamHI | GGATCC | 1 cut(s) | 711 |
| BanI | GGYRCC | 3 cut(s) | 501, 1078, 1512 |
| BanII | GRGCYC | 1 cut(s) | 802 |
| BauI | CACGAG | 1 cut(s) | 795 |
| BbvCI | CCTCAGC | 1 cut(s) | 1701 |
| BccI | CCATC | 3 cut(s) | 582, 1117, 1740 |
| BceAI | ACGGC | 1 cut(s) | 1451 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1217, 1251 |
| BciT130I | CCWGG | 3 cut(s) | 599, 1095, 1427 |
| BcnI | CCSGG | 3 cut(s) | 160, 161, 604 |
| BcoDI | GTCTC | 5 cut(s) | 968, 1012, 1466, 1475, 1606 |
| BfaI | CTAG | 5 cut(s) | 45, 131, 201, 939, 1610 |
| BfmI | CTRYAG | 3 cut(s) | 105, 146, 1357 |
| BfoI | RGCGCY | 2 cut(s) | 1082, 1516 |
| BfuAI | ACCTGC | 1 cut(s) | 403 |
| BlpI | GCTNAGC | 1 cut(s) | 1200 |
| Bme1390I | CCNGG | 6 cut(s) | 160, 161, 599, 604, 1095, 1427 |
| Bme18I | GGWCC | 3 cut(s) | 362, 521, 895 |
| BmeT110I | CYCGRG | 2 cut(s) | 159, 191 |
| BmgT120I | GGNCC | 4 cut(s) | 362, 521, 895, 1624 |
| BmiI | GGNNCC | 8 cut(s) | 274, 503, 522, 523, 713, 1080, 1092, 1514 |
| BmrFI | CCNGG | 6 cut(s) | 160, 161, 599, 604, 1095, 1427 |
| BmsI | GCATC | 3 cut(s) | 1492, 1525, 1534 |
| BpmI | CTGGAG | 7 cut(s) | 378, 941, 992, 1226, 1337, 1448, 1736 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1442, 1701 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1200 |
| BpuEI | CTTGAG | 2 cut(s) | 893, 1286 |
| BpuMI | CCSGG | 3 cut(s) | 160, 161, 604 |
| Bsa29I | ATCGAT | 1 cut(s) | 1875 |
| BsaHI | GRCGYC | 2 cut(s) | 1079, 1513 |
| BsaI | GGTCTC | 1 cut(s) | 1466 |
| BsaWI | WCCGGW | 2 cut(s) | 275, 761 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 914, 944, 1025, 1055, 1736, 1766 |
| Bse118I | RCCGGY | 2 cut(s) | 761, 1829 |
| Bse1I | ACTGG | 4 cut(s) | 187, 301, 1019, 1581 |
| Bse3DI | GCAATG | 1 cut(s) | 1009 |
| BseBI | CCWGG | 3 cut(s) | 599, 1095, 1427 |
| BseCI | ATCGAT | 1 cut(s) | 1875 |
| BseGI | GGATG | 6 cut(s) | 220, 291, 379, 593, 1044, 1726 |
| BseMI | GCAATG | 1 cut(s) | 1009 |
| BseMII | CTCAG | 7 cut(s) | 343, 497, 894, 1191, 1456, 1692, 1806 |
| BseNI | ACTGG | 4 cut(s) | 187, 301, 1019, 1581 |
| BseRI | GAGGAG | 3 cut(s) | 254, 707, 1463 |
| BseSI | GKGCMC | 2 cut(s) | 405, 1377 |
| BseYI | CCCAGC | 1 cut(s) | 559 |
| BsgI | GTGCAG | 3 cut(s) | 527, 1043, 1776 |
| Bsh1236I | CGCG | 1 cut(s) | 717 |
| BshFI | GGCC | 6 cut(s) | 602, 1625, 1649, 1731, 1829, 1841 |
| BshNI | GGYRCC | 3 cut(s) | 501, 1078, 1512 |
| BshTI | ACCGGT | 1 cut(s) | 761 |
| BshVI | ATCGAT | 1 cut(s) | 1875 |
| BsiHKCI | CYCGRG | 2 cut(s) | 159, 191 |
