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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 652 |
| AccB1I | GGYRCC | 3 cut(s) | 94, 166, 714 |
| AccBSI | CCGCTC | 4 cut(s) | 406, 433, 712, 733 |
| AccI | GTMKAC | 1 cut(s) | 470 |
| AccII | CGCG | 2 cut(s) | 111, 211 |
| AclI | AACGTT | 1 cut(s) | 699 |
| AclWI | GGATC | 1 cut(s) | 729 |
| AcoI | YGGCCR | 1 cut(s) | 315 |
| AcyI | GRCGYC | 3 cut(s) | 167, 548, 649 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 142, 143, 176, 711 |
| AgeI | ACCGGT | 1 cut(s) | 774 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 180 |
| AjiI | CACGTC | 1 cut(s) | 514 |
| AjnI | CCWGG | 5 cut(s) | 360, 450, 621, 683, 717 |
| AluBI | AGCT | 3 cut(s) | 577, 694, 745 |
| AluI | AGCT | 3 cut(s) | 577, 694, 745 |
| Alw26I | GTCTC | 1 cut(s) | 765 |
| AlwI | GGATC | 1 cut(s) | 729 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 562 |
| Ama87I | CYCGRG | 1 cut(s) | 282 |
| AoxI | GGCC | 8 cut(s) | 188, 279, 315, 358, 448, 595, 618, 660 |
| ApaI | GGGCCC | 1 cut(s) | 283 |
| ApeKI | GCWGC | 3 cut(s) | 34, 289, 556 |
| AsiGI | ACCGGT | 1 cut(s) | 774 |
| AspLEI | GCGC | 4 cut(s) | 79, 111, 135, 169 |
| AspS9I | GGNCC | 7 cut(s) | 54, 182, 279, 280, 595, 619, 772 |
| AsuHPI | GGTGA | 3 cut(s) | 38, 413, 413 |
| AvaI | CYCGRG | 1 cut(s) | 282 |
| AvaII | GGWCC | 3 cut(s) | 54, 182, 772 |
| BaeGI | GKGCMC | 3 cut(s) | 209, 283, 513 |
| BanI | GGYRCC | 3 cut(s) | 94, 166, 714 |
| BanII | GRGCYC | 1 cut(s) | 283 |
| BbvI | GCAGC | 3 cut(s) | 21, 301, 568 |
| BccI | CCATC | 2 cut(s) | 23, 24 |
| BceAI | ACGGC | 3 cut(s) | 26, 461, 503 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 308, 342 |
| BciT130I | CCWGG | 5 cut(s) | 362, 452, 623, 685, 719 |
| BcoDI | GTCTC | 1 cut(s) | 765 |
| BfoI | RGCGCY | 2 cut(s) | 80, 170 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 47 |
| Bme1390I | CCNGG | 5 cut(s) | 362, 452, 623, 685, 719 |
| Bme18I | GGWCC | 3 cut(s) | 54, 182, 772 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 180 |
| BmeT110I | CYCGRG | 1 cut(s) | 282 |
| BmgBI | CACGTC | 1 cut(s) | 514 |
| BmgT120I | GGNCC | 7 cut(s) | 54, 182, 279, 280, 595, 619, 772 |
| BmiI | GGNNCC | 8 cut(s) | 55, 96, 168, 183, 280, 281, 312, 716 |
| BmrFI | CCNGG | 5 cut(s) | 362, 452, 623, 685, 719 |
| BmrI | ACTGGG | 1 cut(s) | 285 |
| BmsI | GCATC | 2 cut(s) | 661, 670 |
| BmuI | ACTGGG | 1 cut(s) | 285 |
| BoxI | GACNNNNGTC | 1 cut(s) | 476 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 295, 327 |
| BpmI | CTGGAG | 4 cut(s) | 229, 473, 584, 767 |
| Bpu10I | CCTNAGC | 1 cut(s) | 578 |
| BsaHI | GRCGYC | 3 cut(s) | 167, 548, 649 |
| BsaJI | CCNNGG | 6 cut(s) | 80, 141, 185, 318, 621, 684 |
| BsaWI | WCCGGW | 1 cut(s) | 774 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 142, 143, 176, 711 |
| Bse118I | RCCGGY | 3 cut(s) | 56, 97, 774 |
