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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 4 cut(s) | 179, 1019, 1329, 1643 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 159 |
| AccBSI | CCGCTC | 4 cut(s) | 1252, 1327, 1393, 1405 |
| AccII | CGCG | 7 cut(s) | 50, 697, 699, 815, 831, 887, 1368 |
| AclWI | GGATC | 3 cut(s) | 49, 451, 834 |
| AcoI | YGGCCR | 5 cut(s) | 168, 717, 871, 1148, 1464 |
| AcuI | CTGAAG | 2 cut(s) | 569, 1469 |
| AcyI | GRCGYC | 1 cut(s) | 1644 |
| AfaI | GTAC | 3 cut(s) | 337, 753, 1574 |
| AfeI | AGCGCT | 1 cut(s) | 262 |
| AflIII | ACRYGT | 1 cut(s) | 48 |
| AgsI | TTSAA | 4 cut(s) | 24, 1163, 1294, 1558 |
| AjnI | CCWGG | 6 cut(s) | 317, 566, 719, 873, 1221, 1425 |
| AluBI | AGCT | 9 cut(s) | 424, 1130, 1179, 1216, 1258, 1312, 1375, 1421, 1627 |
| AluI | AGCT | 9 cut(s) | 424, 1130, 1179, 1216, 1258, 1312, 1375, 1421, 1627 |
| Alw26I | GTCTC | 5 cut(s) | 284, 410, 567, 770, 1283 |
| AlwI | GGATC | 3 cut(s) | 49, 451, 834 |
| Ama87I | CYCGRG | 5 cut(s) | 236, 410, 890, 921, 1242 |
| Aor51HI | AGCGCT | 1 cut(s) | 262 |
| ApaI | GGGCCC | 1 cut(s) | 1105 |
| ApeKI | GCWGC | 6 cut(s) | 263, 424, 866, 1207, 1255, 1538 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 614, 646 |
| AspLEI | GCGC | 4 cut(s) | 263, 699, 889, 1646 |
| AspS9I | GGNCC | 5 cut(s) | 322, 576, 1101, 1102, 1300 |
| AsuC2I | CCSGG | 5 cut(s) | 411, 412, 786, 922, 923 |
| AsuHPI | GGTGA | 2 cut(s) | 907, 1609 |
| AsuNHI | GCTAGC | 2 cut(s) | 5, 247 |
| AvaI | CYCGRG | 5 cut(s) | 236, 410, 890, 921, 1242 |
| AvaII | GGWCC | 2 cut(s) | 322, 576 |
| BaeGI | GKGCMC | 1 cut(s) | 1105 |
| BalI | TGGCCA | 2 cut(s) | 170, 719 |
| BanI | GGYRCC | 4 cut(s) | 179, 1019, 1329, 1643 |
| BanII | GRGCYC | 2 cut(s) | 529, 1105 |
| BauI | CACGAG | 1 cut(s) | 1211 |
| BbvCI | CCTCAGC | 1 cut(s) | 1259 |
| BbvI | GCAGC | 6 cut(s) | 250, 411, 853, 1194, 1267, 1525 |
| BceAI | ACGGC | 6 cut(s) | 498, 786, 1156, 1170, 1370, 1510 |
| BciT130I | CCWGG | 6 cut(s) | 319, 568, 721, 875, 1223, 1427 |
| BcnI | CCSGG | 5 cut(s) | 411, 412, 786, 922, 923 |
| BcoDI | GTCTC | 5 cut(s) | 284, 410, 567, 770, 1283 |
| BfaI | CTAG | 8 cut(s) | 6, 131, 201, 248, 267, 755, 1002, 1460 |
| BfmI | CTRYAG | 1 cut(s) | 1037 |