| BsiSI | CCGG | 5 cut(s) | 160, 276, 603, 762, 1830 |
| BslFI | GGGAC | 3 cut(s) | 507, 577, 1111 |
| BsmAI | GTCTC | 5 cut(s) | 968, 1012, 1466, 1475, 1606 |
| BsmFI | GGGAC | 3 cut(s) | 507, 577, 1111 |
| BsmI | GAATGC | 1 cut(s) | 878 |
| BsnI | GGCC | 6 cut(s) | 602, 1625, 1649, 1731, 1829, 1841 |
| Bso31I | GGTCTC | 1 cut(s) | 1466 |
| BsoBI | CYCGRG | 2 cut(s) | 159, 191 |
| Bsp1286I | GDGCHC | 3 cut(s) | 405, 802, 1377 |
| Bsp143I | GATC | 6 cut(s) | 387, 423, 711, 967, 1636, 1668 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1200 |
| Bsp19I | CCATGG | 1 cut(s) | 891 |
| BspANI | GGCC | 6 cut(s) | 602, 1625, 1649, 1731, 1829, 1841 |
| BspCNI | CTCAG | 7 cut(s) | 342, 498, 895, 1192, 1455, 1693, 1807 |
| BspDI | ATCGAT | 1 cut(s) | 1875 |
| BspFNI | CGCG | 1 cut(s) | 717 |
| BspLI | GGNNCC | 8 cut(s) | 274, 503, 522, 523, 713, 1080, 1092, 1514 |
| BspMAI | CTGCAG | 1 cut(s) | 109 |
| BspMI | ACCTGC | 1 cut(s) | 403 |
| BspPI | GGATC | 6 cut(s) | 382, 706, 719, 975, 1644, 1663 |
| BspT107I | GGYRCC | 3 cut(s) | 501, 1078, 1512 |
| BspTNI | GGTCTC | 1 cut(s) | 1466 |
| BsrBI | CCGCTC | 5 cut(s) | 270, 1270, 1510, 1588, 1742 |
| BsrDI | GCAATG | 1 cut(s) | 1009 |
| BsrFI | RCCGGY | 2 cut(s) | 761, 1829 |
| BsrI | ACTGG | 4 cut(s) | 187, 301, 1019, 1581 |
| BssAI | RCCGGY | 2 cut(s) | 761, 1829 |
| BssMI | GATC | 6 cut(s) | 387, 423, 711, 967, 1636, 1668 |
| BssNI | GRCGYC | 2 cut(s) | 1079, 1513 |
| BssSI | CACGAG | 1 cut(s) | 795 |
| BssT1I | CCWWGG | 5 cut(s) | 802, 891, 1086, 1521, 1650 |
| Bst2BI | CACGAG | 1 cut(s) | 795 |
| Bst2UI | CCWGG | 3 cut(s) | 599, 1095, 1427 |
| Bst6I | CTCTTC | 2 cut(s) | 684, 1703 |
| BstACI | GRCGYC | 2 cut(s) | 1079, 1513 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1763 |
| BstDEI | CTNAG | 9 cut(s) | 329, 506, 903, 1200, 1442, 1485, 1605, 1701, 1815 |
| BstDSI | CCRYGG | 2 cut(s) | 715, 891 |
| BstEII | GGTNACC | 1 cut(s) | 185 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 1520, 1631 |
| BstF5I | GGATG | 6 cut(s) | 220, 291, 379, 593, 1044, 1726 |
| BstFNI | CGCG | 1 cut(s) | 717 |
| BstH2I | RGCGCY | 2 cut(s) | 1082, 1516 |
| BstHHI | GCGC | 4 cut(s) | 1018, 1081, 1332, 1515 |
| BstKTI | GATC | 6 cut(s) | 390, 426, 714, 970, 1639, 1671 |
| BstMAI | GTCTC | 5 cut(s) | 968, 1012, 1466, 1475, 1606 |
| BstMBI | GATC | 6 cut(s) | 387, 423, 711, 967, 1636, 1668 |
| BstNI | CCWGG | 3 cut(s) | 599, 1095, 1427 |
| BstNSI | RCATGY | 1 cut(s) | 931 |
| BstPI | GGTNACC | 1 cut(s) | 185 |
| BstSCI | CCNGG | 6 cut(s) | 158, 159, 597, 602, 1093, 1425 |