| Bse1I | ACTGG | 2 cut(s) | 246, 280 |
| BseBI | CCWGG | 5 cut(s) | 362, 452, 623, 685, 719 |
| BseDI | CCNNGG | 6 cut(s) | 80, 141, 185, 318, 621, 684 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 142, 143, 176, 711 |
| BseNI | ACTGG | 2 cut(s) | 246, 280 |
| BseRI | GAGGAG | 1 cut(s) | 272 |
| BseSI | GKGCMC | 3 cut(s) | 209, 283, 513 |
| BseX3I | CGGCCG | 1 cut(s) | 315 |
| BseXI | GCAGC | 3 cut(s) | 21, 301, 568 |
| BseYI | CCCAGC | 1 cut(s) | 436 |
| BsgI | GTGCAG | 1 cut(s) | 788 |
| Bsh1236I | CGCG | 2 cut(s) | 111, 211 |
| Bsh1285I | CGRYCG | 3 cut(s) | 318, 470, 474 |
| BshFI | GGCC | 8 cut(s) | 190, 281, 317, 360, 450, 597, 620, 662 |
| BshNI | GGYRCC | 3 cut(s) | 94, 166, 714 |
| BshTI | ACCGGT | 1 cut(s) | 774 |
| BsiEI | CGRYCG | 3 cut(s) | 318, 470, 474 |
| BsiHKCI | CYCGRG | 1 cut(s) | 282 |
| BsiSI | CCGG | 4 cut(s) | 57, 98, 314, 775 |
| BslFI | GGGAC | 2 cut(s) | 67, 422 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 142, 143, 176, 711 |
| BsmAI | GTCTC | 1 cut(s) | 765 |
| BsmFI | GGGAC | 2 cut(s) | 67, 422 |
| BsnI | GGCC | 8 cut(s) | 190, 281, 317, 360, 450, 597, 620, 662 |
| BsoBI | CYCGRG | 1 cut(s) | 282 |
| Bsp120I | GGGCCC | 1 cut(s) | 279 |
| Bsp1286I | GDGCHC | 3 cut(s) | 209, 283, 513 |
| Bsp143I | GATC | 1 cut(s) | 721 |
| BspANI | GGCC | 8 cut(s) | 190, 281, 317, 360, 450, 597, 620, 662 |
| BspFNI | CGCG | 2 cut(s) | 111, 211 |
| BspHI | TCATGA | 1 cut(s) | 529 |
| BspLI | GGNNCC | 8 cut(s) | 55, 96, 168, 183, 280, 281, 312, 716 |
| BspPI | GGATC | 1 cut(s) | 729 |
| BspT107I | GGYRCC | 3 cut(s) | 94, 166, 714 |
| BsrBI | CCGCTC | 4 cut(s) | 406, 433, 712, 733 |
| BsrFI | RCCGGY | 3 cut(s) | 56, 97, 774 |
| BsrI | ACTGG | 2 cut(s) | 246, 280 |
| BssAI | RCCGGY | 3 cut(s) | 56, 97, 774 |
| BssECI | CCNNGG | 6 cut(s) | 80, 141, 185, 318, 621, 684 |
| BssMI | GATC | 1 cut(s) | 721 |
| BssNI | GRCGYC | 3 cut(s) | 167, 548, 649 |
| Bst2UI | CCWGG | 5 cut(s) | 362, 452, 623, 685, 719 |
| Bst4CI | ACNGT | 2 cut(s) | 130, 401 |
| Bst6I | CTCTTC | 1 cut(s) | 249 |
| BstACI | GRCGYC | 3 cut(s) | 167, 548, 649 |
| BstC8I | GCNNGC | 9 cut(s) | 39, 99, 192, 209, 236, 309, 431, 595, 692 |
| BstDEI | CTNAG | 1 cut(s) | 578 |
| BstFNI | CGCG | 2 cut(s) | 111, 211 |
| BstH2I | RGCGCY | 2 cut(s) | 80, 170 |
| BstHHI | GCGC | 4 cut(s) | 79, 111, 135, 169 |
| BstKTI | GATC | 1 cut(s) | 724 |
| BstMAI | GTCTC | 1 cut(s) | 765 |
| BstMBI | GATC | 1 cut(s) | 721 |
| BstMCI | CGRYCG | 3 cut(s) | 318, 470, 474 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 47, 103, 115, 164, 335, 380, 680 |
| BstNI | CCWGG | 5 cut(s) | 362, 452, 623, 685, 719 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 476 |
| BstSCI | CCNGG | 5 cut(s) | 360, 450, 621, 683, 717 |
| BstSLI | GKGCMC | 3 cut(s) | 209, 283, 513 |
| BstUI | CGCG | 2 cut(s) | 111, 211 |
