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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 234 |
| AccB1I | GGYRCC | 1 cut(s) | 250 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 88 |
| AccBSI | CCGCTC | 1 cut(s) | 730 |
| AccII | CGCG | 1 cut(s) | 195 |
| AclWI | GGATC | 1 cut(s) | 12 |
| AcsI | RAATTY | 2 cut(s) | 471, 494 |
| AcuI | CTGAAG | 1 cut(s) | 507 |
| AcyI | GRCGYC | 1 cut(s) | 251 |
| AfaI | GTAC | 3 cut(s) | 41, 219, 361 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 88, 106, 267 |
| AgeI | ACCGGT | 1 cut(s) | 356 |
| AgsI | TTSAA | 3 cut(s) | 566, 636, 677 |
| AjnI | CCWGG | 2 cut(s) | 429, 624 |
| AluBI | AGCT | 2 cut(s) | 182, 582 |
| AluI | AGCT | 2 cut(s) | 182, 582 |
| AlwI | GGATC | 1 cut(s) | 12 |
| AoxI | GGCC | 4 cut(s) | 57, 148, 444, 708 |
| ApaI | GGGCCC | 1 cut(s) | 448 |
| ApeKI | GCWGC | 6 cut(s) | 121, 130, 235, 328, 610, 640 |
| ApoI | RAATTY | 2 cut(s) | 471, 494 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 10, 42 |
| AsiGI | ACCGGT | 1 cut(s) | 356 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 681 |
| AspLEI | GCGC | 3 cut(s) | 235, 253, 285 |
| AspS9I | GGNCC | 6 cut(s) | 58, 149, 270, 444, 445, 547 |
| AsuC2I | CCSGG | 2 cut(s) | 287, 687 |
| AsuHPI | GGTGA | 1 cut(s) | 106 |
| AvaII | GGWCC | 2 cut(s) | 270, 547 |
| AxyI | CCTNAGG | 2 cut(s) | 275, 645 |
| BaeGI | GKGCMC | 1 cut(s) | 448 |
| BanI | GGYRCC | 1 cut(s) | 250 |
| BanII | GRGCYC | 1 cut(s) | 448 |
| BbsI | GAAGAC | 2 cut(s) | 466, 674 |
| BbvI | GCAGC | 6 cut(s) | 108, 117, 247, 340, 597, 652 |
| BccI | CCATC | 1 cut(s) | 533 |
| BceAI | ACGGC | 1 cut(s) | 559 |
| BciT130I | CCWGG | 2 cut(s) | 431, 626 |
| BcnI | CCSGG | 2 cut(s) | 287, 687 |
| BfmI | CTRYAG | 1 cut(s) | 363 |
| BfoI | RGCGCY | 2 cut(s) | 254, 286 |
| Bme1390I | CCNGG | 4 cut(s) | 287, 431, 626, 687 |
| Bme18I | GGWCC | 2 cut(s) | 270, 547 |
| BmgT120I | GGNCC | 6 cut(s) | 58, 149, 270, 444, 445, 547 |
| BmiI | GGNNCC | 8 cut(s) | 111, 187, 212, 252, 271, 272, 445, 446 |
| BmrFI | CCNGG | 4 cut(s) | 287, 431, 626, 687 |
| BmsI | GCATC | 2 cut(s) | 664, 691 |
| BoxI | GACNNNNGTC | 1 cut(s) | 268 |
| BpiI | GAAGAC | 2 cut(s) | 466, 674 |
| BpmI | CTGGAG | 2 cut(s) | 74, 204 |
| Bpu10I | CCTNAGC | 1 cut(s) | 705 |
| BpuEI | CTTGAG | 1 cut(s) | 325 |
| BpuMI | CCSGG | 2 cut(s) | 287, 687 |
| BsaHI | GRCGYC | 1 cut(s) | 251 |
| BsaJI | CCNNGG | 3 cut(s) | 165, 625, 686 |
| BsaWI | WCCGGW | 1 cut(s) | 356 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 23, 53 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 88, 106, 267 |
| Bse118I | RCCGGY | 1 cut(s) | 356 |
| Bse1I | ACTGG | 4 cut(s) | 93, 100, 540, 720 |
| Bse21I | CCTNAGG | 2 cut(s) | 275, 645 |
| BseBI | CCWGG | 2 cut(s) | 431, 626 |
| BseDI | CCNNGG | 3 cut(s) | 165, 625, 686 |