| BstSFI | CTRYAG | 3 cut(s) | 105, 146, 1357 |
| BstSLI | GKGCMC | 2 cut(s) | 405, 1377 |
| BstUI | CGCG | 1 cut(s) | 717 |
| BstX2I | RGATCY | 3 cut(s) | 711, 967, 1668 |
| BstYI | RGATCY | 3 cut(s) | 711, 967, 1668 |
| Bsu15I | ATCGAT | 1 cut(s) | 1875 |
| BsuRI | GGCC | 6 cut(s) | 602, 1625, 1649, 1731, 1829, 1841 |
| BsuTUI | ATCGAT | 1 cut(s) | 1875 |
| BtgI | CCRYGG | 2 cut(s) | 715, 891 |
| BtsCI | GGATG | 6 cut(s) | 220, 291, 379, 593, 1044, 1726 |
| BtsI | GCAGTG | 1 cut(s) | 34 |
| BveI | ACCTGC | 1 cut(s) | 403 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1426 |
| CfoI | GCGC | 4 cut(s) | 1018, 1081, 1332, 1515 |
| Cfr10I | RCCGGY | 2 cut(s) | 761, 1829 |
| Cfr13I | GGNCC | 4 cut(s) | 362, 521, 895, 1624 |
| Cfr42I | CCGCGG | 1 cut(s) | 718 |
| Cfr9I | CCCGGG | 1 cut(s) | 159 |
| ClaI | ATCGAT | 1 cut(s) | 1875 |
| CseI | GACGC | 2 cut(s) | 372, 691 |
| Csp6I | GTAC | 1 cut(s) | 811 |
| CspAI | ACCGGT | 1 cut(s) | 761 |
| CviAII | CATG | 9 cut(s) | 172, 412, 416, 892, 928, 1394, 1598, 1810, 1837 |
| CviQI | GTAC | 1 cut(s) | 811 |
| DdeI | CTNAG | 9 cut(s) | 329, 506, 903, 1200, 1442, 1485, 1605, 1701, 1815 |
| DinI | GGCGCC | 2 cut(s) | 1080, 1514 |
| DpnI | GATC | 6 cut(s) | 389, 425, 713, 969, 1638, 1670 |
| DpnII | GATC | 6 cut(s) | 387, 423, 711, 967, 1636, 1668 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 344 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 344 |
| EaeI | YGGCCR | 3 cut(s) | 1647, 1729, 1839 |
| Eam1104I | CTCTTC | 2 cut(s) | 684, 1703 |
| EarI | CTCTTC | 2 cut(s) | 684, 1703 |
| EciI | GGCGGA | 4 cut(s) | 548, 740, 840, 1493 |
| Eco130I | CCWWGG | 5 cut(s) | 802, 891, 1086, 1521, 1650 |
| Eco24I | GRGCYC | 1 cut(s) | 802 |
| Eco31I | GGTCTC | 1 cut(s) | 1466 |
| Eco47I | GGWCC | 3 cut(s) | 362, 521, 895 |
| Eco57I | CTGAAG | 3 cut(s) | 613, 1652, 1658 |
| Eco88I | CYCGRG | 2 cut(s) | 159, 191 |
| Eco91I | GGTNACC | 1 cut(s) | 185 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 1520, 1631 |
| EcoO109I | RGGNCCY | 1 cut(s) | 521 |
| EcoO65I | GGTNACC | 1 cut(s) | 185 |
| EcoRI | GAATTC | 2 cut(s) | 644, 1250 |
| EcoRII | CCWGG | 3 cut(s) | 597, 1093, 1425 |
| EcoT14I | CCWWGG | 5 cut(s) | 802, 891, 1086, 1521, 1650 |
| EcoT22I | ATGCAT | 1 cut(s) | 417 |
| EcoT38I | GRGCYC | 1 cut(s) | 802 |
| EgeI | GGCGCC | 2 cut(s) | 1080, 1514 |
| EheI | GGCGCC | 2 cut(s) | 1080, 1514 |
| ErhI | CCWWGG | 5 cut(s) | 802, 891, 1086, 1521, 1650 |
