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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 1227 |
| AccB1I | GGYRCC | 4 cut(s) | 105, 700, 1299, 1589 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1599 |
| AccI | GTMKAC | 1 cut(s) | 1055 |
| AccII | CGCG | 5 cut(s) | 316, 403, 667, 696, 1370 |
| AclWI | GGATC | 1 cut(s) | 1384 |
| AcuI | CTGAAG | 3 cut(s) | 788, 1379, 1806 |
| AcvI | CACGTG | 1 cut(s) | 1475 |
| AcyI | GRCGYC | 3 cut(s) | 106, 1224, 1610 |
| AdeI | CACNNNGTG | 1 cut(s) | 372 |
| AfaI | GTAC | 8 cut(s) | 75, 98, 125, 203, 281, 793, 937, 1520 |
| AflIII | ACRYGT | 2 cut(s) | 401, 1341 |
| AgsI | TTSAA | 8 cut(s) | 179, 257, 451, 1081, 1282, 1496, 1504, 1691 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1716 |
| AjiI | CACGTC | 1 cut(s) | 919 |
| AjnI | CCWGG | 9 cut(s) | 108, 486, 945, 1125, 1146, 1206, 1302, 1635, 1729 |
| AluBI | AGCT | 9 cut(s) | 743, 874, 929, 1088, 1162, 1216, 1484, 1562, 1643 |
| AluI | AGCT | 9 cut(s) | 743, 874, 929, 1088, 1162, 1216, 1484, 1562, 1643 |
| Alw21I | GWGCWC | 1 cut(s) | 910 |
| Alw26I | GTCTC | 3 cut(s) | 365, 407, 1703 |
| AlwI | GGATC | 1 cut(s) | 1384 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1147, 1736 |
| Ama87I | CYCGRG | 3 cut(s) | 824, 867, 1269 |
| AoxI | GGCC | 7 cut(s) | 492, 864, 943, 1180, 1203, 1245, 1548 |
| ApaI | GGGCCC | 1 cut(s) | 868 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 802, 834 |
| AspS9I | GGNCC | 8 cut(s) | 56, 463, 535, 864, 865, 1180, 1204, 1357 |
| AsuC2I | CCSGG | 8 cut(s) | 308, 370, 423, 508, 862, 868, 869, 1361 |
| AsuHPI | GGTGA | 8 cut(s) | 358, 623, 661, 850, 998, 998, 1375, 1454 |
| AvaI | CYCGRG | 3 cut(s) | 824, 867, 1269 |
| AvaII | GGWCC | 4 cut(s) | 56, 463, 535, 1357 |
| BaeGI | GKGCMC | 2 cut(s) | 868, 1474 |
| BanI | GGYRCC | 4 cut(s) | 105, 700, 1299, 1589 |
| BanII | GRGCYC | 4 cut(s) | 560, 868, 1113, 1699 |
| BauI | CACGAG | 2 cut(s) | 291, 1115 |
| BbrPI | CACGTG | 1 cut(s) | 1475 |
| Bbv12I | GWGCWC | 1 cut(s) | 910 |
| BbvCI | CCTCAGC | 2 cut(s) | 1163, 1464 |
| BccI | CCATC | 6 cut(s) | 454, 977, 1244, 1298, 1639, 1764 |
| BceAI | ACGGC | 7 cut(s) | 136, 214, 423, 543, 739, 1046, 1088 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1238, 1272 |
| BciT130I | CCWGG | 9 cut(s) | 110, 488, 947, 1127, 1148, 1208, 1304, 1637, 1731 |
| BcnI | CCSGG | 8 cut(s) | 308, 370, 423, 508, 862, 868, 869, 1361 |
| BcoDI | GTCTC | 3 cut(s) | 365, 407, 1703 |
| BfaI | CTAG | 1 cut(s) | 1436 |
| BfmI | CTRYAG | 2 cut(s) | 1479, 1763 |
| BfoI | RGCGCY | 6 cut(s) | 23, 109, 554, 665, 1532, 1557 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 920, 1418 |
| BlpI | GCTNAGC | 1 cut(s) | 554 |
