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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 12 |
| Acc36I | ACCTGC | 1 cut(s) | 514 |
| Acc65I | GGTACC | 2 cut(s) | 599, 2126 |
| AccB1I | GGYRCC | 9 cut(s) | 248, 599, 668, 1880, 1916, 1967, 1985, 2009, 2126 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 159, 1926 |
| AccBSI | CCGCTC | 2 cut(s) | 1483, 1624 |
| AccI | GTMKAC | 2 cut(s) | 495, 1382 |
| AccII | CGCG | 7 cut(s) | 62, 649, 664, 779, 1123, 1200, 1803 |
| AclWI | GGATC | 2 cut(s) | 1692, 2167 |
| AcoI | YGGCCR | 7 cut(s) | 3, 1011, 1260, 1608, 1692, 1809, 1887 |
| AcuI | CTGAAG | 4 cut(s) | 66, 323, 1390, 1706 |
| AcyI | GRCGYC | 5 cut(s) | 9, 1460, 1593, 1917, 1937 |
| AdeI | CACNNNGTG | 1 cut(s) | 1022 |
| AfaI | GTAC | 6 cut(s) | 601, 636, 827, 1120, 1847, 2128 |
| AflIII | ACRYGT | 1 cut(s) | 1668 |
| AgsI | TTSAA | 3 cut(s) | 740, 1133, 1715 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 2142 |
| AjnI | CCWGG | 7 cut(s) | 414, 813, 957, 1452, 1533, 1629, 1884 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1308, 1340 |
| AluBI | AGCT | 3 cut(s) | 337, 1273, 1489 |
| AluI | AGCT | 3 cut(s) | 337, 1273, 1489 |
| Alw21I | GWGCWC | 1 cut(s) | 1491 |
| Alw26I | GTCTC | 1 cut(s) | 2129 |
| AlwI | GGATC | 2 cut(s) | 1692, 2167 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 682 |
| Ama87I | CYCGRG | 4 cut(s) | 1096, 1229, 2017, 2115 |
| ApaI | GGGCCC | 1 cut(s) | 1198 |
| ApeKI | GCWGC | 9 cut(s) | 337, 475, 682, 946, 962, 1438, 1678, 1805, 1906 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1129, 1161 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1719 |
| Asp718I | GGTACC | 2 cut(s) | 599, 2126 |
| AspLEI | GCGC | 5 cut(s) | 62, 553, 880, 1805, 1919 |
| AsuC2I | CCSGG | 8 cut(s) | 40, 324, 750, 866, 1163, 2095, 2116, 2117 |
| AsuHPI | GGTGA | 5 cut(s) | 343, 950, 1325, 1325, 1781 |
| AvaI | CYCGRG | 4 cut(s) | 1096, 1229, 2017, 2115 |
| AvaII | GGWCC | 4 cut(s) | 176, 455, 862, 1627 |
| BaeGI | GKGCMC | 5 cut(s) | 1049, 1198, 1425, 1885, 1972 |
| BalI | TGGCCA | 1 cut(s) | 1889 |
| BanI | GGYRCC | 9 cut(s) | 248, 599, 668, 1880, 1916, 1967, 1985, 2009, 2126 |
| BanII | GRGCYC | 3 cut(s) | 1097, 1198, 1491 |
| BauI | CACGAG | 1 cut(s) | 1264 |
| BbsI | GAAGAC | 2 cut(s) | 708, 857 |
| Bbv12I | GWGCWC | 1 cut(s) | 1491 |
| BbvCI | CCTCAGC | 1 cut(s) | 1791 |
| BbvI | GCAGC | 9 cut(s) | 324, 462, 669, 933, 949, 1425, 1665, 1792, 1918 |
| BccI | CCATC | 7 cut(s) | 254, 263, 681, 935, 936, 2000, 2117 |