| BseGI | GGATG | 3 cut(s) | 421, 544, 706 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 88, 106, 267 |
| BseMII | CTCAG | 3 cut(s) | 266, 636, 719 |
| BseNI | ACTGG | 4 cut(s) | 93, 100, 540, 720 |
| BseSI | GKGCMC | 1 cut(s) | 448 |
| BseXI | GCAGC | 6 cut(s) | 108, 117, 247, 340, 597, 652 |
| BseYI | CCCAGC | 2 cut(s) | 47, 520 |
| BsgI | GTGCAG | 1 cut(s) | 116 |
| Bsh1236I | CGCG | 1 cut(s) | 195 |
| BshFI | GGCC | 4 cut(s) | 59, 150, 446, 710 |
| BshNI | GGYRCC | 1 cut(s) | 250 |
| BshTI | ACCGGT | 1 cut(s) | 356 |
| BsiSI | CCGG | 3 cut(s) | 286, 357, 686 |
| BslFI | GGGAC | 2 cut(s) | 256, 556 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 88, 106, 267 |
| BsmFI | GGGAC | 2 cut(s) | 256, 556 |
| BsmI | GAATGC | 1 cut(s) | 587 |
| BsnI | GGCC | 4 cut(s) | 59, 150, 446, 710 |
| Bsp120I | GGGCCC | 1 cut(s) | 444 |
| Bsp1286I | GDGCHC | 1 cut(s) | 448 |
| Bsp143I | GATC | 1 cut(s) | 4 |
| BspANI | GGCC | 4 cut(s) | 59, 150, 446, 710 |
| BspCNI | CTCAG | 3 cut(s) | 267, 637, 718 |
| BspFNI | CGCG | 1 cut(s) | 195 |
| BspLI | GGNNCC | 8 cut(s) | 111, 187, 212, 252, 271, 272, 445, 446 |
| BspPI | GGATC | 1 cut(s) | 12 |
| BspT107I | GGYRCC | 1 cut(s) | 250 |
| BsrBI | CCGCTC | 1 cut(s) | 730 |
| BsrFI | RCCGGY | 1 cut(s) | 356 |
| BsrI | ACTGG | 4 cut(s) | 93, 100, 540, 720 |
| BssAI | RCCGGY | 1 cut(s) | 356 |
| BssECI | CCNNGG | 3 cut(s) | 165, 625, 686 |
| BssMI | GATC | 1 cut(s) | 4 |
| BssNI | GRCGYC | 1 cut(s) | 251 |
| Bst2UI | CCWGG | 2 cut(s) | 431, 626 |
| Bst4CI | ACNGT | 3 cut(s) | 158, 404, 547 |
| BstACI | GRCGYC | 1 cut(s) | 251 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 661 |
| BstC8I | GCNNGC | 1 cut(s) | 255 |
| BstDEI | CTNAG | 3 cut(s) | 275, 645, 705 |
| BstDSI | CCRYGG | 1 cut(s) | 165 |
| BstF5I | GGATG | 3 cut(s) | 421, 544, 706 |
| BstFNI | CGCG | 1 cut(s) | 195 |
| BstH2I | RGCGCY | 2 cut(s) | 254, 286 |
| BstHHI | GCGC | 3 cut(s) | 235, 253, 285 |
| BstKTI | GATC | 1 cut(s) | 7 |
| BstMBI | GATC | 1 cut(s) | 4 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 127, 130, 314, 385, 661 |
| BstNI | CCWGG | 2 cut(s) | 431, 626 |
| BstNSI | RCATGY | 1 cut(s) | 40 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 268 |
| BstSCI | CCNGG | 4 cut(s) | 285, 429, 624, 685 |
| BstSFI | CTRYAG | 1 cut(s) | 363 |
| BstSLI | GKGCMC | 1 cut(s) | 448 |
| BstUI | CGCG | 1 cut(s) | 195 |
| BstV1I | GCAGC | 6 cut(s) | 108, 117, 247, 340, 597, 652 |
| BstV2I | GAAGAC | 2 cut(s) | 466, 674 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 718 |
| Bsu36I | CCTNAGG | 2 cut(s) | 275, 645 |
| BsuRI | GGCC | 4 cut(s) | 59, 150, 446, 710 |
| BtgI | CCRYGG | 1 cut(s) | 165 |
| BtsCI | GGATG | 3 cut(s) | 421, 544, 706 |
| BtsIMutI | CAGTG | 2 cut(s) | 86, 409 |
| Cac8I | GCNNGC | 1 cut(s) | 255 |