| BfoI | RGCGCY | 2 cut(s) | 264, 1647 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 469, 875 |
| BlpI | GCTNAGC | 1 cut(s) | 1376 |
| Bme18I | GGWCC | 2 cut(s) | 322, 576 |
| BmeT110I | CYCGRG | 5 cut(s) | 236, 410, 890, 921, 1242 |
| BmgT120I | GGNCC | 5 cut(s) | 322, 576, 1101, 1102, 1300 |
| BmrI | ACTGGG | 1 cut(s) | 335 |
| BmsI | GCATC | 1 cut(s) | 1351 |
| BmtI | GCTAGC | 2 cut(s) | 9, 251 |
| BmuI | ACTGGG | 1 cut(s) | 335 |
| BoxI | GACNNNNGTC | 1 cut(s) | 762 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1337, 1369 |
| BpmI | CTGGAG | 2 cut(s) | 1265, 1448 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1259 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1376 |
| BpuEI | CTTGAG | 1 cut(s) | 529 |
| BpuMI | CCSGG | 5 cut(s) | 411, 412, 786, 922, 923 |
| BsaHI | GRCGYC | 1 cut(s) | 1644 |
| BsaI | GGTCTC | 1 cut(s) | 1283 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 763, 793, 845, 875 |
| Bse118I | RCCGGY | 2 cut(s) | 869, 1604 |
| Bse1I | ACTGG | 4 cut(s) | 298, 341, 464, 1515 |
| Bse3DI | GCAATG | 4 cut(s) | 34, 86, 972, 1380 |
| BseBI | CCWGG | 6 cut(s) | 319, 568, 721, 875, 1223, 1427 |
| BseGI | GGATG | 1 cut(s) | 1366 |
| BseMI | GCAATG | 4 cut(s) | 34, 86, 972, 1380 |
| BseMII | CTCAG | 5 cut(s) | 47, 765, 1250, 1367, 1509 |
| BseNI | ACTGG | 4 cut(s) | 298, 341, 464, 1515 |
| BseRI | GAGGAG | 3 cut(s) | 254, 869, 1537 |
| BseSI | GKGCMC | 1 cut(s) | 1105 |
| BseX3I | CGGCCG | 1 cut(s) | 1148 |
| BseXI | GCAGC | 6 cut(s) | 250, 411, 853, 1194, 1267, 1525 |
| BseYI | CCCAGC | 1 cut(s) | 596 |
| BsgI | GTGCAG | 1 cut(s) | 1193 |
| Bsh1236I | CGCG | 7 cut(s) | 50, 697, 699, 815, 831, 887, 1368 |
| Bsh1285I | CGRYCG | 2 cut(s) | 431, 1151 |
| BshNI | GGYRCC | 4 cut(s) | 179, 1019, 1329, 1643 |
| BsiEI | CGRYCG | 2 cut(s) | 431, 1151 |
| BsiHKCI | CYCGRG | 5 cut(s) | 236, 410, 890, 921, 1242 |
| BsiSI | CCGG | 5 cut(s) | 411, 785, 870, 922, 1605 |
| BslFI | GGGAC | 2 cut(s) | 589, 1409 |
| BsmAI | GTCTC | 5 cut(s) | 284, 410, 567, 770, 1283 |
| BsmFI | GGGAC | 2 cut(s) | 589, 1409 |
| BsmI | GAATGC | 1 cut(s) | 809 |
| Bso31I | GGTCTC | 1 cut(s) | 1283 |
| BsoBI | CYCGRG | 5 cut(s) | 236, 410, 890, 921, 1242 |
| Bsp120I | GGGCCC | 1 cut(s) | 1101 |
| Bsp1286I | GDGCHC | 2 cut(s) | 529, 1105 |