| BceAI | ACGGC | 8 cut(s) | 262, 377, 750, 971, 1034, 1091, 1373, 1595 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 238, 272, 1220, 1254 |
| BciT130I | CCWGG | 7 cut(s) | 416, 815, 959, 1454, 1535, 1631, 1886 |
| BciVI | GTATCC | 2 cut(s) | 211, 1168 |
| BcnI | CCSGG | 8 cut(s) | 40, 324, 750, 866, 1163, 2095, 2116, 2117 |
| BcoDI | GTCTC | 1 cut(s) | 2129 |
| BfaI | CTAG | 1 cut(s) | 131 |
| BfmI | CTRYAG | 2 cut(s) | 146, 1511 |
| BfoI | RGCGCY | 3 cut(s) | 554, 881, 1920 |
| BfuAI | ACCTGC | 1 cut(s) | 514 |
| BfuI | GTATCC | 2 cut(s) | 211, 1168 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 1745, 1976 |
| BlpI | GCTNAGC | 1 cut(s) | 1224 |
| Bme18I | GGWCC | 4 cut(s) | 176, 455, 862, 1627 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 2142 |
| BmeT110I | CYCGRG | 4 cut(s) | 1096, 1229, 2017, 2115 |
| BmrI | ACTGGG | 4 cut(s) | 1200, 1936, 2068, 2136 |
| BmsI | GCATC | 2 cut(s) | 760, 1573 |
| BmuI | ACTGGG | 4 cut(s) | 1200, 1936, 2068, 2136 |
| BoxI | GACNNNNGTC | 1 cut(s) | 712 |
| BpiI | GAAGAC | 2 cut(s) | 708, 857 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1262, 1294 |
| BpmI | CTGGAG | 5 cut(s) | 1097, 1134, 1141, 1652, 1784 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1490, 1791 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1224 |
| BpuEI | CTTGAG | 1 cut(s) | 592 |
| BpuMI | CCSGG | 8 cut(s) | 40, 324, 750, 866, 1163, 2095, 2116, 2117 |
| Bsa29I | ATCGAT | 1 cut(s) | 258 |
| BsaAI | YACGTR | 1 cut(s) | 499 |
| BsaHI | GRCGYC | 5 cut(s) | 9, 1460, 1593, 1917, 1937 |
| BsaI | GGTCTC | 1 cut(s) | 2129 |
| BsaWI | WCCGGW | 1 cut(s) | 315 |
| Bse118I | RCCGGY | 6 cut(s) | 297, 1009, 1877, 1945, 1975, 1988 |
| Bse1I | ACTGG | 8 cut(s) | 495, 596, 899, 973, 1195, 1931, 2074, 2142 |
| BseBI | CCWGG | 7 cut(s) | 416, 815, 959, 1454, 1535, 1631, 1886 |
| BseCI | ATCGAT | 1 cut(s) | 258 |
| BseGI | GGATG | 3 cut(s) | 282, 315, 2056 |
| BseNI | ACTGG | 8 cut(s) | 495, 596, 899, 973, 1195, 1931, 2074, 2142 |
| BseRI | GAGGAG | 2 cut(s) | 371, 1511 |
| BseSI | GKGCMC | 5 cut(s) | 1049, 1198, 1425, 1885, 1972 |
| BseX3I | CGGCCG | 1 cut(s) | 1809 |
| BseXI | GCAGC | 9 cut(s) | 324, 462, 669, 933, 949, 1425, 1665, 1792, 1918 |
| BseYI | CCCAGC | 6 cut(s) | 187, 433, 727, 1048, 1348, 2058 |
| BsgI | GTGCAG | 2 cut(s) | 461, 1049 |
| Bsh1236I | CGCG | 7 cut(s) | 62, 649, 664, 779, 1123, 1200, 1803 |
| Bsh1285I | CGRYCG | 3 cut(s) | 1386, 1812, 1950 |