| Bme18I | GGWCC | 4 cut(s) | 56, 463, 535, 1357 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1716 |
| BmeT110I | CYCGRG | 3 cut(s) | 824, 867, 1269 |
| BmgBI | CACGTC | 1 cut(s) | 919 |
| BmgT120I | GGNCC | 8 cut(s) | 56, 463, 535, 864, 865, 1180, 1204, 1357 |
| BmrI | ACTGGG | 2 cut(s) | 897, 1710 |
| BmsI | GCATC | 5 cut(s) | 327, 1246, 1255, 1605, 1771 |
| BmuI | ACTGGG | 2 cut(s) | 897, 1710 |
| BoxI | GACNNNNGTC | 1 cut(s) | 357 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 880, 912 |
| BpmI | CTGGAG | 5 cut(s) | 509, 807, 909, 1169, 1325 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1163, 1464 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 554 |
| BpuMI | CCSGG | 8 cut(s) | 308, 370, 423, 508, 862, 868, 869, 1361 |
| BsaAI | YACGTR | 2 cut(s) | 100, 1475 |
| BsaHI | GRCGYC | 3 cut(s) | 106, 1224, 1610 |
| BsaI | GGTCTC | 1 cut(s) | 1703 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 140, 170, 218, 248, 482, 512 |
| Bse118I | RCCGGY | 3 cut(s) | 682, 1550, 1618 |
| Bse1I | ACTGG | 5 cut(s) | 646, 903, 1656, 1716, 1773 |
| BseBI | CCWGG | 9 cut(s) | 110, 488, 947, 1127, 1148, 1208, 1304, 1637, 1731 |
| BseGI | GGATG | 4 cut(s) | 282, 1270, 1631, 1756 |
| BseMII | CTCAG | 4 cut(s) | 545, 576, 1154, 1455 |
| BseNI | ACTGG | 5 cut(s) | 646, 903, 1656, 1716, 1773 |
| BsePI | GCGCGC | 1 cut(s) | 314 |
| BseRI | GAGGAG | 4 cut(s) | 353, 408, 857, 860 |
| BseSI | GKGCMC | 2 cut(s) | 868, 1474 |
| BseYI | CCCAGC | 1 cut(s) | 743 |
| BsgI | GTGCAG | 2 cut(s) | 426, 1646 |
| Bsh1236I | CGCG | 5 cut(s) | 316, 403, 667, 696, 1370 |
| Bsh1285I | CGRYCG | 3 cut(s) | 63, 1055, 1059 |
| BshFI | GGCC | 7 cut(s) | 494, 866, 945, 1182, 1205, 1247, 1550 |
| BshNI | GGYRCC | 4 cut(s) | 105, 700, 1299, 1589 |
| BsiEI | CGRYCG | 3 cut(s) | 63, 1055, 1059 |
| BsiHKAI | GWGCWC | 1 cut(s) | 910 |
| BsiHKCI | CYCGRG | 3 cut(s) | 824, 867, 1269 |
| BslFI | GGGAC | 6 cut(s) | 652, 1007, 1205, 1330, 1370, 1704 |
| BsmAI | GTCTC | 3 cut(s) | 365, 407, 1703 |
| BsmBI | CGTCTC | 1 cut(s) | 365 |
| BsmFI | GGGAC | 6 cut(s) | 652, 1007, 1205, 1330, 1370, 1704 |
| BsnI | GGCC | 7 cut(s) | 494, 866, 945, 1182, 1205, 1247, 1550 |
| Bso31I | GGTCTC | 1 cut(s) | 1703 |
| BsoBI | CYCGRG | 3 cut(s) | 824, 867, 1269 |
| Bsp120I | GGGCCC | 1 cut(s) | 864 |
| Bsp1286I | GDGCHC | 6 cut(s) | 560, 868, 910, 1113, 1474, 1699 |
| Bsp143I | GATC | 2 cut(s) | 1389, 1425 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 554 |
| BspANI | GGCC | 7 cut(s) | 494, 866, 945, 1182, 1205, 1247, 1550 |
| BspCNI | CTCAG | 4 cut(s) | 546, 575, 1155, 1456 |
| BspFNI | CGCG | 5 cut(s) | 316, 403, 667, 696, 1370 |
| BspMAI | CTGCAG | 2 cut(s) | 1483, 1767 |