| Bsp143I | GATC | 5 cut(s) | 41, 456, 826, 837, 1411 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1376 |
| Bsp19I | CCATGG | 1 cut(s) | 171 |
| Bsp68I | TCGCGA | 1 cut(s) | 815 |
| BspCNI | CTCAG | 5 cut(s) | 48, 766, 1251, 1368, 1510 |
| BspFNI | CGCG | 7 cut(s) | 50, 697, 699, 815, 831, 887, 1368 |
| BspMAI | CTGCAG | 1 cut(s) | 1041 |
| BspOI | GCTAGC | 2 cut(s) | 9, 251 |
| BspPI | GGATC | 3 cut(s) | 49, 451, 834 |
| BspT107I | GGYRCC | 4 cut(s) | 179, 1019, 1329, 1643 |
| BspTNI | GGTCTC | 1 cut(s) | 1283 |
| BsrBI | CCGCTC | 4 cut(s) | 1252, 1327, 1393, 1405 |
| BsrDI | GCAATG | 4 cut(s) | 34, 86, 972, 1380 |
| BsrFI | RCCGGY | 2 cut(s) | 869, 1604 |
| BsrI | ACTGG | 4 cut(s) | 298, 341, 464, 1515 |
| BssAI | RCCGGY | 2 cut(s) | 869, 1604 |
| BssMI | GATC | 5 cut(s) | 41, 456, 826, 837, 1411 |
| BssNI | GRCGYC | 1 cut(s) | 1644 |
| BssSI | CACGAG | 1 cut(s) | 1211 |
| BssT1I | CCWWGG | 4 cut(s) | 171, 484, 670, 1467 |
| Bst2BI | CACGAG | 1 cut(s) | 1211 |
| Bst2UI | CCWGG | 6 cut(s) | 319, 568, 721, 875, 1223, 1427 |
| Bst4CI | ACNGT | 5 cut(s) | 120, 335, 1144, 1167, 1546 |
| Bst6I | CTCTTC | 3 cut(s) | 699, 1062, 1068 |
| BstACI | GRCGYC | 1 cut(s) | 1644 |
| BstDEI | CTNAG | 6 cut(s) | 56, 774, 1259, 1338, 1376, 1518 |
| BstDSI | CCRYGG | 2 cut(s) | 171, 1133 |
| BstENI | CCTNNNNNAGG | 3 cut(s) | 669, 1337, 1589 |
| BstF5I | GGATG | 1 cut(s) | 1366 |
| BstFNI | CGCG | 7 cut(s) | 50, 697, 699, 815, 831, 887, 1368 |
| BstH2I | RGCGCY | 2 cut(s) | 264, 1647 |
| BstHHI | GCGC | 4 cut(s) | 263, 699, 889, 1646 |
| BstKTI | GATC | 5 cut(s) | 44, 459, 829, 840, 1414 |
| BstMAI | GTCTC | 5 cut(s) | 284, 410, 567, 770, 1283 |
| BstMBI | GATC | 5 cut(s) | 41, 456, 826, 837, 1411 |
| BstMCI | CGRYCG | 2 cut(s) | 431, 1151 |
| BstNI | CCWGG | 6 cut(s) | 319, 568, 721, 875, 1223, 1427 |
| BstNSI | RCATGY | 1 cut(s) | 476 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 762 |
| BstSFI | CTRYAG | 1 cut(s) | 1037 |
| BstSLI | GKGCMC | 1 cut(s) | 1105 |
| BstUI | CGCG | 7 cut(s) | 50, 697, 699, 815, 831, 887, 1368 |
| BstV1I | GCAGC | 6 cut(s) | 250, 411, 853, 1194, 1267, 1525 |
| BstX2I | RGATCY | 1 cut(s) | 41 |
| BstYI | RGATCY | 1 cut(s) | 41 |
| BstZI | CGGCCG | 1 cut(s) | 1148 |
