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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 2 cut(s) | 333, 504 |
| Acc36I | ACCTGC | 2 cut(s) | 333, 504 |
| AccB1I | GGYRCC | 3 cut(s) | 190, 792, 989 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1067 |
| AccBSI | CCGCTC | 3 cut(s) | 233, 715, 790 |
| AccII | CGCG | 6 cut(s) | 256, 258, 273, 604, 981, 983 |
| AclWI | GGATC | 4 cut(s) | 212, 290, 639, 841 |
| AcoI | YGGCCR | 2 cut(s) | 570, 605 |
| AcyI | GRCGYC | 4 cut(s) | 22, 191, 366, 1001 |
| AfaI | GTAC | 3 cut(s) | 60, 87, 422 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 155, 159, 579, 586, 705, 802, 839, 1067 |
| AgsI | TTSAA | 2 cut(s) | 221, 903 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 118 |
| AjnI | CCWGG | 2 cut(s) | 684, 1018 |
| AleI | CACNNNNGTG | 1 cut(s) | 995 |
| AluBI | AGCT | 6 cut(s) | 507, 599, 679, 721, 775, 815 |
| AluI | AGCT | 6 cut(s) | 507, 599, 679, 721, 775, 815 |
| Alw26I | GTCTC | 4 cut(s) | 126, 554, 746, 952 |
| AlwI | GGATC | 4 cut(s) | 212, 290, 639, 841 |
| Ama87I | CYCGRG | 4 cut(s) | 154, 705, 743, 874 |
| AoxI | GGCC | 8 cut(s) | 41, 235, 438, 546, 570, 588, 605, 762 |
| ApeKI | GCWGC | 7 cut(s) | 425, 500, 599, 718, 806, 1082, 1085 |
| AspLEI | GCGC | 8 cut(s) | 7, 93, 193, 258, 488, 604, 956, 983 |
| AspS9I | GGNCC | 5 cut(s) | 41, 135, 235, 385, 439 |
| AsuHPI | GGTGA | 4 cut(s) | 314, 622, 1009, 1082 |
| AvaI | CYCGRG | 4 cut(s) | 154, 705, 743, 874 |
| AvaII | GGWCC | 2 cut(s) | 135, 385 |
| BanI | GGYRCC | 3 cut(s) | 190, 792, 989 |
| BanII | GRGCYC | 1 cut(s) | 1010 |
| BauI | CACGAG | 1 cut(s) | 674 |
| BbvCI | CCTCAGC | 1 cut(s) | 722 |
| BbvI | GCAGC | 7 cut(s) | 412, 487, 586, 730, 818, 1069, 1072 |
| BccI | CCATC | 8 cut(s) | 179, 205, 376, 427, 521, 793, 980, 1061 |
| BceAI | ACGGC | 2 cut(s) | 345, 585 |
| BciT130I | CCWGG | 2 cut(s) | 686, 1020 |
| BclI | TGATCA | 1 cut(s) | 1027 |
| BcoDI | GTCTC | 4 cut(s) | 126, 554, 746, 952 |
| BfaI | CTAG | 2 cut(s) | 470, 627 |
| BfoI | RGCGCY | 4 cut(s) | 8, 94, 194, 957 |
| BfuAI | ACCTGC | 2 cut(s) | 333, 504 |
| Bme1390I | CCNGG | 2 cut(s) | 686, 1020 |
| Bme18I | GGWCC | 2 cut(s) | 135, 385 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 118 |
| BmeT110I | CYCGRG | 4 cut(s) | 154, 705, 743, 874 |
| BmgT120I | GGNCC | 5 cut(s) | 41, 135, 235, 385, 439 |
| BmiI | GGNNCC | 5 cut(s) | 136, 192, 794, 828, 991 |
