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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 390, 851 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 453 |
| AccBSI | CCGCTC | 2 cut(s) | 133, 160 |
| AccI | GTMKAC | 1 cut(s) | 665 |
| AccII | CGCG | 4 cut(s) | 429, 698, 845, 950 |
| AclWI | GGATC | 2 cut(s) | 522, 541 |
| AcsI | RAATTY | 2 cut(s) | 806, 820 |
| AcuI | CTGAAG | 2 cut(s) | 530, 536 |
| AcyI | GRCGYC | 2 cut(s) | 224, 785 |
| AfaI | GTAC | 2 cut(s) | 107, 410 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 70, 133, 400, 453, 556, 637, 701, 929 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 478 |
| AjnI | CCWGG | 2 cut(s) | 216, 903 |
| AleI | CACNNNNGTG | 2 cut(s) | 153, 857 |
| AluBI | AGCT | 6 cut(s) | 253, 352, 373, 487, 692, 722 |
| AluI | AGCT | 6 cut(s) | 253, 352, 373, 487, 692, 722 |
| Alw21I | GWGCWC | 1 cut(s) | 287 |
| Alw26I | GTCTC | 2 cut(s) | 13, 344 |
| AlwI | GGATC | 2 cut(s) | 522, 541 |
| AoxI | GGCC | 8 cut(s) | 29, 179, 202, 269, 303, 313, 501, 639 |
| ApaI | GGGCCC | 1 cut(s) | 33 |
| ApeKI | GCWGC | 6 cut(s) | 4, 250, 416, 586, 830, 916 |
| ApoI | RAATTY | 2 cut(s) | 806, 820 |
| AspLEI | GCGC | 3 cut(s) | 176, 845, 952 |
| AspS9I | GGNCC | 7 cut(s) | 29, 30, 202, 269, 304, 314, 457 |
| AsuC2I | CCSGG | 1 cut(s) | 307 |
| AsuHPI | GGTGA | 7 cut(s) | 140, 448, 611, 758, 767, 871, 944 |
| AsuNHI | GCTAGC | 1 cut(s) | 35 |
| AvaII | GGWCC | 1 cut(s) | 457 |
| AxyI | CCTNAGG | 1 cut(s) | 324 |
| BaeGI | GKGCMC | 1 cut(s) | 33 |
| BanI | GGYRCC | 2 cut(s) | 390, 851 |
| BanII | GRGCYC | 1 cut(s) | 33 |
| BauI | CACGAG | 1 cut(s) | 280 |
| Bbv12I | GWGCWC | 1 cut(s) | 287 |
| BbvCI | CCTCAGC | 1 cut(s) | 723 |
| BbvI | GCAGC | 5 cut(s) | 262, 403, 598, 842, 928 |
| BccI | CCATC | 2 cut(s) | 455, 923 |
| BceAI | ACGGC | 5 cut(s) | 303, 328, 629, 658, 865 |
| BciT130I | CCWGG | 2 cut(s) | 218, 905 |
| BcnI | CCSGG | 1 cut(s) | 307 |
| BcoDI | GTCTC | 2 cut(s) | 13, 344 |
| BfaI | CTAG | 3 cut(s) | 36, 89, 254 |
| BfoI | RGCGCY | 1 cut(s) | 177 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 679 |
| Bme1390I | CCNGG | 3 cut(s) | 218, 307, 905 |
| Bme18I | GGWCC | 1 cut(s) | 457 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 478 |
| BmgT120I | GGNCC | 7 cut(s) | 29, 30, 202, 269, 304, 314, 457 |
| BmiI | GGNNCC | 8 cut(s) | 30, 31, 59, 392, 458, 629, 711, 853 |
| BmrFI | CCNGG | 3 cut(s) | 218, 307, 905 |
| BmrI | ACTGGG | 1 cut(s) | 655 |
| BmsI | GCATC | 5 cut(s) | 3, 403, 412, 665, 760 |
| BmtI | GCTAGC | 1 cut(s) | 39 |
| BmuI | ACTGGG | 1 cut(s) | 655 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 676, 708 |
| BpmI | CTGGAG | 2 cut(s) | 326, 509 |
