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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 145 |
| AciI | CCGC | 7 cut(s) | 84, 127, 168, 275, 323, 373, 444 |
| AclWI | GGATC | 2 cut(s) | 244, 257 |
| AcoI | YGGCCR | 2 cut(s) | 363, 441 |
| AcuI | CTGAAG | 1 cut(s) | 41 |
| AfaI | GTAC | 1 cut(s) | 34 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 319, 372, 430 |
| AjiI | CACGTC | 1 cut(s) | 379 |
| AjnI | CCWGG | 3 cut(s) | 28, 201, 252 |
| AleI | CACNNNNGTG | 1 cut(s) | 50 |
| AluBI | AGCT | 3 cut(s) | 10, 355, 406 |
| AluI | AGCT | 3 cut(s) | 10, 355, 406 |
| Alw26I | GTCTC | 2 cut(s) | 107, 403 |
| AlwI | GGATC | 2 cut(s) | 244, 257 |
| AoxI | GGCC | 5 cut(s) | 26, 123, 162, 363, 441 |
| ApaI | GGGCCC | 1 cut(s) | 127 |
| ApeKI | GCWGC | 1 cut(s) | 335 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 55, 87 |
| AspLEI | GCGC | 1 cut(s) | 145 |
| AspS9I | GGNCC | 4 cut(s) | 26, 123, 124, 163 |
| BaeGI | GKGCMC | 1 cut(s) | 127 |
| BalI | TGGCCA | 1 cut(s) | 365 |
| BamHI | GGATCC | 1 cut(s) | 249 |
| BanII | GRGCYC | 1 cut(s) | 127 |
| BbvI | GCAGC | 1 cut(s) | 322 |
| BceAI | ACGGC | 1 cut(s) | 51 |
| BcgI | CGANNNNNNTGC | 1 cut(s) | 37 |
| BciT130I | CCWGG | 3 cut(s) | 30, 203, 254 |
| BciVI | GTATCC | 1 cut(s) | 319 |
| BclI | TGATCA | 1 cut(s) | 391 |
| BcoDI | GTCTC | 2 cut(s) | 107, 403 |
| BfmI | CTRYAG | 2 cut(s) | 171, 336 |
| BfuI | GTATCC | 1 cut(s) | 319 |
| BisI | GCNGC | 2 cut(s) | 336, 444 |
| BlsI | GCNGC | 2 cut(s) | 337, 445 |
| Bme1390I | CCNGG | 3 cut(s) | 30, 203, 254 |
| BmgBI | CACGTC | 1 cut(s) | 379 |
| BmgT120I | GGNCC | 4 cut(s) | 26, 123, 124, 163 |
| BmiI | GGNNCC | 6 cut(s) | 27, 124, 125, 165, 189, 251 |
| BmrFI | CCNGG | 3 cut(s) | 30, 203, 254 |
| BmsI | GCATC | 2 cut(s) | 322, 331 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 172, 204 |
| BpmI | CTGGAG | 1 cut(s) | 449 |
| BpuEI | CTTGAG | 1 cut(s) | 281 |
| BsaI | GGTCTC | 1 cut(s) | 107 |
| BsaJI | CCNNGG | 4 cut(s) | 159, 253, 346, 447 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 319, 372, 430 |
| BseBI | CCWGG | 3 cut(s) | 30, 203, 254 |
| BseDI | CCNNGG | 4 cut(s) | 159, 253, 346, 447 |
| BseGI | GGATG | 1 cut(s) | 109 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 319, 372, 430 |
| BseRI | GAGGAG | 2 cut(s) | 20, 113 |
| BseSI | GKGCMC | 1 cut(s) | 127 |
| BseXI | GCAGC | 1 cut(s) | 322 |