| BmrFI | CCNGG | 2 cut(s) | 686, 1020 |
| BmsI | GCATC | 2 cut(s) | 664, 701 |
| BpmI | CTGGAG | 2 cut(s) | 529, 797 |
| Bpu10I | CCTNAGC | 1 cut(s) | 722 |
| BsaHI | GRCGYC | 4 cut(s) | 22, 191, 366, 1001 |
| BsaI | GGTCTC | 1 cut(s) | 746 |
| BsaJI | CCNNGG | 5 cut(s) | 94, 153, 704, 993, 1019 |
| BsaWI | WCCGGW | 1 cut(s) | 579 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 404, 434, 913, 943 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 155, 159, 579, 586, 705, 802, 839, 1067 |
| Bse118I | RCCGGY | 1 cut(s) | 607 |
| Bse1I | ACTGG | 2 cut(s) | 487, 1061 |
| BseBI | CCWGG | 2 cut(s) | 686, 1020 |
| BseDI | CCNNGG | 5 cut(s) | 94, 153, 704, 993, 1019 |
| BseGI | GGATG | 6 cut(s) | 104, 438, 787, 913, 991, 1072 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 155, 159, 579, 586, 705, 802, 839, 1067 |
| BseMII | CTCAG | 2 cut(s) | 713, 852 |
| BseNI | ACTGG | 2 cut(s) | 487, 1061 |
| BseRI | GAGGAG | 3 cut(s) | 68, 548, 743 |
| BseX3I | CGGCCG | 1 cut(s) | 605 |
| BseXI | GCAGC | 7 cut(s) | 412, 487, 586, 730, 818, 1069, 1072 |
| BseYI | CCCAGC | 1 cut(s) | 428 |
| BsgI | GTGCAG | 1 cut(s) | 1071 |
| Bsh1236I | CGCG | 6 cut(s) | 256, 258, 273, 604, 981, 983 |
| Bsh1285I | CGRYCG | 1 cut(s) | 608 |
| BshFI | GGCC | 8 cut(s) | 43, 237, 440, 548, 572, 590, 607, 764 |
| BshNI | GGYRCC | 3 cut(s) | 190, 792, 989 |
| BsiEI | CGRYCG | 1 cut(s) | 608 |
| BsiHKCI | CYCGRG | 4 cut(s) | 154, 705, 743, 874 |
| BsiSI | CCGG | 3 cut(s) | 580, 608, 951 |
| BslFI | GGGAC | 1 cut(s) | 148 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 155, 159, 579, 586, 705, 802, 839, 1067 |
| BsmAI | GTCTC | 4 cut(s) | 126, 554, 746, 952 |
| BsmFI | GGGAC | 1 cut(s) | 148 |
| BsnI | GGCC | 8 cut(s) | 43, 237, 440, 548, 572, 590, 607, 764 |
| Bso31I | GGTCTC | 1 cut(s) | 746 |
| BsoBI | CYCGRG | 4 cut(s) | 154, 705, 743, 874 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1010 |
| Bsp1407I | TGTACA | 1 cut(s) | 85 |
| Bsp143I | GATC | 9 cut(s) | 204, 282, 490, 631, 732, 846, 895, 1027, 1048 |
| BspANI | GGCC | 8 cut(s) | 43, 237, 440, 548, 572, 590, 607, 764 |
| BspCNI | CTCAG | 2 cut(s) | 714, 853 |
| BspFNI | CGCG | 6 cut(s) | 256, 258, 273, 604, 981, 983 |
| BspLI | GGNNCC | 5 cut(s) | 136, 192, 794, 828, 991 |
| BspMI | ACCTGC | 2 cut(s) | 333, 504 |
| BspPI | GGATC | 4 cut(s) | 212, 290, 639, 841 |