| BtgI | CCRYGG | 2 cut(s) | 171, 1133 |
| BtgZI | GCGATG | 1 cut(s) | 205 |
| BtsCI | GGATG | 1 cut(s) | 1366 |
| BtsI | GCAGTG | 1 cut(s) | 1233 |
| BtsIMutI | CAGTG | 7 cut(s) | 53, 116, 348, 471, 771, 1233, 1542 |
| BtuMI | TCGCGA | 1 cut(s) | 815 |
| CfoI | GCGC | 4 cut(s) | 263, 699, 889, 1646 |
| Cfr10I | RCCGGY | 2 cut(s) | 869, 1604 |
| Cfr13I | GGNCC | 5 cut(s) | 322, 576, 1101, 1102, 1300 |
| Cfr9I | CCCGGG | 2 cut(s) | 410, 921 |
| CseI | GACGC | 8 cut(s) | 39, 56, 80, 176, 441, 541, 703, 815 |
| Csp6I | GTAC | 3 cut(s) | 336, 752, 1573 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 955, 990, 1115, 1150 |
| CviAII | CATG | 6 cut(s) | 104, 172, 473, 559, 1024, 1399 |
| CviQI | GTAC | 3 cut(s) | 336, 752, 1573 |
| DdeI | CTNAG | 6 cut(s) | 56, 774, 1259, 1338, 1376, 1518 |
| DinI | GGCGCC | 1 cut(s) | 1645 |
| DpnI | GATC | 5 cut(s) | 43, 458, 828, 839, 1413 |
| DpnII | GATC | 5 cut(s) | 41, 456, 826, 837, 1411 |
| EaeI | YGGCCR | 5 cut(s) | 168, 717, 871, 1148, 1464 |
| EagI | CGGCCG | 1 cut(s) | 1148 |
| Eam1104I | CTCTTC | 3 cut(s) | 699, 1062, 1068 |
| EarI | CTCTTC | 3 cut(s) | 699, 1062, 1068 |
| EciI | GGCGGA | 4 cut(s) | 470, 771, 1286, 1358 |
| EclXI | CGGCCG | 1 cut(s) | 1148 |
| Eco130I | CCWWGG | 4 cut(s) | 171, 484, 670, 1467 |
| Eco147I | AGGCCT | 1 cut(s) | 1006 |
| Eco24I | GRGCYC | 2 cut(s) | 529, 1105 |
| Eco31I | GGTCTC | 1 cut(s) | 1283 |
| Eco47I | GGWCC | 2 cut(s) | 322, 576 |
| Eco47III | AGCGCT | 1 cut(s) | 262 |
| Eco52I | CGGCCG | 1 cut(s) | 1148 |
| Eco57I | CTGAAG | 2 cut(s) | 569, 1469 |
| Eco88I | CYCGRG | 5 cut(s) | 236, 410, 890, 921, 1242 |
| EcoNI | CCTNNNNNAGG | 3 cut(s) | 669, 1337, 1589 |
| EcoO109I | RGGNCCY | 2 cut(s) | 322, 576 |
| EcoRII | CCWGG | 6 cut(s) | 317, 566, 719, 873, 1221, 1425 |
| EcoT14I | CCWWGG | 4 cut(s) | 171, 484, 670, 1467 |
| EcoT38I | GRGCYC | 2 cut(s) | 529, 1105 |
| EgeI | GGCGCC | 1 cut(s) | 1645 |
| EheI | GGCGCC | 1 cut(s) | 1645 |
| ErhI | CCWWGG | 4 cut(s) | 171, 484, 670, 1467 |
| FaeI | CATG | 6 cut(s) | 107, 175, 476, 562, 1027, 1402 |
| FaqI | GGGAC | 2 cut(s) | 589, 1409 |
| FatI | CATG | 6 cut(s) | 103, 171, 472, 558, 1023, 1398 |
| FauI | CCCGC | 7 cut(s) | 290, 387, 488, 564, 607, 1112, 1386 |
| FauNDI | CATATG | 1 cut(s) | 1097 |