| Bpu10I | CCTNAGC | 3 cut(s) | 129, 723, 736 |
| BpuEI | CTTGAG | 2 cut(s) | 446, 702 |
| BpuMI | CCSGG | 1 cut(s) | 307 |
| BsaHI | GRCGYC | 2 cut(s) | 224, 785 |
| BsaI | GGTCTC | 2 cut(s) | 13, 344 |
| BsaJI | CCNNGG | 1 cut(s) | 855 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 70, 133, 400, 453, 556, 637, 701, 929 |
| Bse118I | RCCGGY | 2 cut(s) | 773, 922 |
| Bse1I | ACTGG | 3 cut(s) | 525, 618, 661 |
| Bse21I | CCTNAGG | 1 cut(s) | 324 |
| BseBI | CCWGG | 2 cut(s) | 218, 905 |
| BseDI | CCNNGG | 1 cut(s) | 855 |
| BseGI | GGATG | 3 cut(s) | 656, 775, 934 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 70, 133, 400, 453, 556, 637, 701, 929 |
| BseMII | CTCAG | 6 cut(s) | 120, 315, 591, 660, 714, 750 |
| BseNI | ACTGG | 3 cut(s) | 525, 618, 661 |
| BseRI | GAGGAG | 1 cut(s) | 341 |
| BseSI | GKGCMC | 1 cut(s) | 33 |
| BseXI | GCAGC | 5 cut(s) | 262, 403, 598, 842, 928 |
| BseYI | CCCAGC | 4 cut(s) | 163, 352, 483, 763 |
| BsgI | GTGCAG | 1 cut(s) | 605 |
| Bsh1236I | CGCG | 4 cut(s) | 429, 698, 845, 950 |
| BshFI | GGCC | 8 cut(s) | 31, 181, 204, 271, 305, 315, 503, 641 |
| BshNI | GGYRCC | 2 cut(s) | 390, 851 |
| BsiHKAI | GWGCWC | 1 cut(s) | 287 |
| BsiSI | CCGG | 3 cut(s) | 307, 774, 923 |
| BslFI | GGGAC | 2 cut(s) | 466, 470 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 70, 133, 400, 453, 556, 637, 701, 929 |
| BsmAI | GTCTC | 2 cut(s) | 13, 344 |
| BsmFI | GGGAC | 2 cut(s) | 466, 470 |
| BsnI | GGCC | 8 cut(s) | 31, 181, 204, 271, 305, 315, 503, 641 |
| Bso31I | GGTCTC | 2 cut(s) | 13, 344 |
| Bsp120I | GGGCCC | 1 cut(s) | 29 |
| Bsp1286I | GDGCHC | 2 cut(s) | 33, 287 |
| Bsp143I | GATC | 4 cut(s) | 514, 546, 757, 910 |
| Bsp19I | CCATGG | 1 cut(s) | 855 |
| BspANI | GGCC | 8 cut(s) | 31, 181, 204, 271, 305, 315, 503, 641 |
| BspCNI | CTCAG | 6 cut(s) | 121, 316, 590, 661, 715, 749 |
| BspFNI | CGCG | 4 cut(s) | 429, 698, 845, 950 |
| BspLI | GGNNCC | 8 cut(s) | 30, 31, 59, 392, 458, 629, 711, 853 |
| BspOI | GCTAGC | 1 cut(s) | 39 |
| BspPI | GGATC | 2 cut(s) | 522, 541 |
| BspT107I | GGYRCC | 2 cut(s) | 390, 851 |
| BspTNI | GGTCTC | 2 cut(s) | 13, 344 |
| BsrBI | CCGCTC | 2 cut(s) | 133, 160 |
| BsrFI | RCCGGY | 2 cut(s) | 773, 922 |
| BsrI | ACTGG | 3 cut(s) | 525, 618, 661 |
| BssAI | RCCGGY | 2 cut(s) | 773, 922 |
| BssECI | CCNNGG | 1 cut(s) | 855 |
| BssMI | GATC | 4 cut(s) | 514, 546, 757, 910 |
| BssNI | GRCGYC | 2 cut(s) | 224, 785 |
| BssSI | CACGAG | 1 cut(s) | 280 |
| BssT1I | CCWWGG | 1 cut(s) | 855 |
| Bst2BI | CACGAG | 1 cut(s) | 280 |
| Bst2UI | CCWGG | 2 cut(s) | 218, 905 |
| Bst4CI | ACNGT | 1 cut(s) | 632 |
| Bst6I | CTCTTC | 2 cut(s) | 612, 617 |
| BstACI | GRCGYC | 2 cut(s) | 224, 785 |