| BshNI | GGYRCC | 9 cut(s) | 248, 599, 668, 1880, 1916, 1967, 1985, 2009, 2126 |
| BshVI | ATCGAT | 1 cut(s) | 258 |
| BsiEI | CGRYCG | 3 cut(s) | 1386, 1812, 1950 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1491 |
| BsiHKCI | CYCGRG | 4 cut(s) | 1096, 1229, 2017, 2115 |
| BslFI | GGGAC | 5 cut(s) | 176, 468, 1640, 1657, 2071 |
| BsmAI | GTCTC | 1 cut(s) | 2129 |
| BsmFI | GGGAC | 5 cut(s) | 176, 468, 1640, 1657, 2071 |
| Bso31I | GGTCTC | 1 cut(s) | 2129 |
| BsoBI | CYCGRG | 4 cut(s) | 1096, 1229, 2017, 2115 |
| Bsp120I | GGGCCC | 1 cut(s) | 1194 |
| Bsp1286I | GDGCHC | 7 cut(s) | 1049, 1097, 1198, 1425, 1491, 1885, 1972 |
| Bsp143I | GATC | 4 cut(s) | 561, 1684, 2159, 2169 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1224 |
| Bsp19I | CCATGG | 1 cut(s) | 786 |
| Bsp68I | TCGCGA | 2 cut(s) | 649, 779 |
| BspDI | ATCGAT | 1 cut(s) | 258 |
| BspFNI | CGCG | 7 cut(s) | 62, 649, 664, 779, 1123, 1200, 1803 |
| BspMI | ACCTGC | 1 cut(s) | 514 |
| BspPI | GGATC | 2 cut(s) | 1692, 2167 |
| BspT107I | GGYRCC | 9 cut(s) | 248, 599, 668, 1880, 1916, 1967, 1985, 2009, 2126 |
| BspTNI | GGTCTC | 1 cut(s) | 2129 |
| BsrBI | CCGCTC | 2 cut(s) | 1483, 1624 |
| BsrFI | RCCGGY | 6 cut(s) | 297, 1009, 1877, 1945, 1975, 1988 |
| BsrI | ACTGG | 8 cut(s) | 495, 596, 899, 973, 1195, 1931, 2074, 2142 |
| BssAI | RCCGGY | 6 cut(s) | 297, 1009, 1877, 1945, 1975, 1988 |
| BssMI | GATC | 4 cut(s) | 561, 1684, 2159, 2169 |
| BssNAI | GTATAC | 1 cut(s) | 496 |
| BssNI | GRCGYC | 5 cut(s) | 9, 1460, 1593, 1917, 1937 |
| BssSI | CACGAG | 1 cut(s) | 1264 |
| BssT1I | CCWWGG | 5 cut(s) | 508, 544, 786, 1698, 1962 |
| Bst1107I | GTATAC | 1 cut(s) | 496 |
| Bst2BI | CACGAG | 1 cut(s) | 1264 |
| Bst2UI | CCWGG | 7 cut(s) | 416, 815, 959, 1454, 1535, 1631, 1886 |
| Bst6I | CTCTTC | 1 cut(s) | 649 |
| BstACI | GRCGYC | 5 cut(s) | 9, 1460, 1593, 1917, 1937 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1985 |
| BstBAI | YACGTR | 1 cut(s) | 499 |
| BstDSI | CCRYGG | 3 cut(s) | 158, 786, 1597 |
| BstF5I | GGATG | 3 cut(s) | 282, 315, 2056 |
| BstFNI | CGCG | 7 cut(s) | 62, 649, 664, 779, 1123, 1200, 1803 |
| BstH2I | RGCGCY | 3 cut(s) | 554, 881, 1920 |
| BstHHI | GCGC | 5 cut(s) | 62, 553, 880, 1805, 1919 |
| BstKTI | GATC | 4 cut(s) | 564, 1687, 2162, 2172 |
| BstMAI | GTCTC | 1 cut(s) | 2129 |
| BstMBI | GATC | 4 cut(s) | 561, 1684, 2159, 2169 |
| BstMCI | CGRYCG | 3 cut(s) | 1386, 1812, 1950 |
| BstNI | CCWGG | 7 cut(s) | 416, 815, 959, 1454, 1535, 1631, 1886 |