| FokI | GGATG | 1 cut(s) | 1373 |
| FriOI | GRGCYC | 2 cut(s) | 529, 1105 |
| FspBI | CTAG | 8 cut(s) | 6, 131, 201, 248, 267, 755, 1002, 1460 |
| GlaI | GCGC | 4 cut(s) | 262, 698, 888, 1645 |
| GsaI | CCCAGC | 1 cut(s) | 600 |
| GsuI | CTGGAG | 2 cut(s) | 1265, 1448 |
| HaeII | RGCGCY | 2 cut(s) | 264, 1647 |
| HapII | CCGG | 5 cut(s) | 411, 785, 870, 922, 1605 |
| HgaI | GACGC | 8 cut(s) | 39, 56, 80, 176, 441, 541, 703, 815 |
| HhaI | GCGC | 4 cut(s) | 263, 699, 889, 1646 |
| Hin1I | GRCGYC | 1 cut(s) | 1644 |
| Hin1II | CATG | 6 cut(s) | 107, 175, 476, 562, 1027, 1402 |
| Hin6I | GCGC | 4 cut(s) | 261, 697, 887, 1644 |
| HinP1I | GCGC | 4 cut(s) | 261, 697, 887, 1644 |
| HpaII | CCGG | 5 cut(s) | 411, 785, 870, 922, 1605 |
| HphI | GGTGA | 2 cut(s) | 907, 1609 |
| Hpy166II | GTNNAC | 2 cut(s) | 346, 505 |
| Hpy188I | TCNGA | 6 cut(s) | 41, 46, 531, 1190, 1534, 1567 |
| Hpy188III | TCNNGA | 6 cut(s) | 329, 379, 643, 814, 1282, 1358 |
| Hpy8I | GTNNAC | 2 cut(s) | 346, 505 |
| Hpy99I | CGWCG | 6 cut(s) | 14, 457, 519, 535, 1016, 1156 |
| HpyCH4III | ACNGT | 5 cut(s) | 120, 335, 1144, 1167, 1546 |
| HpyCH4IV | ACGT | 2 cut(s) | 750, 763 |
| HpyCH4V | TGCA | 2 cut(s) | 1039, 1210 |
| HpyF3I | CTNAG | 6 cut(s) | 56, 774, 1259, 1338, 1376, 1518 |
| HpySE526I | ACGT | 2 cut(s) | 750, 763 |
| Hsp92I | GRCGYC | 1 cut(s) | 1644 |
| Hsp92II | CATG | 6 cut(s) | 107, 175, 476, 562, 1027, 1402 |
| HspAI | GCGC | 4 cut(s) | 261, 697, 887, 1644 |
| KasI | GGCGCC | 1 cut(s) | 1643 |
| KroI | GCCGGC | 1 cut(s) | 869 |
| KroNI | GCCGGC | 1 cut(s) | 871 |
| Kzo9I | GATC | 5 cut(s) | 41, 456, 826, 837, 1411 |
| LmnI | GCTCC | 7 cut(s) | 532, 946, 1135, 1402, 1429, 1524, 1624 |
| Lsp1109I | GCAGC | 6 cut(s) | 250, 411, 853, 1194, 1267, 1525 |
| LweI | GCATC | 1 cut(s) | 1351 |
| MaeI | CTAG | 8 cut(s) | 6, 131, 201, 248, 267, 755, 1002, 1460 |
| MaeII | ACGT | 2 cut(s) | 750, 763 |
| MaeIII | GTNAC | 4 cut(s) | 51, 803, 1228, 1349 |
| MalI | GATC | 5 cut(s) | 43, 458, 828, 839, 1413 |
| MbiI | CCGCTC | 4 cut(s) | 1252, 1327, 1393, 1405 |
| MboI | GATC | 5 cut(s) | 41, 456, 826, 837, 1411 |
| MboII | GAAGA | 4 cut(s) | 716, 1079, 1085, 1126 |
| MflI | RGATCY | 1 cut(s) | 41 |
| MhlI | GDGCHC | 2 cut(s) | 529, 1105 |