| Bsh1236I | CGCG | 1 cut(s) | 145 |
| BshFI | GGCC | 5 cut(s) | 28, 125, 164, 365, 443 |
| BslFI | GGGAC | 2 cut(s) | 389, 406 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 319, 372, 430 |
| BsmAI | GTCTC | 2 cut(s) | 107, 403 |
| BsmFI | GGGAC | 2 cut(s) | 389, 406 |
| BsnI | GGCC | 5 cut(s) | 28, 125, 164, 365, 443 |
| Bso31I | GGTCTC | 1 cut(s) | 107 |
| Bsp120I | GGGCCC | 1 cut(s) | 123 |
| Bsp1286I | GDGCHC | 1 cut(s) | 127 |
| Bsp143I | GATC | 2 cut(s) | 249, 391 |
| BspACI | CCGC | 7 cut(s) | 84, 127, 168, 275, 323, 373, 444 |
| BspANI | GGCC | 5 cut(s) | 28, 125, 164, 365, 443 |
| BspFNI | CGCG | 1 cut(s) | 145 |
| BspHI | TCATGA | 1 cut(s) | 232 |
| BspLI | GGNNCC | 6 cut(s) | 27, 124, 125, 165, 189, 251 |
| BspMAI | CTGCAG | 1 cut(s) | 340 |
| BspPI | GGATC | 2 cut(s) | 244, 257 |
| BspTNI | GGTCTC | 1 cut(s) | 107 |
| BssECI | CCNNGG | 4 cut(s) | 159, 253, 346, 447 |
| BssMI | GATC | 2 cut(s) | 249, 391 |
| BssT1I | CCWWGG | 2 cut(s) | 159, 447 |
| Bst2UI | CCWGG | 3 cut(s) | 30, 203, 254 |
| Bst6I | CTCTTC | 1 cut(s) | 90 |
| BstC8I | GCNNGC | 4 cut(s) | 12, 127, 217, 353 |
| BstDSI | CCRYGG | 1 cut(s) | 346 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 317, 428 |
| BstF5I | GGATG | 1 cut(s) | 109 |
| BstFNI | CGCG | 1 cut(s) | 145 |
| BstHHI | GCGC | 1 cut(s) | 145 |
| BstKTI | GATC | 2 cut(s) | 252, 394 |
| BstMAI | GTCTC | 2 cut(s) | 107, 403 |
| BstMBI | GATC | 2 cut(s) | 249, 391 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 341 |
| BstNI | CCWGG | 3 cut(s) | 30, 203, 254 |
| BstNSI | RCATGY | 1 cut(s) | 421 |
| BstSCI | CCNGG | 3 cut(s) | 28, 201, 252 |
| BstSFI | CTRYAG | 2 cut(s) | 171, 336 |
| BstSLI | GKGCMC | 1 cut(s) | 127 |
| BstUI | CGCG | 1 cut(s) | 145 |
| BstV1I | GCAGC | 1 cut(s) | 322 |
| BstX2I | RGATCY | 1 cut(s) | 249 |
| BstYI | RGATCY | 1 cut(s) | 249 |
| BsuI | GTATCC | 1 cut(s) | 319 |
| BsuRI | GGCC | 5 cut(s) | 28, 125, 164, 365, 443 |
| BtgI | CCRYGG | 1 cut(s) | 346 |
| BtrI | CACGTC | 1 cut(s) | 379 |
| BtsCI | GGATG | 1 cut(s) | 109 |
| Cac8I | GCNNGC | 4 cut(s) | 12, 127, 217, 353 |
| CciI | TCATGA | 1 cut(s) | 232 |
| CfoI | GCGC | 1 cut(s) | 145 |
| Cfr13I | GGNCC | 4 cut(s) | 26, 123, 124, 163 |
| Csp6I | GTAC | 1 cut(s) | 33 |
| CviAII | CATG | 3 cut(s) | 233, 395, 418 |
| CviQI | GTAC | 1 cut(s) | 33 |
| DpnI | GATC | 2 cut(s) | 251, 393 |