| BspPI | GGATC | 1 cut(s) | 1384 |
| BspT107I | GGYRCC | 4 cut(s) | 105, 700, 1299, 1589 |
| BspTNI | GGTCTC | 1 cut(s) | 1703 |
| BsrFI | RCCGGY | 3 cut(s) | 682, 1550, 1618 |
| BsrI | ACTGG | 5 cut(s) | 646, 903, 1656, 1716, 1773 |
| BssAI | RCCGGY | 3 cut(s) | 682, 1550, 1618 |
| BssHII | GCGCGC | 1 cut(s) | 314 |
| BssMI | GATC | 2 cut(s) | 1389, 1425 |
| BssNI | GRCGYC | 3 cut(s) | 106, 1224, 1610 |
| BssSI | CACGAG | 2 cut(s) | 291, 1115 |
| Bst2BI | CACGAG | 2 cut(s) | 291, 1115 |
| Bst2UI | CCWGG | 9 cut(s) | 110, 488, 947, 1127, 1148, 1208, 1304, 1637, 1731 |
| Bst4CI | ACNGT | 4 cut(s) | 64, 381, 467, 715 |
| Bst6I | CTCTTC | 2 cut(s) | 294, 834 |
| BstACI | GRCGYC | 3 cut(s) | 106, 1224, 1610 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1478 |
| BstBAI | YACGTR | 2 cut(s) | 100, 1475 |
| BstDEI | CTNAG | 4 cut(s) | 554, 562, 1163, 1464 |
| BstDSI | CCRYGG | 2 cut(s) | 63, 665 |
| BstEII | GGTNACC | 2 cut(s) | 856, 1363 |
| BstF5I | GGATG | 4 cut(s) | 282, 1270, 1631, 1756 |
| BstFNI | CGCG | 5 cut(s) | 316, 403, 667, 696, 1370 |
| BstH2I | RGCGCY | 6 cut(s) | 23, 109, 554, 665, 1532, 1557 |
| BstKTI | GATC | 2 cut(s) | 1392, 1428 |
| BstMAI | GTCTC | 3 cut(s) | 365, 407, 1703 |
| BstMBI | GATC | 2 cut(s) | 1389, 1425 |
| BstMCI | CGRYCG | 3 cut(s) | 63, 1055, 1059 |
| BstNI | CCWGG | 9 cut(s) | 110, 488, 947, 1127, 1148, 1208, 1304, 1637, 1731 |
| BstNSI | RCATGY | 2 cut(s) | 1100, 1345 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 357 |
| BstPI | GGTNACC | 2 cut(s) | 856, 1363 |
| BstSFI | CTRYAG | 2 cut(s) | 1479, 1763 |
| BstSLI | GKGCMC | 2 cut(s) | 868, 1474 |
| BstUI | CGCG | 5 cut(s) | 316, 403, 667, 696, 1370 |
| BstX2I | RGATCY | 1 cut(s) | 1389 |
| BstYI | RGATCY | 1 cut(s) | 1389 |
| BsuRI | GGCC | 7 cut(s) | 494, 866, 945, 1182, 1205, 1247, 1550 |
| BtgI | CCRYGG | 2 cut(s) | 63, 665 |
| BtgZI | GCGATG | 2 cut(s) | 473, 1269 |
| BtrI | CACGTC | 1 cut(s) | 919 |
| BtsCI | GGATG | 4 cut(s) | 282, 1270, 1631, 1756 |
| BtsI | GCAGTG | 4 cut(s) | 689, 1548, 1668, 1760 |
| BtsIMutI | CAGTG | 7 cut(s) | 689, 910, 1548, 1663, 1668, 1760, 1780 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1147, 1736 |
| Cfr10I | RCCGGY | 3 cut(s) | 682, 1550, 1618 |
| Cfr13I | GGNCC | 8 cut(s) | 56, 463, 535, 864, 865, 1180, 1204, 1357 |
| Cfr42I | CCGCGG | 1 cut(s) | 668 |
| Cfr9I | CCCGGG | 1 cut(s) | 867 |
| CseI | GACGC | 5 cut(s) | 409, 452, 1122, 1599, 1811 |
| Csp6I | GTAC | 8 cut(s) | 74, 97, 124, 202, 280, 792, 936, 1519 |
| CviAII | CATG | 4 cut(s) | 496, 586, 1097, 1342 |
| CviQI | GTAC | 8 cut(s) | 74, 97, 124, 202, 280, 792, 936, 1519 |
| DdeI | CTNAG | 4 cut(s) | 554, 562, 1163, 1464 |
| DinI | GGCGCC | 1 cut(s) | 107 |