| BstNSI | RCATGY | 1 cut(s) | 1672 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 712 |
| BstSFI | CTRYAG | 2 cut(s) | 146, 1511 |
| BstSLI | GKGCMC | 5 cut(s) | 1049, 1198, 1425, 1885, 1972 |
| BstUI | CGCG | 7 cut(s) | 62, 649, 664, 779, 1123, 1200, 1803 |
| BstV1I | GCAGC | 9 cut(s) | 324, 462, 669, 933, 949, 1425, 1665, 1792, 1918 |
| BstV2I | GAAGAC | 2 cut(s) | 708, 857 |
| BstX2I | RGATCY | 1 cut(s) | 2159 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 935 |
| BstYI | RGATCY | 1 cut(s) | 2159 |
| BstZ17I | GTATAC | 1 cut(s) | 496 |
| BstZI | CGGCCG | 1 cut(s) | 1809 |
| Bsu15I | ATCGAT | 1 cut(s) | 258 |
| BsuI | GTATCC | 2 cut(s) | 211, 1168 |
| BsuTUI | ATCGAT | 1 cut(s) | 258 |
| BtgI | CCRYGG | 3 cut(s) | 158, 786, 1597 |
| BtsCI | GGATG | 3 cut(s) | 282, 315, 2056 |
| BtsI | GCAGTG | 2 cut(s) | 34, 116 |
| BtsIMutI | CAGTG | 4 cut(s) | 34, 116, 906, 1856 |
| BtuMI | TCGCGA | 2 cut(s) | 649, 779 |
| BveI | ACCTGC | 1 cut(s) | 514 |
| CaiI | CAGNNNCTG | 1 cut(s) | 682 |
| CciNI | GCGGCCGC | 1 cut(s) | 1809 |
| CfoI | GCGC | 5 cut(s) | 62, 553, 880, 1805, 1919 |
| Cfr10I | RCCGGY | 6 cut(s) | 297, 1009, 1877, 1945, 1975, 1988 |
| Cfr9I | CCCGGG | 1 cut(s) | 2115 |
| ClaI | ATCGAT | 1 cut(s) | 258 |
| CseI | GACGC | 6 cut(s) | 80, 329, 1449, 1569, 1601, 1926 |
| Csp6I | GTAC | 6 cut(s) | 600, 635, 826, 1119, 1846, 2127 |
| CviQI | GTAC | 6 cut(s) | 600, 635, 826, 1119, 1846, 2127 |
| DinI | GGCGCC | 1 cut(s) | 1918 |
| DpnI | GATC | 4 cut(s) | 563, 1686, 2161, 2171 |
| DpnII | GATC | 4 cut(s) | 561, 1684, 2159, 2169 |
| DraIII | CACNNNGTG | 1 cut(s) | 1022 |
| DriI | GACNNNNNGTC | 1 cut(s) | 2142 |
| EaeI | YGGCCR | 7 cut(s) | 3, 1011, 1260, 1608, 1692, 1809, 1887 |
| EagI | CGGCCG | 1 cut(s) | 1809 |
| Eam1104I | CTCTTC | 1 cut(s) | 649 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 2142 |
| EarI | CTCTTC | 1 cut(s) | 649 |
| EciI | GGCGGA | 6 cut(s) | 80, 401, 482, 704, 735, 2063 |
| Ecl136II | GAGCTC | 1 cut(s) | 1489 |
| EclXI | CGGCCG | 1 cut(s) | 1809 |
| Eco130I | CCWWGG | 5 cut(s) | 508, 544, 786, 1698, 1962 |
| Eco147I | AGGCCT | 2 cut(s) | 365, 1102 |
| Eco24I | GRGCYC | 3 cut(s) | 1097, 1198, 1491 |
| Eco31I | GGTCTC | 1 cut(s) | 2129 |
| Eco47I | GGWCC | 4 cut(s) | 176, 455, 862, 1627 |
| Eco52I | CGGCCG | 1 cut(s) | 1809 |
| Eco53kI | GAGCTC | 1 cut(s) | 1489 |
| Eco57I | CTGAAG | 4 cut(s) | 66, 323, 1390, 1706 |
| Eco88I | CYCGRG | 4 cut(s) | 1096, 1229, 2017, 2115 |
| EcoICRI | GAGCTC | 1 cut(s) | 1489 |
| EcoO109I | RGGNCCY | 3 cut(s) | 1194, 1507, 1627 |