| DpnII | GATC | 2 cut(s) | 249, 391 |
| EaeI | YGGCCR | 2 cut(s) | 363, 441 |
| Eam1104I | CTCTTC | 1 cut(s) | 90 |
| EarI | CTCTTC | 1 cut(s) | 90 |
| EciI | GGCGGA | 3 cut(s) | 73, 290, 338 |
| Eco130I | CCWWGG | 2 cut(s) | 159, 447 |
| Eco24I | GRGCYC | 1 cut(s) | 127 |
| Eco31I | GGTCTC | 1 cut(s) | 107 |
| Eco57I | CTGAAG | 1 cut(s) | 41 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 317, 428 |
| EcoO109I | RGGNCCY | 3 cut(s) | 26, 123, 163 |
| EcoRII | CCWGG | 3 cut(s) | 28, 201, 252 |
| EcoT14I | CCWWGG | 2 cut(s) | 159, 447 |
| EcoT38I | GRGCYC | 1 cut(s) | 127 |
| ErhI | CCWWGG | 2 cut(s) | 159, 447 |
| FaeI | CATG | 3 cut(s) | 236, 398, 421 |
| FaiI | YATR | 3 cut(s) | 234, 396, 419 |
| FaqI | GGGAC | 2 cut(s) | 389, 406 |
| FatI | CATG | 3 cut(s) | 232, 394, 417 |
| FauI | CCCGC | 3 cut(s) | 134, 175, 366 |
| FbaI | TGATCA | 1 cut(s) | 391 |
| Fnu4HI | GCNGC | 2 cut(s) | 336, 444 |
| FokI | GGATG | 1 cut(s) | 116 |
| FriOI | GRGCYC | 1 cut(s) | 127 |
| Fsp4HI | GCNGC | 2 cut(s) | 336, 444 |
| GlaI | GCGC | 1 cut(s) | 144 |
| GluI | GCNGC | 2 cut(s) | 336, 444 |
| GsuI | CTGGAG | 1 cut(s) | 449 |
| HaeIII | GGCC | 5 cut(s) | 28, 125, 164, 365, 443 |
| HhaI | GCGC | 1 cut(s) | 145 |
| Hin1II | CATG | 3 cut(s) | 236, 398, 421 |
| Hin6I | GCGC | 1 cut(s) | 143 |
| HinP1I | GCGC | 1 cut(s) | 143 |
| HincII | GTYRAC | 1 cut(s) | 74 |
| HindII | GTYRAC | 1 cut(s) | 74 |
| HinfI | GANTC | 3 cut(s) | 20, 80, 206 |
| Hpy166II | GTNNAC | 1 cut(s) | 74 |
| Hpy188III | TCNNGA | 2 cut(s) | 233, 260 |
| Hpy8I | GTNNAC | 1 cut(s) | 74 |
| Hpy99I | CGWCG | 1 cut(s) | 72 |
| HpyAV | CCTTC | 1 cut(s) | 133 |
| HpyCH4IV | ACGT | 1 cut(s) | 378 |
| HpyCH4V | TGCA | 1 cut(s) | 338 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 341 |
| HpySE526I | ACGT | 1 cut(s) | 378 |
| Hsp92II | CATG | 3 cut(s) | 236, 398, 421 |
| HspAI | GCGC | 1 cut(s) | 143 |
| Ksp22I | TGATCA | 1 cut(s) | 391 |
| Kzo9I | GATC | 2 cut(s) | 249, 391 |
| LmnI | GCTCC | 2 cut(s) | 7, 193 |
| Lsp1109I | GCAGC | 1 cut(s) | 322 |
| LweI | GCATC | 2 cut(s) | 322, 331 |
| MaeII | ACGT | 1 cut(s) | 378 |
| MalI | GATC | 2 cut(s) | 251, 393 |
| MboI | GATC | 2 cut(s) | 249, 391 |
| MboII | GAAGA | 2 cut(s) | 107, 148 |
| MflI | RGATCY | 1 cut(s) | 249 |
| MhlI | GDGCHC | 1 cut(s) | 127 |
| MlsI | TGGCCA | 1 cut(s) | 365 |