| BstC8I | GCNNGC | 6 cut(s) | 33, 37, 56, 233, 292, 427 |
| BstDEI | CTNAG | 7 cut(s) | 129, 243, 324, 577, 669, 723, 736 |
| BstDSI | CCRYGG | 1 cut(s) | 855 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 398 |
| BstF5I | GGATG | 3 cut(s) | 656, 775, 934 |
| BstFNI | CGCG | 4 cut(s) | 429, 698, 845, 950 |
| BstH2I | RGCGCY | 1 cut(s) | 177 |
| BstHHI | GCGC | 3 cut(s) | 176, 845, 952 |
| BstKTI | GATC | 4 cut(s) | 517, 549, 760, 913 |
| BstMAI | GTCTC | 2 cut(s) | 13, 344 |
| BstMBI | GATC | 4 cut(s) | 514, 546, 757, 910 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 13, 55, 60, 291, 422, 679, 849 |
| BstNI | CCWGG | 2 cut(s) | 218, 905 |
| BstSCI | CCNGG | 3 cut(s) | 216, 305, 903 |
| BstSLI | GKGCMC | 1 cut(s) | 33 |
| BstUI | CGCG | 4 cut(s) | 429, 698, 845, 950 |
| BstV1I | GCAGC | 5 cut(s) | 262, 403, 598, 842, 928 |
| BstX2I | RGATCY | 1 cut(s) | 546 |
| BstYI | RGATCY | 1 cut(s) | 546 |
| Bsu36I | CCTNAGG | 1 cut(s) | 324 |
| BsuRI | GGCC | 8 cut(s) | 31, 181, 204, 271, 305, 315, 503, 641 |
| BtgI | CCRYGG | 1 cut(s) | 855 |
| BtsCI | GGATG | 3 cut(s) | 656, 775, 934 |
| BtsIMutI | CAGTG | 1 cut(s) | 8 |
| Cac8I | GCNNGC | 6 cut(s) | 33, 37, 56, 233, 292, 427 |
| CfoI | GCGC | 3 cut(s) | 176, 845, 952 |
| Cfr10I | RCCGGY | 2 cut(s) | 773, 922 |
| Cfr13I | GGNCC | 7 cut(s) | 29, 30, 202, 269, 304, 314, 457 |
| CseI | GACGC | 2 cut(s) | 213, 793 |
| Csp6I | GTAC | 2 cut(s) | 106, 409 |
| CviAII | CATG | 5 cut(s) | 206, 453, 476, 499, 856 |
| CviQI | GTAC | 2 cut(s) | 106, 409 |
| DdeI | CTNAG | 7 cut(s) | 129, 243, 324, 577, 669, 723, 736 |
| DpnI | GATC | 4 cut(s) | 516, 548, 759, 912 |
| DpnII | GATC | 4 cut(s) | 514, 546, 757, 910 |
| DriI | GACNNNNNGTC | 1 cut(s) | 478 |
| Eam1104I | CTCTTC | 2 cut(s) | 612, 617 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 478 |
| EarI | CTCTTC | 2 cut(s) | 612, 617 |
| EciI | GGCGGA | 1 cut(s) | 50 |
| Eco130I | CCWWGG | 1 cut(s) | 855 |
| Eco24I | GRGCYC | 1 cut(s) | 33 |
| Eco31I | GGTCTC | 2 cut(s) | 13, 344 |
| Eco47I | GGWCC | 1 cut(s) | 457 |
| Eco57I | CTGAAG | 2 cut(s) | 530, 536 |
| Eco81I | CCTNAGG | 1 cut(s) | 324 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 398 |
| EcoO109I | RGGNCCY | 2 cut(s) | 29, 457 |
| EcoRI | GAATTC | 1 cut(s) | 806 |
| EcoRII | CCWGG | 2 cut(s) | 216, 903 |
| EcoT14I | CCWWGG | 1 cut(s) | 855 |
| EcoT38I | GRGCYC | 1 cut(s) | 33 |
| ErhI | CCWWGG | 1 cut(s) | 855 |
| FaeI | CATG | 5 cut(s) | 209, 456, 479, 502, 859 |
| FaiI | YATR | 8 cut(s) | 191, 207, 454, 477, 500, 827, 857, 873 |
| FaqI | GGGAC | 2 cut(s) | 466, 470 |
| FatI | CATG | 5 cut(s) | 205, 452, 475, 498, 855 |
| FauI | CCCGC | 4 cut(s) | 40, 126, 549, 703 |
| FblI | GTMKAC | 1 cut(s) | 665 |