| FaeI | CATG | 9 cut(s) | 175, 415, 419, 895, 931, 1397, 1601, 1813, 1840 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 855, 887 |
| FaqI | GGGAC | 3 cut(s) | 507, 577, 1111 |
| FatI | CATG | 9 cut(s) | 171, 411, 415, 891, 927, 1393, 1597, 1809, 1836 |
| FauI | CCCGC | 4 cut(s) | 391, 456, 979, 1263 |
| FauNDI | CATATG | 1 cut(s) | 1243 |
| FokI | GGATG | 6 cut(s) | 227, 298, 386, 600, 1051, 1733 |
| FriOI | GRGCYC | 1 cut(s) | 802 |
| FspBI | CTAG | 5 cut(s) | 45, 131, 201, 939, 1610 |
| GlaI | GCGC | 4 cut(s) | 1017, 1080, 1331, 1514 |
| GsaI | CCCAGC | 1 cut(s) | 563 |
| GsuI | CTGGAG | 7 cut(s) | 378, 941, 992, 1226, 1337, 1448, 1736 |
| HaeII | RGCGCY | 2 cut(s) | 1082, 1516 |
| HaeIII | GGCC | 6 cut(s) | 602, 1625, 1649, 1731, 1829, 1841 |
| HapII | CCGG | 5 cut(s) | 160, 276, 603, 762, 1830 |
| HgaI | GACGC | 2 cut(s) | 372, 691 |
| HhaI | GCGC | 4 cut(s) | 1018, 1081, 1332, 1515 |
| Hin1I | GRCGYC | 2 cut(s) | 1079, 1513 |
| Hin1II | CATG | 9 cut(s) | 175, 415, 419, 895, 931, 1397, 1601, 1813, 1840 |
| Hin6I | GCGC | 4 cut(s) | 1016, 1079, 1330, 1513 |
| HinP1I | GCGC | 4 cut(s) | 1016, 1079, 1330, 1513 |
| HincII | GTYRAC | 1 cut(s) | 792 |
| HindII | GTYRAC | 1 cut(s) | 792 |
| HinfI | GANTC | 9 cut(s) | 35, 83, 111, 314, 845, 1229, 1323, 1682, 1858 |
| HpaII | CCGG | 5 cut(s) | 160, 276, 603, 762, 1830 |
| HphI | GGTGA | 6 cut(s) | 179, 217, 1344, 1511, 1717, 1844 |
| Hpy166II | GTNNAC | 1 cut(s) | 792 |
| Hpy188I | TCNGA | 7 cut(s) | 124, 431, 587, 643, 659, 681, 1863 |
| Hpy188III | TCNNGA | 8 cut(s) | 227, 631, 872, 883, 920, 971, 1316, 1465 |
| Hpy8I | GTNNAC | 1 cut(s) | 792 |
| Hpy99I | CGWCG | 2 cut(s) | 14, 388 |
| HpyCH4IV | ACGT | 4 cut(s) | 9, 60, 1054, 1581 |
| HpyCH4V | TGCA | 8 cut(s) | 107, 415, 544, 927, 1024, 1213, 1574, 1757 |
| HpyF3I | CTNAG | 9 cut(s) | 329, 506, 903, 1200, 1442, 1485, 1605, 1701, 1815 |
| HpySE526I | ACGT | 4 cut(s) | 9, 60, 1054, 1581 |
| Hsp92I | GRCGYC | 2 cut(s) | 1079, 1513 |
| Hsp92II | CATG | 9 cut(s) | 175, 415, 419, 895, 931, 1397, 1601, 1813, 1840 |
| HspAI | GCGC | 4 cut(s) | 1016, 1079, 1330, 1513 |
| KasI | GGCGCC | 2 cut(s) | 1078, 1512 |
| KflI | GGGWCCC | 1 cut(s) | 521 |
| KspI | CCGCGG | 1 cut(s) | 718 |
| Kzo9I | GATC | 6 cut(s) | 387, 423, 711, 967, 1636, 1668 |
| LmnI | GCTCC | 9 cut(s) | 769, 989, 1090, 1127, 1261, 1471, 1507, 1739, 1868 |
| LweI | GCATC | 3 cut(s) | 1492, 1525, 1534 |
| MaeI | CTAG | 5 cut(s) | 45, 131, 201, 939, 1610 |
| MaeII | ACGT | 4 cut(s) | 9, 60, 1054, 1581 |
| MaeIII | GTNAC | 7 cut(s) | 61, 185, 332, 439, 1150, 1220, 1832 |