| DpnI | GATC | 2 cut(s) | 1391, 1427 |
| DpnII | GATC | 2 cut(s) | 1389, 1425 |
| DraIII | CACNNNGTG | 1 cut(s) | 372 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1716 |
| Eam1104I | CTCTTC | 2 cut(s) | 294, 834 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1716 |
| EarI | CTCTTC | 2 cut(s) | 294, 834 |
| EciI | GGCGGA | 7 cut(s) | 83, 349, 888, 1277, 1436, 1529, 1809 |
| Eco24I | GRGCYC | 4 cut(s) | 560, 868, 1113, 1699 |
| Eco31I | GGTCTC | 1 cut(s) | 1703 |
| Eco47I | GGWCC | 4 cut(s) | 56, 463, 535, 1357 |
| Eco57I | CTGAAG | 3 cut(s) | 788, 1379, 1806 |
| Eco72I | CACGTG | 1 cut(s) | 1475 |
| Eco88I | CYCGRG | 3 cut(s) | 824, 867, 1269 |
| Eco91I | GGTNACC | 2 cut(s) | 856, 1363 |
| EcoO109I | RGGNCCY | 1 cut(s) | 864 |
| EcoO65I | GGTNACC | 2 cut(s) | 856, 1363 |
| EcoRII | CCWGG | 9 cut(s) | 108, 486, 945, 1125, 1146, 1206, 1302, 1635, 1729 |
| EcoT38I | GRGCYC | 4 cut(s) | 560, 868, 1113, 1699 |
| EgeI | GGCGCC | 1 cut(s) | 107 |
| EheI | GGCGCC | 1 cut(s) | 107 |
| Esp3I | CGTCTC | 1 cut(s) | 365 |
| FaeI | CATG | 4 cut(s) | 499, 589, 1100, 1345 |
| FaiI | YATR | 8 cut(s) | 185, 263, 497, 501, 587, 740, 1098, 1343 |
| FaqI | GGGAC | 6 cut(s) | 652, 1007, 1205, 1330, 1370, 1704 |
| FatI | CATG | 4 cut(s) | 495, 585, 1096, 1341 |
| FblI | GTMKAC | 1 cut(s) | 1055 |
| FokI | GGATG | 4 cut(s) | 269, 1277, 1618, 1743 |
| FriOI | GRGCYC | 4 cut(s) | 560, 868, 1113, 1699 |
| FspBI | CTAG | 1 cut(s) | 1436 |
| GsaI | CCCAGC | 1 cut(s) | 747 |
| GsuI | CTGGAG | 5 cut(s) | 509, 807, 909, 1169, 1325 |
| HaeII | RGCGCY | 6 cut(s) | 23, 109, 554, 665, 1532, 1557 |
| HaeIII | GGCC | 7 cut(s) | 494, 866, 945, 1182, 1205, 1247, 1550 |
| HgaI | GACGC | 5 cut(s) | 409, 452, 1122, 1599, 1811 |
| Hin1I | GRCGYC | 3 cut(s) | 106, 1224, 1610 |
| Hin1II | CATG | 4 cut(s) | 499, 589, 1100, 1345 |
| HincII | GTYRAC | 3 cut(s) | 821, 1056, 1222 |
| HindII | GTYRAC | 3 cut(s) | 821, 1056, 1222 |
| HphI | GGTGA | 8 cut(s) | 358, 623, 661, 850, 998, 998, 1375, 1454 |
| Hpy166II | GTNNAC | 7 cut(s) | 97, 535, 794, 821, 1056, 1222, 1407 |
| Hpy188I | TCNGA | 4 cut(s) | 172, 250, 565, 1738 |
| Hpy188III | TCNNGA | 4 cut(s) | 286, 293, 451, 1186 |
| Hpy8I | GTNNAC | 7 cut(s) | 97, 535, 794, 821, 1056, 1222, 1407 |
| Hpy99I | CGWCG | 9 cut(s) | 146, 157, 235, 727, 920, 1229, 1289, 1615, 1805 |
| HpyCH4III | ACNGT | 4 cut(s) | 64, 381, 467, 715 |
| HpyCH4IV | ACGT | 5 cut(s) | 99, 918, 1224, 1284, 1474 |
| HpyCH4V | TGCA | 6 cut(s) | 407, 592, 1481, 1579, 1627, 1765 |
| HpyF3I | CTNAG | 4 cut(s) | 554, 562, 1163, 1464 |
| HpySE526I | ACGT | 5 cut(s) | 99, 918, 1224, 1284, 1474 |
| Hsp92I | GRCGYC | 3 cut(s) | 106, 1224, 1610 |