| FokI | GGATG | 3 cut(s) | 643, 782, 941 |
| FriOI | GRGCYC | 1 cut(s) | 33 |
| FspBI | CTAG | 3 cut(s) | 36, 89, 254 |
| GlaI | GCGC | 3 cut(s) | 175, 844, 951 |
| GsaI | CCCAGC | 4 cut(s) | 167, 356, 487, 767 |
| GsuI | CTGGAG | 2 cut(s) | 326, 509 |
| HaeII | RGCGCY | 1 cut(s) | 177 |
| HaeIII | GGCC | 8 cut(s) | 31, 181, 204, 271, 305, 315, 503, 641 |
| HapII | CCGG | 3 cut(s) | 307, 774, 923 |
| HgaI | GACGC | 2 cut(s) | 213, 793 |
| HhaI | GCGC | 3 cut(s) | 176, 845, 952 |
| Hin1I | GRCGYC | 2 cut(s) | 224, 785 |
| Hin1II | CATG | 5 cut(s) | 209, 456, 479, 502, 859 |
| Hin6I | GCGC | 3 cut(s) | 174, 843, 950 |
| HinP1I | GCGC | 3 cut(s) | 174, 843, 950 |
| HinfI | GANTC | 2 cut(s) | 92, 560 |
| HpaII | CCGG | 3 cut(s) | 307, 774, 923 |
| HphI | GGTGA | 7 cut(s) | 140, 448, 611, 758, 767, 871, 944 |
| Hpy166II | GTNNAC | 3 cut(s) | 106, 379, 666 |
| Hpy188I | TCNGA | 5 cut(s) | 78, 112, 580, 805, 889 |
| Hpy188III | TCNNGA | 3 cut(s) | 343, 535, 738 |
| Hpy8I | GTNNAC | 3 cut(s) | 106, 379, 666 |
| Hpy99I | CGWCG | 1 cut(s) | 229 |
| HpyAV | CCTTC | 3 cut(s) | 192, 505, 560 |
| HpyCH4III | ACNGT | 1 cut(s) | 632 |
| HpyCH4IV | ACGT | 1 cut(s) | 381 |
| HpyCH4V | TGCA | 3 cut(s) | 586, 781, 818 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 13, 55, 60, 291, 422, 679, 849 |
| HpyF3I | CTNAG | 7 cut(s) | 129, 243, 324, 577, 669, 723, 736 |
| HpySE526I | ACGT | 1 cut(s) | 381 |
| Hsp92I | GRCGYC | 2 cut(s) | 224, 785 |
| Hsp92II | CATG | 5 cut(s) | 209, 456, 479, 502, 859 |
| HspAI | GCGC | 3 cut(s) | 174, 843, 950 |
| Kzo9I | GATC | 4 cut(s) | 514, 546, 757, 910 |
| LmnI | GCTCC | 4 cut(s) | 63, 349, 490, 697 |
| Lsp1109I | GCAGC | 5 cut(s) | 262, 403, 598, 842, 928 |
| LweI | GCATC | 5 cut(s) | 3, 403, 412, 665, 760 |
| MaeI | CTAG | 3 cut(s) | 36, 89, 254 |
| MaeII | ACGT | 1 cut(s) | 381 |
| MaeIII | GTNAC | 1 cut(s) | 859 |
| MalI | GATC | 4 cut(s) | 516, 548, 759, 912 |
| MbiI | CCGCTC | 2 cut(s) | 133, 160 |
| MboI | GATC | 4 cut(s) | 514, 546, 757, 910 |
| MboII | GAAGA | 3 cut(s) | 629, 634, 947 |
| MflI | RGATCY | 1 cut(s) | 546 |
| MhlI | GDGCHC | 2 cut(s) | 33, 287 |
| MluCI | AATT | 4 cut(s) | 113, 540, 806, 820 |
| MlyI | GAGTC | 1 cut(s) | 86 |
| MmeI | TCCRAC | 1 cut(s) | 573 |
| MseI | TTAA | 1 cut(s) | 296 |
| MslI | CAYNNNNRTG | 2 cut(s) | 153, 857 |
| MspA1I | CMGCKG | 4 cut(s) | 487, 556, 589, 767 |
| MspI | CCGG | 3 cut(s) | 307, 774, 923 |
| MspR9I | CCNGG | 3 cut(s) | 218, 307, 905 |
| MvaI | CCWGG | 2 cut(s) | 218, 905 |
| MvnI | CGCG | 4 cut(s) | 429, 698, 845, 950 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 13, 55, 60, 291, 422, 679, 849 |
| NciI | CCSGG | 1 cut(s) | 307 |
| NcoI | CCATGG | 1 cut(s) | 855 |