| CfoI | GCGC | 3 cut(s) | 235, 253, 285 |
| Cfr10I | RCCGGY | 1 cut(s) | 356 |
| Cfr13I | GGNCC | 6 cut(s) | 58, 149, 270, 444, 445, 547 |
| CpoI | CGGWCCG | 1 cut(s) | 547 |
| Csp6I | GTAC | 3 cut(s) | 40, 218, 360 |
| CspAI | ACCGGT | 1 cut(s) | 356 |
| CspI | CGGWCCG | 1 cut(s) | 547 |
| CviAII | CATG | 3 cut(s) | 37, 266, 614 |
| CviQI | GTAC | 3 cut(s) | 40, 218, 360 |
| DdeI | CTNAG | 3 cut(s) | 275, 645, 705 |
| DinI | GGCGCC | 1 cut(s) | 252 |
| DpnI | GATC | 1 cut(s) | 6 |
| DpnII | GATC | 1 cut(s) | 4 |
| EciI | GGCGGA | 1 cut(s) | 539 |
| Eco24I | GRGCYC | 1 cut(s) | 448 |
| Eco47I | GGWCC | 2 cut(s) | 270, 547 |
| Eco57I | CTGAAG | 1 cut(s) | 507 |
| Eco81I | CCTNAGG | 2 cut(s) | 275, 645 |
| EcoO109I | RGGNCCY | 2 cut(s) | 270, 444 |
| EcoRII | CCWGG | 2 cut(s) | 429, 624 |
| EcoT38I | GRGCYC | 1 cut(s) | 448 |
| EgeI | GGCGCC | 1 cut(s) | 252 |
| EheI | GGCGCC | 1 cut(s) | 252 |
| FaeI | CATG | 3 cut(s) | 40, 269, 617 |
| FaiI | YATR | 4 cut(s) | 38, 267, 348, 615 |
| FaqI | GGGAC | 2 cut(s) | 256, 556 |
| FatI | CATG | 3 cut(s) | 36, 265, 613 |
| FauI | CCCGC | 3 cut(s) | 262, 310, 657 |
| FokI | GGATG | 3 cut(s) | 428, 551, 713 |
| FriOI | GRGCYC | 1 cut(s) | 448 |
| FspI | TGCGCA | 1 cut(s) | 234 |
| GlaI | GCGC | 3 cut(s) | 234, 252, 284 |
| GsaI | CCCAGC | 2 cut(s) | 51, 524 |
| GsuI | CTGGAG | 2 cut(s) | 74, 204 |
| HaeII | RGCGCY | 2 cut(s) | 254, 286 |
| HaeIII | GGCC | 4 cut(s) | 59, 150, 446, 710 |
| HapII | CCGG | 3 cut(s) | 286, 357, 686 |
| HhaI | GCGC | 3 cut(s) | 235, 253, 285 |
| Hin1I | GRCGYC | 1 cut(s) | 251 |
| Hin1II | CATG | 3 cut(s) | 40, 269, 617 |
| Hin6I | GCGC | 3 cut(s) | 233, 251, 283 |
| HinP1I | GCGC | 3 cut(s) | 233, 251, 283 |
| HpaII | CCGG | 3 cut(s) | 286, 357, 686 |
| HphI | GGTGA | 1 cut(s) | 106 |
| Hpy188I | TCNGA | 2 cut(s) | 106, 487 |
| HpyAV | CCTTC | 1 cut(s) | 671 |
| HpyCH4III | ACNGT | 3 cut(s) | 158, 404, 547 |
| HpyCH4V | TGCA | 3 cut(s) | 133, 379, 613 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 127, 130, 314, 385, 661 |
| HpyF3I | CTNAG | 3 cut(s) | 275, 645, 705 |
| Hsp92I | GRCGYC | 1 cut(s) | 251 |
| Hsp92II | CATG | 3 cut(s) | 40, 269, 617 |
| HspAI | GCGC | 3 cut(s) | 233, 251, 283 |
| KasI | GGCGCC | 1 cut(s) | 250 |
| KflI | GGGWCCC | 1 cut(s) | 270 |
| Kzo9I | GATC | 1 cut(s) | 4 |
| LmnI | GCTCC | 6 cut(s) | 115, 185, 210, 280, 325, 727 |
| Lsp1109I | GCAGC | 6 cut(s) | 108, 117, 247, 340, 597, 652 |
| LweI | GCATC | 2 cut(s) | 664, 691 |
| MalI | GATC | 1 cut(s) | 6 |
| MbiI | CCGCTC | 1 cut(s) | 730 |
| MboI | GATC | 1 cut(s) | 4 |
| MboII | GAAGA | 5 cut(s) | 465, 468, 471, 674, 680 |
| MhlI | GDGCHC | 1 cut(s) | 448 |
| MluCI | AATT | 3 cut(s) | 14, 471, 494 |
| Mly113I | GGCGCC | 1 cut(s) | 251 |
| MmeI | TCCRAC | 1 cut(s) | 303 |
| MroXI | GAANNNNTTC | 1 cut(s) | 681 |