| Hsp92II | CATG | 4 cut(s) | 499, 589, 1100, 1345 |
| KasI | GGCGCC | 1 cut(s) | 105 |
| KroI | GCCGGC | 2 cut(s) | 682, 1550 |
| KroNI | GCCGGC | 2 cut(s) | 684, 1552 |
| KspI | CCGCGG | 1 cut(s) | 668 |
| Kzo9I | GATC | 2 cut(s) | 1389, 1425 |
| LweI | GCATC | 5 cut(s) | 327, 1246, 1255, 1605, 1771 |
| MaeI | CTAG | 1 cut(s) | 1436 |
| MaeII | ACGT | 5 cut(s) | 99, 918, 1224, 1284, 1474 |
| MaeIII | GTNAC | 4 cut(s) | 440, 733, 856, 1363 |
| MalI | GATC | 2 cut(s) | 1391, 1427 |
| MboI | GATC | 2 cut(s) | 1389, 1425 |
| MboII | GAAGA | 5 cut(s) | 311, 851, 892, 1181, 1390 |
| MfeI | CAATTG | 1 cut(s) | 395 |
| MflI | RGATCY | 1 cut(s) | 1389 |
| MhlI | GDGCHC | 6 cut(s) | 560, 868, 910, 1113, 1474, 1699 |
| MluCI | AATT | 4 cut(s) | 89, 162, 240, 395 |
| MluI | ACGCGT | 1 cut(s) | 401 |
| Mly113I | GGCGCC | 1 cut(s) | 106 |
| MlyI | GAGTC | 5 cut(s) | 283, 409, 836, 1079, 1412 |
| MmeI | TCCRAC | 1 cut(s) | 1311 |
| MroNI | GCCGGC | 2 cut(s) | 682, 1550 |
| MseI | TTAA | 2 cut(s) | 165, 243 |
| MslI | CAYNNNNRTG | 1 cut(s) | 606 |
| MspA1I | CMGCKG | 7 cut(s) | 667, 785, 929, 1216, 1399, 1484, 1490 |
| MunI | CAATTG | 1 cut(s) | 395 |
| MvaI | CCWGG | 9 cut(s) | 110, 488, 947, 1127, 1148, 1208, 1304, 1637, 1731 |
| MvnI | CGCG | 5 cut(s) | 316, 403, 667, 696, 1370 |
| NaeI | GCCGGC | 2 cut(s) | 684, 1552 |
| NarI | GGCGCC | 1 cut(s) | 106 |
| NciI | CCSGG | 8 cut(s) | 308, 370, 423, 508, 862, 868, 869, 1361 |
| NdeII | GATC | 2 cut(s) | 1389, 1425 |
| NgoMIV | GCCGGC | 2 cut(s) | 682, 1550 |
| NlaIII | CATG | 4 cut(s) | 499, 589, 1100, 1345 |
| NmeAIII | GCCGAG | 1 cut(s) | 994 |
| NmuCI | GTSAC | 4 cut(s) | 440, 733, 856, 1363 |
| NspI | RCATGY | 2 cut(s) | 1100, 1345 |
| PaeR7I | CTCGAG | 1 cut(s) | 824 |
| PasI | CCCWGGG | 1 cut(s) | 1730 |
| PauI | GCGCGC | 1 cut(s) | 314 |
| PciI | ACATGT | 1 cut(s) | 1341 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 719, 1290 |
| PdiI | GCCGGC | 2 cut(s) | 684, 1552 |
| PfeI | GAWTC | 6 cut(s) | 337, 568, 798, 950, 1026, 1496 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1599 |
| PfoI | TCCNGGA | 1 cut(s) | 486 |
| PleI | GAGTC | 5 cut(s) | 283, 409, 835, 1078, 1411 |
| PluTI | GGCGCC | 1 cut(s) | 109 |
| PmaCI | CACGTG | 1 cut(s) | 1475 |
| PmlI | CACGTG | 1 cut(s) | 1475 |
| PpsI | GAGTC | 5 cut(s) | 283, 409, 835, 1078, 1411 |
| Ppu21I | YACGTR | 2 cut(s) | 100, 1475 |
| PscI | ACATGT | 1 cut(s) | 1341 |
| PshAI | GACNNNNGTC | 1 cut(s) | 357 |
| Psp6I | CCWGG | 9 cut(s) | 108, 486, 945, 1125, 1146, 1206, 1302, 1635, 1729 |
| PspCI | CACGTG | 1 cut(s) | 1475 |
| PspEI | GGTNACC | 2 cut(s) | 856, 1363 |
| PspFI | CCCAGC | 1 cut(s) | 743 |
| PspGI | CCWGG | 9 cut(s) | 108, 486, 945, 1125, 1146, 1206, 1302, 1635, 1729 |