| EcoRII | CCWGG | 7 cut(s) | 414, 813, 957, 1452, 1533, 1629, 1884 |
| EcoT14I | CCWWGG | 5 cut(s) | 508, 544, 786, 1698, 1962 |
| EcoT38I | GRGCYC | 3 cut(s) | 1097, 1198, 1491 |
| EgeI | GGCGCC | 1 cut(s) | 1918 |
| EheI | GGCGCC | 1 cut(s) | 1918 |
| ErhI | CCWWGG | 5 cut(s) | 508, 544, 786, 1698, 1962 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 2023, 2055 |
| FaqI | GGGAC | 5 cut(s) | 176, 468, 1640, 1657, 2071 |
| FblI | GTMKAC | 2 cut(s) | 495, 1382 |
| FokI | GGATG | 3 cut(s) | 289, 322, 2063 |
| FriOI | GRGCYC | 3 cut(s) | 1097, 1198, 1491 |
| FspBI | CTAG | 1 cut(s) | 131 |
| GlaI | GCGC | 5 cut(s) | 61, 552, 879, 1804, 1918 |
| GsaI | CCCAGC | 6 cut(s) | 191, 437, 731, 1052, 1352, 2062 |
| GsuI | CTGGAG | 5 cut(s) | 1097, 1134, 1141, 1652, 1784 |
| HaeII | RGCGCY | 3 cut(s) | 554, 881, 1920 |
| HgaI | GACGC | 6 cut(s) | 80, 329, 1449, 1569, 1601, 1926 |
| HhaI | GCGC | 5 cut(s) | 62, 553, 880, 1805, 1919 |
| Hin1I | GRCGYC | 5 cut(s) | 9, 1460, 1593, 1917, 1937 |
| Hin6I | GCGC | 5 cut(s) | 60, 551, 878, 1803, 1917 |
| HinP1I | GCGC | 5 cut(s) | 60, 551, 878, 1803, 1917 |
| HincII | GTYRAC | 3 cut(s) | 295, 1383, 1393 |
| HindII | GTYRAC | 3 cut(s) | 295, 1383, 1393 |
| HpaI | GTTAAC | 1 cut(s) | 1393 |
| HphI | GGTGA | 5 cut(s) | 343, 950, 1325, 1325, 1781 |
| Hpy166II | GTNNAC | 7 cut(s) | 295, 496, 529, 862, 1316, 1383, 1393 |
| Hpy188I | TCNGA | 8 cut(s) | 46, 180, 348, 678, 849, 892, 2080, 2164 |
| Hpy188III | TCNNGA | 3 cut(s) | 565, 648, 778 |
| Hpy8I | GTNNAC | 7 cut(s) | 295, 496, 529, 862, 1316, 1383, 1393 |
| Hpy99I | CGWCG | 6 cut(s) | 11, 352, 1090, 1112, 1433, 1563 |
| HpyCH4IV | ACGT | 3 cut(s) | 9, 165, 498 |
| HpyCH4V | TGCA | 8 cut(s) | 107, 397, 478, 516, 632, 1030, 1441, 1906 |
| HpySE526I | ACGT | 3 cut(s) | 9, 165, 498 |
| Hsp92I | GRCGYC | 5 cut(s) | 9, 1460, 1593, 1917, 1937 |
| HspAI | GCGC | 5 cut(s) | 60, 551, 878, 1803, 1917 |
| KasI | GGCGCC | 1 cut(s) | 1916 |
| KpnI | GGTACC | 2 cut(s) | 603, 2130 |
| KroI | GCCGGC | 3 cut(s) | 1009, 1975, 1988 |
| KroNI | GCCGGC | 3 cut(s) | 1011, 1977, 1990 |
| KspAI | GTTAAC | 1 cut(s) | 1393 |
| Kzo9I | GATC | 4 cut(s) | 561, 1684, 2159, 2169 |
| LmnI | GCTCC | 7 cut(s) | 548, 1006, 1078, 1240, 1486, 1660, 1797 |
| Lsp1109I | GCAGC | 9 cut(s) | 324, 462, 669, 933, 949, 1425, 1665, 1792, 1918 |
| LweI | GCATC | 2 cut(s) | 760, 1573 |
| MaeI | CTAG | 1 cut(s) | 131 |
| MaeII | ACGT | 3 cut(s) | 9, 165, 498 |
| MaeIII | GTNAC | 3 cut(s) | 286, 421, 1060 |