| MalI | GATC | 6 cut(s) | 389, 425, 713, 969, 1638, 1670 |
| MbiI | CCGCTC | 5 cut(s) | 270, 1270, 1510, 1588, 1742 |
| MboI | GATC | 6 cut(s) | 387, 423, 711, 967, 1636, 1668 |
| MboII | GAAGA | 4 cut(s) | 418, 701, 1273, 1720 |
| MflI | RGATCY | 3 cut(s) | 711, 967, 1668 |
| MhlI | GDGCHC | 3 cut(s) | 405, 802, 1377 |
| MlsI | TGGCCA | 2 cut(s) | 1731, 1841 |
| MluCI | AATT | 4 cut(s) | 644, 913, 1101, 1250 |
| MluNI | TGGCCA | 2 cut(s) | 1731, 1841 |
| Mly113I | GGCGCC | 2 cut(s) | 1079, 1513 |
| MlyI | GAGTC | 3 cut(s) | 77, 323, 1223 |
| MmeI | TCCRAC | 4 cut(s) | 454, 565, 621, 673 |
| Mox20I | TGGCCA | 2 cut(s) | 1731, 1841 |
| Mph1103I | ATGCAT | 1 cut(s) | 417 |
| MscI | TGGCCA | 2 cut(s) | 1731, 1841 |
| MseI | TTAA | 1 cut(s) | 636 |
| MslI | CAYNNNNRTG | 2 cut(s) | 507, 549 |
| Msp20I | TGGCCA | 2 cut(s) | 1731, 1841 |
| MspA1I | CMGCKG | 4 cut(s) | 717, 1541, 1678, 1769 |
| MspI | CCGG | 5 cut(s) | 160, 276, 603, 762, 1830 |
| MspR9I | CCNGG | 6 cut(s) | 160, 161, 599, 604, 1095, 1427 |
| Mva1269I | GAATGC | 1 cut(s) | 878 |
| MvaI | CCWGG | 3 cut(s) | 599, 1095, 1427 |
| MvnI | CGCG | 1 cut(s) | 717 |
| NarI | GGCGCC | 2 cut(s) | 1079, 1513 |
| NciI | CCSGG | 3 cut(s) | 160, 161, 604 |
| NcoI | CCATGG | 1 cut(s) | 891 |
| NdeI | CATATG | 1 cut(s) | 1243 |
| NdeII | GATC | 6 cut(s) | 387, 423, 711, 967, 1636, 1668 |
| NlaIII | CATG | 9 cut(s) | 175, 415, 419, 895, 931, 1397, 1601, 1813, 1840 |
| NlaIV | GGNNCC | 8 cut(s) | 274, 503, 522, 523, 713, 1080, 1092, 1514 |
| NmuCI | GTSAC | 7 cut(s) | 61, 185, 332, 439, 1150, 1220, 1832 |
| NsiI | ATGCAT | 1 cut(s) | 417 |
| NspI | RCATGY | 1 cut(s) | 931 |
| OliI | CACNNNNGTG | 1 cut(s) | 507 |
| PctI | GAATGC | 1 cut(s) | 878 |
| PfeI | GAWTC | 6 cut(s) | 35, 111, 845, 1323, 1682, 1858 |
| PflFI | GACNNNGTC | 1 cut(s) | 1598 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1300 |
| PinAI | ACCGGT | 1 cut(s) | 761 |
| PleI | GAGTC | 3 cut(s) | 77, 322, 1223 |
| PluTI | GGCGCC | 2 cut(s) | 1082, 1516 |
| PpsI | GAGTC | 3 cut(s) | 77, 322, 1223 |
| PpuMI | RGGWCCY | 1 cut(s) | 521 |
| Psp5II | RGGWCCY | 1 cut(s) | 521 |
| Psp6I | CCWGG | 3 cut(s) | 597, 1093, 1425 |
| PspEI | GGTNACC | 1 cut(s) | 185 |
| PspFI | CCCAGC | 1 cut(s) | 559 |
| PspGI | CCWGG | 3 cut(s) | 597, 1093, 1425 |
| PspN4I | GGNNCC | 8 cut(s) | 274, 503, 522, 523, 713, 1080, 1092, 1514 |
| PspPI | GGNCC | 4 cut(s) | 362, 521, 895, 1624 |
| PspPPI | RGGWCCY | 1 cut(s) | 521 |
| PstI | CTGCAG | 1 cut(s) | 109 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1426 |