| PspOMI | GGGCCC | 1 cut(s) | 864 |
| PspPI | GGNCC | 8 cut(s) | 56, 463, 535, 864, 865, 1180, 1204, 1357 |
| PspXI | VCTCGAGB | 1 cut(s) | 824 |
| PstI | CTGCAG | 2 cut(s) | 1483, 1767 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1147, 1736 |
| PsuI | RGATCY | 1 cut(s) | 1389 |
| PteI | GCGCGC | 1 cut(s) | 314 |
| PvuII | CAGCTG | 3 cut(s) | 929, 1216, 1484 |
| RsaI | GTAC | 8 cut(s) | 75, 98, 125, 203, 281, 793, 937, 1520 |
| RsaNI | GTAC | 8 cut(s) | 74, 97, 124, 202, 280, 792, 936, 1519 |
| RseI | CAYNNNNRTG | 1 cut(s) | 606 |
| SacII | CCGCGG | 1 cut(s) | 668 |
| SalI | GTCGAC | 1 cut(s) | 1054 |
| SaqAI | TTAA | 2 cut(s) | 165, 243 |
| Sau3AI | GATC | 2 cut(s) | 1389, 1425 |
| Sau96I | GGNCC | 8 cut(s) | 56, 463, 535, 864, 865, 1180, 1204, 1357 |
| SchI | GAGTC | 5 cut(s) | 283, 409, 836, 1079, 1412 |
| SduI | GDGCHC | 6 cut(s) | 560, 868, 910, 1113, 1474, 1699 |
| SfaNI | GCATC | 5 cut(s) | 327, 1246, 1255, 1605, 1771 |
| SfcI | CTRYAG | 2 cut(s) | 1479, 1763 |
| SfoI | GGCGCC | 1 cut(s) | 107 |
| Sfr274I | CTCGAG | 1 cut(s) | 824 |
| Sfr303I | CCGCGG | 1 cut(s) | 668 |
| SgrBI | CCGCGG | 1 cut(s) | 668 |
| SinI | GGWCC | 4 cut(s) | 56, 463, 535, 1357 |
| SlaI | CTCGAG | 1 cut(s) | 824 |
| SmaI | CCCGGG | 1 cut(s) | 869 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 606 |
| SmlI | CTYRAG | 1 cut(s) | 824 |
| SmoI | CTYRAG | 1 cut(s) | 824 |
| Sse9I | AATT | 4 cut(s) | 89, 162, 240, 395 |
| SspDI | GGCGCC | 1 cut(s) | 105 |
| SspMI | CTAG | 1 cut(s) | 1436 |
| TaaI | ACNGT | 4 cut(s) | 64, 381, 467, 715 |
| TaiI | ACGT | 5 cut(s) | 102, 921, 1227, 1287, 1477 |
| TaqI | TCGA | 7 cut(s) | 722, 825, 887, 1055, 1227, 1293, 1613 |
| TaqII | GACCGA | 2 cut(s) | 73, 1041 |
| TasI | AATT | 4 cut(s) | 89, 162, 240, 395 |
| TatI | WGTACW | 1 cut(s) | 1518 |
| TfiI | GAWTC | 6 cut(s) | 337, 568, 798, 950, 1026, 1496 |
| Tru1I | TTAA | 2 cut(s) | 165, 243 |
| Tru9I | TTAA | 2 cut(s) | 165, 243 |
| TscAI | CASTG | 7 cut(s) | 696, 910, 1548, 1663, 1675, 1767, 1780 |
| TseFI | GTSAC | 4 cut(s) | 440, 733, 856, 1363 |
| Tsp45I | GTSAC | 4 cut(s) | 440, 733, 856, 1363 |
| TspGWI | ACGGA | 3 cut(s) | 347, 740, 806 |
| TspMI | CCCGGG | 1 cut(s) | 867 |
| TspRI | CASTG | 7 cut(s) | 696, 910, 1548, 1663, 1675, 1767, 1780 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1599 |
| VpaK11BI | GGWCC | 4 cut(s) | 56, 463, 535, 1357 |
| XceI | RCATGY | 2 cut(s) | 1100, 1345 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1144 |
| XhoI | CTCGAG | 1 cut(s) | 824 |
| XmaI | CCCGGG | 1 cut(s) | 867 |
| XmiI | GTMKAC | 1 cut(s) | 1055 |
| XspI | CTAG | 1 cut(s) | 1436 |
| ZraI | GACGTC | 1 cut(s) | 1225 |