| BspT107I | GGYRCC | 3 cut(s) | 190, 792, 989 |
| BspTNI | GGTCTC | 1 cut(s) | 746 |
| BsrBI | CCGCTC | 3 cut(s) | 233, 715, 790 |
| BsrFI | RCCGGY | 1 cut(s) | 607 |
| BsrGI | TGTACA | 1 cut(s) | 85 |
| BsrI | ACTGG | 2 cut(s) | 487, 1061 |
| BssAI | RCCGGY | 1 cut(s) | 607 |
| BssECI | CCNNGG | 5 cut(s) | 94, 153, 704, 993, 1019 |
| BssMI | GATC | 9 cut(s) | 204, 282, 490, 631, 732, 846, 895, 1027, 1048 |
| BssNI | GRCGYC | 4 cut(s) | 22, 191, 366, 1001 |
| BssSI | CACGAG | 1 cut(s) | 674 |
| BssT1I | CCWWGG | 2 cut(s) | 94, 993 |
| Bst2BI | CACGAG | 1 cut(s) | 674 |
| Bst2UI | CCWGG | 2 cut(s) | 686, 1020 |
| Bst4CI | ACNGT | 6 cut(s) | 49, 267, 389, 451, 616, 914 |
| BstACI | GRCGYC | 4 cut(s) | 22, 191, 366, 1001 |
| BstAUI | TGTACA | 1 cut(s) | 85 |
| BstC8I | GCNNGC | 5 cut(s) | 235, 239, 358, 505, 574 |
| BstDEI | CTNAG | 2 cut(s) | 722, 861 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 800 |
| BstF5I | GGATG | 6 cut(s) | 104, 438, 787, 913, 991, 1072 |
| BstFNI | CGCG | 6 cut(s) | 256, 258, 273, 604, 981, 983 |
| BstH2I | RGCGCY | 4 cut(s) | 8, 94, 194, 957 |
| BstHHI | GCGC | 8 cut(s) | 7, 93, 193, 258, 488, 604, 956, 983 |
| BstKTI | GATC | 9 cut(s) | 207, 285, 493, 634, 735, 849, 898, 1030, 1051 |
| BstMAI | GTCTC | 4 cut(s) | 126, 554, 746, 952 |
| BstMBI | GATC | 9 cut(s) | 204, 282, 490, 631, 732, 846, 895, 1027, 1048 |
| BstMCI | CGRYCG | 1 cut(s) | 608 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 13, 434, 596, 676, 695, 812, 925, 987 |
| BstNI | CCWGG | 2 cut(s) | 686, 1020 |
| BstNSI | RCATGY | 1 cut(s) | 421 |
| BstSCI | CCNGG | 2 cut(s) | 684, 1018 |
| BstUI | CGCG | 6 cut(s) | 256, 258, 273, 604, 981, 983 |
| BstV1I | GCAGC | 7 cut(s) | 412, 487, 586, 730, 818, 1069, 1072 |
| BstZI | CGGCCG | 1 cut(s) | 605 |
| BsuRI | GGCC | 8 cut(s) | 43, 237, 440, 548, 572, 590, 607, 764 |
| BtsCI | GGATG | 6 cut(s) | 104, 438, 787, 913, 991, 1072 |
| BtsI | GCAGTG | 2 cut(s) | 338, 898 |
| BtsIMutI | CAGTG | 5 cut(s) | 272, 330, 338, 898, 1068 |
| BveI | ACCTGC | 2 cut(s) | 333, 504 |
| Cac8I | GCNNGC | 5 cut(s) | 235, 239, 358, 505, 574 |
| CfoI | GCGC | 8 cut(s) | 7, 93, 193, 258, 488, 604, 956, 983 |
| Cfr10I | RCCGGY | 1 cut(s) | 607 |
| Cfr13I | GGNCC | 5 cut(s) | 41, 135, 235, 385, 439 |
| CseI | GACGC | 5 cut(s) | 11, 179, 262, 374, 1009 |
| Csp6I | GTAC | 3 cut(s) | 59, 86, 421 |
| CviAII | CATG | 1 cut(s) | 418 |