| MluNI | TGGCCA | 1 cut(s) | 365 |
| MlyI | GAGTC | 2 cut(s) | 29, 74 |
| Mox20I | TGGCCA | 1 cut(s) | 365 |
| MscI | TGGCCA | 1 cut(s) | 365 |
| MseI | TTAA | 1 cut(s) | 454 |
| MslI | CAYNNNNRTG | 1 cut(s) | 50 |
| Msp20I | TGGCCA | 1 cut(s) | 365 |
| MspA1I | CMGCKG | 2 cut(s) | 170, 373 |
| MspR9I | CCNGG | 3 cut(s) | 30, 203, 254 |
| MvaI | CCWGG | 3 cut(s) | 30, 203, 254 |
| MvnI | CGCG | 1 cut(s) | 145 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 341 |
| NdeII | GATC | 2 cut(s) | 249, 391 |
| NlaIII | CATG | 3 cut(s) | 236, 398, 421 |
| NlaIV | GGNNCC | 6 cut(s) | 27, 124, 125, 165, 189, 251 |
| NspI | RCATGY | 1 cut(s) | 421 |
| OliI | CACNNNNGTG | 1 cut(s) | 50 |
| PagI | TCATGA | 1 cut(s) | 232 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 84 |
| PfeI | GAWTC | 1 cut(s) | 206 |
| PkrI | GCNGC | 2 cut(s) | 337, 445 |
| PleI | GAGTC | 2 cut(s) | 28, 74 |
| PpsI | GAGTC | 2 cut(s) | 28, 74 |
| Psp6I | CCWGG | 3 cut(s) | 28, 201, 252 |
| PspGI | CCWGG | 3 cut(s) | 28, 201, 252 |
| PspN4I | GGNNCC | 6 cut(s) | 27, 124, 125, 165, 189, 251 |
| PspOMI | GGGCCC | 1 cut(s) | 123 |
| PspPI | GGNCC | 4 cut(s) | 26, 123, 124, 163 |
| PstI | CTGCAG | 1 cut(s) | 340 |
| PsuI | RGATCY | 1 cut(s) | 249 |
| RsaI | GTAC | 1 cut(s) | 34 |
| RsaNI | GTAC | 1 cut(s) | 33 |
| RseI | CAYNNNNRTG | 1 cut(s) | 50 |
| SaqAI | TTAA | 1 cut(s) | 454 |
| SatI | GCNGC | 2 cut(s) | 336, 444 |
| Sau3AI | GATC | 2 cut(s) | 249, 391 |
| Sau96I | GGNCC | 4 cut(s) | 26, 123, 124, 163 |
| SchI | GAGTC | 2 cut(s) | 29, 74 |
| ScrFI | CCNGG | 3 cut(s) | 30, 203, 254 |
| SduI | GDGCHC | 1 cut(s) | 127 |
| SetI | ASST | 8 cut(s) | 12, 154, 204, 293, 303, 357, 381, 408 |
| SfaNI | GCATC | 2 cut(s) | 322, 331 |
| SfcI | CTRYAG | 2 cut(s) | 171, 336 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 50 |
| SmlI | CTYRAG | 1 cut(s) | 260 |
| SmoI | CTYRAG | 1 cut(s) | 260 |
| SsiI | CCGC | 7 cut(s) | 84, 127, 168, 275, 323, 373, 444 |
| StyD4I | CCNGG | 3 cut(s) | 28, 201, 252 |
| StyI | CCWWGG | 2 cut(s) | 159, 447 |
| TaiI | ACGT | 1 cut(s) | 381 |
| TauI | GCSGC | 1 cut(s) | 446 |
| TfiI | GAWTC | 1 cut(s) | 206 |
| Tru1I | TTAA | 1 cut(s) | 454 |
| Tru9I | TTAA | 1 cut(s) | 454 |
| TseI | GCWGC | 1 cut(s) | 335 |
| TspDTI | ATGAA | 1 cut(s) | 221 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 317, 428 |
| XceI | RCATGY | 1 cut(s) | 421 |