| MalI | GATC | 4 cut(s) | 563, 1686, 2161, 2171 |
| MbiI | CCGCTC | 2 cut(s) | 1483, 1624 |
| MboI | GATC | 4 cut(s) | 561, 1684, 2159, 2169 |
| MboII | GAAGA | 7 cut(s) | 663, 666, 708, 862, 1045, 1219, 1648 |
| MflI | RGATCY | 1 cut(s) | 2159 |
| MhlI | GDGCHC | 7 cut(s) | 1049, 1097, 1198, 1425, 1491, 1885, 1972 |
| MlsI | TGGCCA | 1 cut(s) | 1889 |
| MluCI | AATT | 3 cut(s) | 801, 808, 1604 |
| MluNI | TGGCCA | 1 cut(s) | 1889 |
| Mly113I | GGCGCC | 1 cut(s) | 1917 |
| MmeI | TCCRAC | 2 cut(s) | 371, 1638 |
| Mox20I | TGGCCA | 1 cut(s) | 1889 |
| MroNI | GCCGGC | 3 cut(s) | 1009, 1975, 1988 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1719 |
| MscI | TGGCCA | 1 cut(s) | 1889 |
| MseI | TTAA | 2 cut(s) | 1392, 1755 |
| MslI | CAYNNNNRTG | 2 cut(s) | 483, 933 |
| Msp20I | TGGCCA | 1 cut(s) | 1889 |
| MspA1I | CMGCKG | 8 cut(s) | 187, 380, 433, 1052, 1726, 1817, 2062, 2157 |
| MvaI | CCWGG | 7 cut(s) | 416, 815, 959, 1454, 1535, 1631, 1886 |
| MvnI | CGCG | 7 cut(s) | 62, 649, 664, 779, 1123, 1200, 1803 |
| NaeI | GCCGGC | 3 cut(s) | 1011, 1977, 1990 |
| NarI | GGCGCC | 1 cut(s) | 1917 |
| NciI | CCSGG | 8 cut(s) | 40, 324, 750, 866, 1163, 2095, 2116, 2117 |
| NcoI | CCATGG | 1 cut(s) | 786 |
| NdeII | GATC | 4 cut(s) | 561, 1684, 2159, 2169 |
| NgoMIV | GCCGGC | 3 cut(s) | 1009, 1975, 1988 |
| NmeAIII | GCCGAG | 1 cut(s) | 1321 |
| NmuCI | GTSAC | 1 cut(s) | 421 |
| NotI | GCGGCCGC | 1 cut(s) | 1809 |
| NruI | TCGCGA | 2 cut(s) | 649, 779 |
| NspI | RCATGY | 1 cut(s) | 1672 |
| PaeR7I | CTCGAG | 1 cut(s) | 1096 |
| PceI | AGGCCT | 2 cut(s) | 365, 1102 |
| PciI | ACATGT | 1 cut(s) | 1668 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 92, 1094 |
| PdiI | GCCGGC | 3 cut(s) | 1011, 1977, 1990 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1719 |
| PfeI | GAWTC | 5 cut(s) | 35, 181, 578, 692, 818 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 159, 1926 |
| PfoI | TCCNGGA | 1 cut(s) | 813 |
| PluTI | GGCGCC | 1 cut(s) | 1920 |
| Ppu21I | YACGTR | 1 cut(s) | 499 |
| PpuMI | RGGWCCY | 1 cut(s) | 1627 |
| PscI | ACATGT | 1 cut(s) | 1668 |
| PshAI | GACNNNNGTC | 1 cut(s) | 712 |
| Psp124BI | GAGCTC | 1 cut(s) | 1491 |
| Psp5II | RGGWCCY | 1 cut(s) | 1627 |
| Psp6I | CCWGG | 7 cut(s) | 414, 813, 957, 1452, 1533, 1629, 1884 |
| PspFI | CCCAGC | 6 cut(s) | 187, 433, 727, 1048, 1348, 2058 |
| PspGI | CCWGG | 7 cut(s) | 414, 813, 957, 1452, 1533, 1629, 1884 |
| PspOMI | GGGCCC | 1 cut(s) | 1194 |