| CviQI | GTAC | 3 cut(s) | 59, 86, 421 |
| DdeI | CTNAG | 2 cut(s) | 722, 861 |
| DinI | GGCGCC | 1 cut(s) | 192 |
| DpnI | GATC | 9 cut(s) | 206, 284, 492, 633, 734, 848, 897, 1029, 1050 |
| DpnII | GATC | 9 cut(s) | 204, 282, 490, 631, 732, 846, 895, 1027, 1048 |
| DriI | GACNNNNNGTC | 1 cut(s) | 118 |
| EaeI | YGGCCR | 2 cut(s) | 570, 605 |
| EagI | CGGCCG | 1 cut(s) | 605 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 118 |
| EciI | GGCGGA | 1 cut(s) | 915 |
| EclXI | CGGCCG | 1 cut(s) | 605 |
| Eco130I | CCWWGG | 2 cut(s) | 94, 993 |
| Eco24I | GRGCYC | 1 cut(s) | 1010 |
| Eco31I | GGTCTC | 1 cut(s) | 746 |
| Eco47I | GGWCC | 2 cut(s) | 135, 385 |
| Eco52I | CGGCCG | 1 cut(s) | 605 |
| Eco88I | CYCGRG | 4 cut(s) | 154, 705, 743, 874 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 800 |
| EcoO109I | RGGNCCY | 1 cut(s) | 135 |
| EcoRII | CCWGG | 2 cut(s) | 684, 1018 |
| EcoT14I | CCWWGG | 2 cut(s) | 94, 993 |
| EcoT38I | GRGCYC | 1 cut(s) | 1010 |
| EgeI | GGCGCC | 1 cut(s) | 192 |
| EheI | GGCGCC | 1 cut(s) | 192 |
| ErhI | CCWWGG | 2 cut(s) | 94, 993 |
| FaeI | CATG | 1 cut(s) | 421 |
| FaiI | YATR | 5 cut(s) | 84, 168, 419, 555, 965 |
| FaqI | GGGAC | 1 cut(s) | 148 |
| FatI | CATG | 1 cut(s) | 417 |
| FauI | CCCGC | 4 cut(s) | 123, 226, 336, 986 |
| FbaI | TGATCA | 1 cut(s) | 1027 |
| FokI | GGATG | 6 cut(s) | 111, 445, 794, 920, 998, 1079 |
| FriOI | GRGCYC | 1 cut(s) | 1010 |
| FspBI | CTAG | 2 cut(s) | 470, 627 |
| GlaI | GCGC | 8 cut(s) | 6, 92, 192, 257, 487, 603, 955, 982 |
| GsaI | CCCAGC | 1 cut(s) | 432 |
| GsuI | CTGGAG | 2 cut(s) | 529, 797 |
| HaeII | RGCGCY | 4 cut(s) | 8, 94, 194, 957 |
| HaeIII | GGCC | 8 cut(s) | 43, 237, 440, 548, 572, 590, 607, 764 |
| HapII | CCGG | 3 cut(s) | 580, 608, 951 |
| HgaI | GACGC | 5 cut(s) | 11, 179, 262, 374, 1009 |
| HhaI | GCGC | 8 cut(s) | 7, 93, 193, 258, 488, 604, 956, 983 |
| Hin1I | GRCGYC | 4 cut(s) | 22, 191, 366, 1001 |
| Hin1II | CATG | 1 cut(s) | 421 |
| Hin6I | GCGC | 8 cut(s) | 5, 91, 191, 256, 486, 602, 954, 981 |
| HinP1I | GCGC | 8 cut(s) | 5, 91, 191, 256, 486, 602, 954, 981 |
| HinfI | GANTC | 4 cut(s) | 113, 226, 301, 922 |
| HpaII | CCGG | 3 cut(s) | 580, 608, 951 |
| HphI | GGTGA | 4 cut(s) | 314, 622, 1009, 1082 |
| Hpy166II | GTNNAC | 1 cut(s) | 639 |
| Hpy188I | TCNGA | 2 cut(s) | 150, 1027 |
| Hpy188III | TCNNGA | 4 cut(s) | 110, 208, 743, 745 |