| NdeII | GATC | 4 cut(s) | 514, 546, 757, 910 |
| NheI | GCTAGC | 1 cut(s) | 35 |
| NlaIII | CATG | 5 cut(s) | 209, 456, 479, 502, 859 |
| NlaIV | GGNNCC | 8 cut(s) | 30, 31, 59, 392, 458, 629, 711, 853 |
| NmeAIII | GCCGAG | 1 cut(s) | 157 |
| NmuCI | GTSAC | 1 cut(s) | 859 |
| OliI | CACNNNNGTG | 2 cut(s) | 153, 857 |
| PfeI | GAWTC | 1 cut(s) | 560 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 453 |
| PleI | GAGTC | 1 cut(s) | 86 |
| PpsI | GAGTC | 1 cut(s) | 86 |
| PpuMI | RGGWCCY | 1 cut(s) | 457 |
| Psp5II | RGGWCCY | 1 cut(s) | 457 |
| Psp6I | CCWGG | 2 cut(s) | 216, 903 |
| PspFI | CCCAGC | 4 cut(s) | 163, 352, 483, 763 |
| PspGI | CCWGG | 2 cut(s) | 216, 903 |
| PspN4I | GGNNCC | 8 cut(s) | 30, 31, 59, 392, 458, 629, 711, 853 |
| PspOMI | GGGCCC | 1 cut(s) | 29 |
| PspPI | GGNCC | 7 cut(s) | 29, 30, 202, 269, 304, 314, 457 |
| PspPPI | RGGWCCY | 1 cut(s) | 457 |
| PsuI | RGATCY | 1 cut(s) | 546 |
| PvuII | CAGCTG | 1 cut(s) | 487 |
| RsaI | GTAC | 2 cut(s) | 107, 410 |
| RsaNI | GTAC | 2 cut(s) | 106, 409 |
| RseI | CAYNNNNRTG | 2 cut(s) | 153, 857 |
| SaqAI | TTAA | 1 cut(s) | 296 |
| Sau3AI | GATC | 4 cut(s) | 514, 546, 757, 910 |
| Sau96I | GGNCC | 7 cut(s) | 29, 30, 202, 269, 304, 314, 457 |
| SchI | GAGTC | 1 cut(s) | 86 |
| ScrFI | CCNGG | 3 cut(s) | 218, 307, 905 |
| SduI | GDGCHC | 2 cut(s) | 33, 287 |
| SfaNI | GCATC | 5 cut(s) | 3, 403, 412, 665, 760 |
| SgrAI | CRCCGGYG | 1 cut(s) | 922 |
| SinI | GGWCC | 1 cut(s) | 457 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 153, 857 |
| SmlI | CTYRAG | 2 cut(s) | 461, 717 |
| SmoI | CTYRAG | 2 cut(s) | 461, 717 |
| Sse9I | AATT | 4 cut(s) | 113, 540, 806, 820 |
| SspMI | CTAG | 3 cut(s) | 36, 89, 254 |
| StyD4I | CCNGG | 3 cut(s) | 216, 305, 903 |
| StyI | CCWWGG | 1 cut(s) | 855 |
| TaaI | ACNGT | 1 cut(s) | 632 |
| TaiI | ACGT | 1 cut(s) | 384 |
| TaqI | TCGA | 2 cut(s) | 227, 909 |
| TasI | AATT | 4 cut(s) | 113, 540, 806, 820 |
| TatI | WGTACW | 1 cut(s) | 105 |
| TauI | GCSGC | 8 cut(s) | 163, 224, 250, 305, 432, 527, 644, 922 |
| TfiI | GAWTC | 1 cut(s) | 560 |
| Tru1I | TTAA | 1 cut(s) | 296 |
| Tru9I | TTAA | 1 cut(s) | 296 |
| TscAI | CASTG | 1 cut(s) | 15 |
| TseFI | GTSAC | 1 cut(s) | 859 |
| TseI | GCWGC | 6 cut(s) | 4, 250, 416, 586, 830, 916 |
| Tsp45I | GTSAC | 1 cut(s) | 859 |
| TspGWI | ACGGA | 1 cut(s) | 91 |
| TspRI | CASTG | 1 cut(s) | 15 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 453 |
| VpaK11BI | GGWCC | 1 cut(s) | 457 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 398 |
| XapI | RAATTY | 2 cut(s) | 806, 820 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 370 |
| XmiI | GTMKAC | 1 cut(s) | 665 |
| XspI | CTAG | 3 cut(s) | 36, 89, 254 |