| PspPPI | RGGWCCY | 1 cut(s) | 1627 |
| PspXI | VCTCGAGB | 1 cut(s) | 1096 |
| PstNI | CAGNNNCTG | 1 cut(s) | 682 |
| PsuI | RGATCY | 1 cut(s) | 2159 |
| RruI | TCGCGA | 2 cut(s) | 649, 779 |
| RsaI | GTAC | 6 cut(s) | 601, 636, 827, 1120, 1847, 2128 |
| RsaNI | GTAC | 6 cut(s) | 600, 635, 826, 1119, 1846, 2127 |
| RseI | CAYNNNNRTG | 2 cut(s) | 483, 933 |
| SacI | GAGCTC | 1 cut(s) | 1491 |
| SalI | GTCGAC | 1 cut(s) | 1381 |
| SaqAI | TTAA | 2 cut(s) | 1392, 1755 |
| Sau3AI | GATC | 4 cut(s) | 561, 1684, 2159, 2169 |
| SduI | GDGCHC | 7 cut(s) | 1049, 1097, 1198, 1425, 1491, 1885, 1972 |
| SfaNI | GCATC | 2 cut(s) | 760, 1573 |
| SfcI | CTRYAG | 2 cut(s) | 146, 1511 |
| SfoI | GGCGCC | 1 cut(s) | 1918 |
| Sfr274I | CTCGAG | 1 cut(s) | 1096 |
| SinI | GGWCC | 4 cut(s) | 176, 455, 862, 1627 |
| SlaI | CTCGAG | 1 cut(s) | 1096 |
| SmaI | CCCGGG | 1 cut(s) | 2117 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 483, 933 |
| SmlI | CTYRAG | 2 cut(s) | 571, 1096 |
| SmoI | CTYRAG | 2 cut(s) | 571, 1096 |
| Sse9I | AATT | 3 cut(s) | 801, 808, 1604 |
| SseBI | AGGCCT | 2 cut(s) | 365, 1102 |
| SspDI | GGCGCC | 1 cut(s) | 1916 |
| SspMI | CTAG | 1 cut(s) | 131 |
| SstI | GAGCTC | 1 cut(s) | 1491 |
| StuI | AGGCCT | 2 cut(s) | 365, 1102 |
| StyI | CCWWGG | 5 cut(s) | 508, 544, 786, 1698, 1962 |
| TaiI | ACGT | 3 cut(s) | 12, 168, 501 |
| TaqI | TCGA | 7 cut(s) | 23, 138, 258, 564, 1097, 1382, 1554 |
| TaqII | GACCGA | 2 cut(s) | 472, 1877 |
| TasI | AATT | 3 cut(s) | 801, 808, 1604 |
| TatI | WGTACW | 2 cut(s) | 634, 1845 |
| TfiI | GAWTC | 5 cut(s) | 35, 181, 578, 692, 818 |
| Tru1I | TTAA | 2 cut(s) | 1392, 1755 |
| Tru9I | TTAA | 2 cut(s) | 1392, 1755 |
| TscAI | CASTG | 4 cut(s) | 34, 123, 906, 1863 |
| TseFI | GTSAC | 1 cut(s) | 421 |
| TseI | GCWGC | 9 cut(s) | 337, 475, 682, 946, 962, 1438, 1678, 1805, 1906 |
| Tsp45I | GTSAC | 1 cut(s) | 421 |
| TspDTI | ATGAA | 2 cut(s) | 501, 1656 |
| TspGWI | ACGGA | 1 cut(s) | 84 |
| TspMI | CCCGGG | 1 cut(s) | 2115 |
| TspRI | CASTG | 4 cut(s) | 34, 123, 906, 1863 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 159, 1926 |
| VpaK11BI | GGWCC | 4 cut(s) | 176, 455, 862, 1627 |
| XceI | RCATGY | 1 cut(s) | 1672 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 965, 1072, 1270 |
| XhoI | CTCGAG | 1 cut(s) | 1096 |
| XmaI | CCCGGG | 1 cut(s) | 2115 |
| XmiI | GTMKAC | 2 cut(s) | 495, 1382 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1719 |
| XspI | CTAG | 1 cut(s) | 131 |
| ZraI | GACGTC | 1 cut(s) | 10 |