| Hpy8I | GTNNAC | 1 cut(s) | 639 |
| Hpy99I | CGWCG | 1 cut(s) | 455 |
| HpyAV | CCTTC | 4 cut(s) | 32, 148, 329, 580 |
| HpyCH4III | ACNGT | 6 cut(s) | 49, 267, 389, 451, 616, 914 |
| HpyCH4V | TGCA | 1 cut(s) | 1088 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 13, 434, 596, 676, 695, 812, 925, 987 |
| HpyF3I | CTNAG | 2 cut(s) | 722, 861 |
| Hsp92I | GRCGYC | 4 cut(s) | 22, 191, 366, 1001 |
| Hsp92II | CATG | 1 cut(s) | 421 |
| HspAI | GCGC | 8 cut(s) | 5, 91, 191, 256, 486, 602, 954, 981 |
| KasI | GGCGCC | 1 cut(s) | 190 |
| Ksp22I | TGATCA | 1 cut(s) | 1027 |
| Kzo9I | GATC | 9 cut(s) | 204, 282, 490, 631, 732, 846, 895, 1027, 1048 |
| LmnI | GCTCC | 3 cut(s) | 176, 510, 1021 |
| Lsp1109I | GCAGC | 7 cut(s) | 412, 487, 586, 730, 818, 1069, 1072 |
| LweI | GCATC | 2 cut(s) | 664, 701 |
| MaeI | CTAG | 2 cut(s) | 470, 627 |
| MaeIII | GTNAC | 3 cut(s) | 362, 610, 997 |
| MalI | GATC | 9 cut(s) | 206, 284, 492, 633, 734, 848, 897, 1029, 1050 |
| MbiI | CCGCTC | 3 cut(s) | 233, 715, 790 |
| MboI | GATC | 9 cut(s) | 204, 282, 490, 631, 732, 846, 895, 1027, 1048 |
| MboII | GAAGA | 3 cut(s) | 551, 595, 1085 |
| MhlI | GDGCHC | 1 cut(s) | 1010 |
| MluCI | AATT | 2 cut(s) | 396, 752 |
| Mly113I | GGCGCC | 1 cut(s) | 191 |
| MlyI | GAGTC | 2 cut(s) | 107, 916 |
| MmeI | TCCRAC | 2 cut(s) | 173, 956 |
| MseI | TTAA | 1 cut(s) | 399 |
| MslI | CAYNNNNRTG | 1 cut(s) | 995 |
| MspA1I | CMGCKG | 3 cut(s) | 507, 721, 919 |
| MspI | CCGG | 3 cut(s) | 580, 608, 951 |
| MspR9I | CCNGG | 2 cut(s) | 686, 1020 |
| MvaI | CCWGG | 2 cut(s) | 686, 1020 |
| MvnI | CGCG | 6 cut(s) | 256, 258, 273, 604, 981, 983 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 13, 434, 596, 676, 695, 812, 925, 987 |
| NarI | GGCGCC | 1 cut(s) | 191 |
| NdeII | GATC | 9 cut(s) | 204, 282, 490, 631, 732, 846, 895, 1027, 1048 |
| NlaIII | CATG | 1 cut(s) | 421 |
| NlaIV | GGNNCC | 5 cut(s) | 136, 192, 794, 828, 991 |
| NmeAIII | GCCGAG | 1 cut(s) | 1029 |
| NmuCI | GTSAC | 3 cut(s) | 362, 610, 997 |
| NspI | RCATGY | 1 cut(s) | 421 |
| OliI | CACNNNNGTG | 1 cut(s) | 995 |
| PaeR7I | CTCGAG | 1 cut(s) | 743 |
| PaqCI | CACCTGC | 2 cut(s) | 333, 504 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 672 |
| PfeI | GAWTC | 2 cut(s) | 226, 301 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1067 |
| PleI | GAGTC | 2 cut(s) | 107, 916 |