| PsuI | RGATCY | 3 cut(s) | 711, 967, 1668 |
| PsyI | GACNNNGTC | 1 cut(s) | 1598 |
| PvuII | CAGCTG | 1 cut(s) | 1678 |
| RsaI | GTAC | 1 cut(s) | 812 |
| RsaNI | GTAC | 1 cut(s) | 811 |
| RseI | CAYNNNNRTG | 2 cut(s) | 507, 549 |
| SacII | CCGCGG | 1 cut(s) | 718 |
| SaqAI | TTAA | 1 cut(s) | 636 |
| Sau3AI | GATC | 6 cut(s) | 387, 423, 711, 967, 1636, 1668 |
| Sau96I | GGNCC | 4 cut(s) | 362, 521, 895, 1624 |
| SbfI | CCTGCAGG | 1 cut(s) | 109 |
| SchI | GAGTC | 3 cut(s) | 77, 323, 1223 |
| ScrFI | CCNGG | 6 cut(s) | 160, 161, 599, 604, 1095, 1427 |
| SdaI | CCTGCAGG | 1 cut(s) | 109 |
| SduI | GDGCHC | 3 cut(s) | 405, 802, 1377 |
| SfaNI | GCATC | 3 cut(s) | 1492, 1525, 1534 |
| SfcI | CTRYAG | 3 cut(s) | 105, 146, 1357 |
| SfoI | GGCGCC | 2 cut(s) | 1080, 1514 |
| Sfr303I | CCGCGG | 1 cut(s) | 718 |
| SgrBI | CCGCGG | 1 cut(s) | 718 |
| SinI | GGWCC | 3 cut(s) | 362, 521, 895 |
| SmaI | CCCGGG | 1 cut(s) | 161 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 507, 549 |
| SmlI | CTYRAG | 2 cut(s) | 872, 1265 |
| SmoI | CTYRAG | 2 cut(s) | 872, 1265 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 109 |
| Sse9I | AATT | 4 cut(s) | 644, 913, 1101, 1250 |
| SspDI | GGCGCC | 2 cut(s) | 1078, 1512 |
| SspMI | CTAG | 5 cut(s) | 45, 131, 201, 939, 1610 |
| StyD4I | CCNGG | 6 cut(s) | 158, 159, 597, 602, 1093, 1425 |
| StyI | CCWWGG | 5 cut(s) | 802, 891, 1086, 1521, 1650 |
| TaiI | ACGT | 4 cut(s) | 12, 63, 1057, 1584 |
| TaqI | TCGA | 6 cut(s) | 348, 386, 608, 687, 1227, 1875 |
| TaqII | GACCGA | 1 cut(s) | 379 |
| TasI | AATT | 4 cut(s) | 644, 913, 1101, 1250 |
| TfiI | GAWTC | 6 cut(s) | 35, 111, 845, 1323, 1682, 1858 |
| Tru1I | TTAA | 1 cut(s) | 636 |
| Tru9I | TTAA | 1 cut(s) | 636 |
| TseFI | GTSAC | 7 cut(s) | 61, 185, 332, 439, 1150, 1220, 1832 |
| Tsp45I | GTSAC | 7 cut(s) | 61, 185, 332, 439, 1150, 1220, 1832 |
| TspDTI | ATGAA | 3 cut(s) | 84, 302, 923 |
| TspGWI | ACGGA | 4 cut(s) | 28, 80, 386, 1274 |
| TspMI | CCCGGG | 1 cut(s) | 159 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1598 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1300 |
| VpaK11BI | GGWCC | 3 cut(s) | 362, 521, 895 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 1520, 1631 |
| XapI | RAATTY | 2 cut(s) | 644, 1250 |
| XceI | RCATGY | 1 cut(s) | 931 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1423 |
| XmaI | CCCGGG | 1 cut(s) | 159 |
| XspI | CTAG | 5 cut(s) | 45, 131, 201, 939, 1610 |
| Zsp2I | ATGCAT | 1 cut(s) | 417 |