| MlsI | TGGCCA | 2 cut(s) | 170, 719 |
| MluCI | AATT | 3 cut(s) | 306, 537, 844 |
| MluI | ACGCGT | 1 cut(s) | 48 |
| MluNI | TGGCCA | 2 cut(s) | 170, 719 |
| Mly113I | GGCGCC | 1 cut(s) | 1644 |
| MlyI | GAGTC | 4 cut(s) | 149, 320, 772, 1346 |
| MmeI | TCCRAC | 4 cut(s) | 554, 685, 1470, 1545 |
| Mox20I | TGGCCA | 2 cut(s) | 170, 719 |
| MroNI | GCCGGC | 1 cut(s) | 869 |
| MscI | TGGCCA | 2 cut(s) | 170, 719 |
| MseI | TTAA | 5 cut(s) | 648, 687, 726, 1473, 1632 |
| Msp20I | TGGCCA | 2 cut(s) | 170, 719 |
| MspA1I | CMGCKG | 6 cut(s) | 232, 278, 495, 596, 1082, 1258 |
| MspI | CCGG | 5 cut(s) | 411, 785, 870, 922, 1605 |
| Mva1269I | GAATGC | 1 cut(s) | 809 |
| MvaI | CCWGG | 6 cut(s) | 319, 568, 721, 875, 1223, 1427 |
| MvnI | CGCG | 7 cut(s) | 50, 697, 699, 815, 831, 887, 1368 |
| NaeI | GCCGGC | 1 cut(s) | 871 |
| NarI | GGCGCC | 1 cut(s) | 1644 |
| NciI | CCSGG | 5 cut(s) | 411, 412, 786, 922, 923 |
| NcoI | CCATGG | 1 cut(s) | 171 |
| NdeI | CATATG | 1 cut(s) | 1097 |
| NdeII | GATC | 5 cut(s) | 41, 456, 826, 837, 1411 |
| NgoMIV | GCCGGC | 1 cut(s) | 869 |
| NheI | GCTAGC | 2 cut(s) | 5, 247 |
| NlaIII | CATG | 6 cut(s) | 107, 175, 476, 562, 1027, 1402 |
| NmeAIII | GCCGAG | 2 cut(s) | 208, 1160 |
| NmuCI | GTSAC | 4 cut(s) | 51, 803, 1228, 1349 |
| NruI | TCGCGA | 1 cut(s) | 815 |
| NspI | RCATGY | 1 cut(s) | 476 |
| PaeI | GCATGC | 1 cut(s) | 476 |
| PaeR7I | CTCGAG | 1 cut(s) | 236 |
| PceI | AGGCCT | 1 cut(s) | 1006 |
| PctI | GAATGC | 1 cut(s) | 809 |
| PdiI | GCCGGC | 1 cut(s) | 871 |
| PfeI | GAWTC | 6 cut(s) | 83, 382, 554, 742, 1033, 1550 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 159 |
| PleI | GAGTC | 4 cut(s) | 148, 319, 772, 1346 |
| PluTI | GGCGCC | 1 cut(s) | 1647 |
| PpsI | GAGTC | 4 cut(s) | 148, 319, 772, 1346 |
| PpuMI | RGGWCCY | 2 cut(s) | 322, 576 |
| PshAI | GACNNNNGTC | 1 cut(s) | 762 |
| Psp5II | RGGWCCY | 2 cut(s) | 322, 576 |
| Psp6I | CCWGG | 6 cut(s) | 317, 566, 719, 873, 1221, 1425 |
| PspFI | CCCAGC | 1 cut(s) | 596 |
| PspGI | CCWGG | 6 cut(s) | 317, 566, 719, 873, 1221, 1425 |
| PspOMI | GGGCCC | 1 cut(s) | 1101 |
| PspPI | GGNCC | 5 cut(s) | 322, 576, 1101, 1102, 1300 |
| PspPPI | RGGWCCY | 2 cut(s) | 322, 576 |
| PspXI | VCTCGAGB | 1 cut(s) | 236 |