| PluTI | GGCGCC | 1 cut(s) | 194 |
| PpsI | GAGTC | 2 cut(s) | 107, 916 |
| PpuMI | RGGWCCY | 1 cut(s) | 135 |
| Psp5II | RGGWCCY | 1 cut(s) | 135 |
| Psp6I | CCWGG | 2 cut(s) | 684, 1018 |
| PspFI | CCCAGC | 1 cut(s) | 428 |
| PspGI | CCWGG | 2 cut(s) | 684, 1018 |
| PspN4I | GGNNCC | 5 cut(s) | 136, 192, 794, 828, 991 |
| PspPI | GGNCC | 5 cut(s) | 41, 135, 235, 385, 439 |
| PspPPI | RGGWCCY | 1 cut(s) | 135 |
| PvuII | CAGCTG | 2 cut(s) | 507, 721 |
| RsaI | GTAC | 3 cut(s) | 60, 87, 422 |
| RsaNI | GTAC | 3 cut(s) | 59, 86, 421 |
| RseI | CAYNNNNRTG | 1 cut(s) | 995 |
| SaqAI | TTAA | 1 cut(s) | 399 |
| Sau3AI | GATC | 9 cut(s) | 204, 282, 490, 631, 732, 846, 895, 1027, 1048 |
| Sau96I | GGNCC | 5 cut(s) | 41, 135, 235, 385, 439 |
| SchI | GAGTC | 2 cut(s) | 107, 916 |
| ScrFI | CCNGG | 2 cut(s) | 686, 1020 |
| SduI | GDGCHC | 1 cut(s) | 1010 |
| SfaNI | GCATC | 2 cut(s) | 664, 701 |
| SfoI | GGCGCC | 1 cut(s) | 192 |
| Sfr274I | CTCGAG | 1 cut(s) | 743 |
| SinI | GGWCC | 2 cut(s) | 135, 385 |
| SlaI | CTCGAG | 1 cut(s) | 743 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 995 |
| SmlI | CTYRAG | 1 cut(s) | 743 |
| SmoI | CTYRAG | 1 cut(s) | 743 |
| Sse9I | AATT | 2 cut(s) | 396, 752 |
| SspDI | GGCGCC | 1 cut(s) | 190 |
| SspMI | CTAG | 2 cut(s) | 470, 627 |
| StyD4I | CCNGG | 2 cut(s) | 684, 1018 |
| StyI | CCWWGG | 2 cut(s) | 94, 993 |
| TaaI | ACNGT | 6 cut(s) | 49, 267, 389, 451, 616, 914 |
| TaqI | TCGA | 2 cut(s) | 229, 744 |
| TasI | AATT | 2 cut(s) | 396, 752 |
| TatI | WGTACW | 1 cut(s) | 85 |
| TauI | GCSGC | 7 cut(s) | 440, 476, 551, 607, 692, 718, 971 |
| TfiI | GAWTC | 2 cut(s) | 226, 301 |
| Tru1I | TTAA | 1 cut(s) | 399 |
| Tru9I | TTAA | 1 cut(s) | 399 |
| TscAI | CASTG | 5 cut(s) | 272, 337, 345, 898, 1068 |
| TseFI | GTSAC | 3 cut(s) | 362, 610, 997 |
| TseI | GCWGC | 7 cut(s) | 425, 500, 599, 718, 806, 1082, 1085 |
| Tsp45I | GTSAC | 3 cut(s) | 362, 610, 997 |
| TspDTI | ATGAA | 1 cut(s) | 236 |
| TspGWI | ACGGA | 1 cut(s) | 920 |
| TspRI | CASTG | 5 cut(s) | 272, 337, 345, 898, 1068 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1067 |
| VpaK11BI | GGWCC | 2 cut(s) | 135, 385 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 800 |
| XceI | RCATGY | 1 cut(s) | 421 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 772 |
| XhoI | CTCGAG | 1 cut(s) | 743 |
| XspI | CTAG | 2 cut(s) | 470, 627 |