| MspA1I | CMGCKG | 1 cut(s) | 47 |
| MspI | CCGG | 3 cut(s) | 286, 357, 686 |
| MspR9I | CCNGG | 4 cut(s) | 287, 431, 626, 687 |
| Mva1269I | GAATGC | 1 cut(s) | 587 |
| MvaI | CCWGG | 2 cut(s) | 431, 626 |
| MvnI | CGCG | 1 cut(s) | 195 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 127, 130, 314, 385, 661 |
| NarI | GGCGCC | 1 cut(s) | 251 |
| NciI | CCSGG | 2 cut(s) | 287, 687 |
| NdeII | GATC | 1 cut(s) | 4 |
| NlaIII | CATG | 3 cut(s) | 40, 269, 617 |
| NlaIV | GGNNCC | 8 cut(s) | 111, 187, 212, 252, 271, 272, 445, 446 |
| NmeAIII | GCCGAG | 1 cut(s) | 563 |
| NsbI | TGCGCA | 1 cut(s) | 234 |
| NspI | RCATGY | 1 cut(s) | 40 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 162 |
| PctI | GAATGC | 1 cut(s) | 587 |
| PdmI | GAANNNNTTC | 1 cut(s) | 681 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 88 |
| PinAI | ACCGGT | 1 cut(s) | 356 |
| PluTI | GGCGCC | 1 cut(s) | 254 |
| PpuMI | RGGWCCY | 1 cut(s) | 270 |
| PshAI | GACNNNNGTC | 1 cut(s) | 268 |
| Psp5II | RGGWCCY | 1 cut(s) | 270 |
| Psp6I | CCWGG | 2 cut(s) | 429, 624 |
| PspFI | CCCAGC | 2 cut(s) | 47, 520 |
| PspGI | CCWGG | 2 cut(s) | 429, 624 |
| PspN4I | GGNNCC | 8 cut(s) | 111, 187, 212, 252, 271, 272, 445, 446 |
| PspOMI | GGGCCC | 1 cut(s) | 444 |
| PspPI | GGNCC | 6 cut(s) | 58, 149, 270, 444, 445, 547 |
| PspPPI | RGGWCCY | 1 cut(s) | 270 |
| RsaI | GTAC | 3 cut(s) | 41, 219, 361 |
| RsaNI | GTAC | 3 cut(s) | 40, 218, 360 |
| Rsr2I | CGGWCCG | 1 cut(s) | 547 |
| RsrII | CGGWCCG | 1 cut(s) | 547 |
| Sau3AI | GATC | 1 cut(s) | 4 |
| Sau96I | GGNCC | 6 cut(s) | 58, 149, 270, 444, 445, 547 |
| ScrFI | CCNGG | 4 cut(s) | 287, 431, 626, 687 |
| SduI | GDGCHC | 1 cut(s) | 448 |
| SetI | ASST | 5 cut(s) | 184, 223, 347, 584, 682 |
| SfaNI | GCATC | 2 cut(s) | 664, 691 |
| SfcI | CTRYAG | 1 cut(s) | 363 |
| SfoI | GGCGCC | 1 cut(s) | 252 |
| SinI | GGWCC | 2 cut(s) | 270, 547 |
| SmlI | CTYRAG | 1 cut(s) | 340 |
| SmoI | CTYRAG | 1 cut(s) | 340 |
| Sse9I | AATT | 3 cut(s) | 14, 471, 494 |
| SspDI | GGCGCC | 1 cut(s) | 250 |
| StyD4I | CCNGG | 4 cut(s) | 285, 429, 624, 685 |
| TaaI | ACNGT | 3 cut(s) | 158, 404, 547 |
| TaqI | TCGA | 2 cut(s) | 75, 293 |
| TasI | AATT | 3 cut(s) | 14, 471, 494 |
| TatI | WGTACW | 1 cut(s) | 39 |
| TauI | GCSGC | 4 cut(s) | 353, 391, 733, 736 |
| TscAI | CASTG | 2 cut(s) | 93, 409 |
| TseI | GCWGC | 6 cut(s) | 121, 130, 235, 328, 610, 640 |
| TspDTI | ATGAA | 1 cut(s) | 61 |
| TspGWI | ACGGA | 1 cut(s) | 581 |
| TspRI | CASTG | 2 cut(s) | 93, 409 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 88 |
| VpaK11BI | GGWCC | 2 cut(s) | 270, 547 |
| XapI | RAATTY | 2 cut(s) | 471, 494 |
| XceI | RCATGY | 1 cut(s) | 40 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 143, 437 |
| XmnI | GAANNNNTTC | 1 cut(s) | 681 |