| PstI | CTGCAG | 1 cut(s) | 1041 |
| PsuI | RGATCY | 1 cut(s) | 41 |
| PvuII | CAGCTG | 1 cut(s) | 1258 |
| RruI | TCGCGA | 1 cut(s) | 815 |
| RsaI | GTAC | 3 cut(s) | 337, 753, 1574 |
| RsaNI | GTAC | 3 cut(s) | 336, 752, 1573 |
| SaqAI | TTAA | 5 cut(s) | 648, 687, 726, 1473, 1632 |
| Sau3AI | GATC | 5 cut(s) | 41, 456, 826, 837, 1411 |
| Sau96I | GGNCC | 5 cut(s) | 322, 576, 1101, 1102, 1300 |
| SchI | GAGTC | 4 cut(s) | 149, 320, 772, 1346 |
| SduI | GDGCHC | 2 cut(s) | 529, 1105 |
| SfaNI | GCATC | 1 cut(s) | 1351 |
| SfcI | CTRYAG | 1 cut(s) | 1037 |
| SfoI | GGCGCC | 1 cut(s) | 1645 |
| Sfr274I | CTCGAG | 1 cut(s) | 236 |
| SinI | GGWCC | 2 cut(s) | 322, 576 |
| SlaI | CTCGAG | 1 cut(s) | 236 |
| SmaI | CCCGGG | 2 cut(s) | 412, 923 |
| SmlI | CTYRAG | 2 cut(s) | 236, 508 |
| SmoI | CTYRAG | 2 cut(s) | 236, 508 |
| SphI | GCATGC | 1 cut(s) | 476 |
| Sse9I | AATT | 3 cut(s) | 306, 537, 844 |
| SseBI | AGGCCT | 1 cut(s) | 1006 |
| SspDI | GGCGCC | 1 cut(s) | 1643 |
| SspMI | CTAG | 8 cut(s) | 6, 131, 201, 248, 267, 755, 1002, 1460 |
| StuI | AGGCCT | 1 cut(s) | 1006 |
| StyI | CCWWGG | 4 cut(s) | 171, 484, 670, 1467 |
| TaaI | ACNGT | 5 cut(s) | 120, 335, 1144, 1167, 1546 |
| TaiI | ACGT | 2 cut(s) | 753, 766 |
| TaqI | TCGA | 4 cut(s) | 138, 237, 455, 653 |
| TasI | AATT | 3 cut(s) | 306, 537, 844 |
| TfiI | GAWTC | 6 cut(s) | 83, 382, 554, 742, 1033, 1550 |
| Tru1I | TTAA | 5 cut(s) | 648, 687, 726, 1473, 1632 |
| Tru9I | TTAA | 5 cut(s) | 648, 687, 726, 1473, 1632 |
| TscAI | CASTG | 7 cut(s) | 60, 123, 348, 471, 778, 1233, 1549 |
| TseFI | GTSAC | 4 cut(s) | 51, 803, 1228, 1349 |
| TseI | GCWGC | 6 cut(s) | 263, 424, 866, 1207, 1255, 1538 |
| Tsp45I | GTSAC | 4 cut(s) | 51, 803, 1228, 1349 |
| TspDTI | ATGAA | 3 cut(s) | 75, 380, 434 |
| TspGWI | ACGGA | 3 cut(s) | 84, 1122, 1189 |
| TspMI | CCCGGG | 2 cut(s) | 410, 921 |
| TspRI | CASTG | 7 cut(s) | 60, 123, 348, 471, 778, 1233, 1549 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 159 |
| VpaK11BI | GGWCC | 2 cut(s) | 322, 576 |
| XagI | CCTNNNNNAGG | 3 cut(s) | 669, 1337, 1589 |
| XceI | RCATGY | 1 cut(s) | 476 |
| XhoI | CTCGAG | 1 cut(s) | 236 |
| XmaI | CCCGGG | 2 cut(s) | 410, 921 |
| XspI | CTAG | 8 cut(s) | 6, 131, 201, 248, 267, 755, 1002, 1460 |