| BstV1I | GCAGC | 3 cut(s) | 21, 301, 568 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 23 |
| BstZI | CGGCCG | 1 cut(s) | 315 |
| BsuRI | GGCC | 8 cut(s) | 190, 281, 317, 360, 450, 597, 620, 662 |
| BtgZI | GCGATG | 1 cut(s) | 684 |
| BtrI | CACGTC | 1 cut(s) | 514 |
| BtsIMutI | CAGTG | 1 cut(s) | 253 |
| Cac8I | GCNNGC | 9 cut(s) | 39, 99, 192, 209, 236, 309, 431, 595, 692 |
| CaiI | CAGNNNCTG | 1 cut(s) | 562 |
| CciI | TCATGA | 1 cut(s) | 529 |
| CfoI | GCGC | 4 cut(s) | 79, 111, 135, 169 |
| Cfr10I | RCCGGY | 3 cut(s) | 56, 97, 774 |
| Cfr13I | GGNCC | 7 cut(s) | 54, 182, 279, 280, 595, 619, 772 |
| CseI | GACGC | 1 cut(s) | 537 |
| CspAI | ACCGGT | 1 cut(s) | 774 |
| CviAII | CATG | 1 cut(s) | 530 |
| DdeI | CTNAG | 1 cut(s) | 578 |
| DinI | GGCGCC | 1 cut(s) | 168 |
| DpnI | GATC | 1 cut(s) | 723 |
| DpnII | GATC | 1 cut(s) | 721 |
| DriI | GACNNNNNGTC | 1 cut(s) | 180 |
| EaeI | YGGCCR | 1 cut(s) | 315 |
| EagI | CGGCCG | 1 cut(s) | 315 |
| Eam1104I | CTCTTC | 1 cut(s) | 249 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 180 |
| EarI | CTCTTC | 1 cut(s) | 249 |
| EclXI | CGGCCG | 1 cut(s) | 315 |
| Eco147I | AGGCCT | 1 cut(s) | 190 |
| Eco24I | GRGCYC | 1 cut(s) | 283 |
| Eco47I | GGWCC | 3 cut(s) | 54, 182, 772 |
| Eco52I | CGGCCG | 1 cut(s) | 315 |
| Eco88I | CYCGRG | 1 cut(s) | 282 |
| EcoO109I | RGGNCCY | 1 cut(s) | 279 |
| EcoRII | CCWGG | 5 cut(s) | 360, 450, 621, 683, 717 |
| EcoT38I | GRGCYC | 1 cut(s) | 283 |
| EgeI | GGCGCC | 1 cut(s) | 168 |
| EheI | GGCGCC | 1 cut(s) | 168 |
| FaeI | CATG | 1 cut(s) | 533 |
| FaiI | YATR | 4 cut(s) | 155, 531, 738, 758 |
| FaqI | GGGAC | 2 cut(s) | 67, 422 |
| FatI | CATG | 1 cut(s) | 529 |
| FauI | CCCGC | 7 cut(s) | 43, 46, 53, 151, 204, 399, 586 |
| FblI | GTMKAC | 1 cut(s) | 470 |
| FriOI | GRGCYC | 1 cut(s) | 283 |
| GlaI | GCGC | 4 cut(s) | 78, 110, 134, 168 |
| GsaI | CCCAGC | 1 cut(s) | 440 |
| GsuI | CTGGAG | 4 cut(s) | 229, 473, 584, 767 |
| HaeII | RGCGCY | 2 cut(s) | 80, 170 |
| HaeIII | GGCC | 8 cut(s) | 190, 281, 317, 360, 450, 597, 620, 662 |
| HapII | CCGG | 4 cut(s) | 57, 98, 314, 775 |
| HgaI | GACGC | 1 cut(s) | 537 |
| HhaI | GCGC | 4 cut(s) | 79, 111, 135, 169 |
| Hin1I | GRCGYC | 3 cut(s) | 167, 548, 649 |
| Hin1II | CATG | 1 cut(s) | 533 |
| Hin6I | GCGC | 4 cut(s) | 77, 109, 133, 167 |
| HinP1I | GCGC | 4 cut(s) | 77, 109, 133, 167 |
| HincII | GTYRAC | 2 cut(s) | 471, 780 |
| HindII | GTYRAC | 2 cut(s) | 471, 780 |
| HinfI | GANTC | 3 cut(s) | 242, 365, 485 |
| HpaII | CCGG | 4 cut(s) | 57, 98, 314, 775 |
| HphI | GGTGA | 3 cut(s) | 38, 413, 413 |
| Hpy166II | GTNNAC | 3 cut(s) | 227, 471, 780 |
| Hpy188I | TCNGA | 3 cut(s) | 186, 654, 726 |
| Hpy188III | TCNNGA | 2 cut(s) | 530, 601 |
| Hpy8I | GTNNAC | 3 cut(s) | 227, 471, 780 |
| Hpy99I | CGWCG | 3 cut(s) | 401, 518, 651 |
| HpyAV | CCTTC | 2 cut(s) | 610, 782 |
| HpyCH4III | ACNGT | 2 cut(s) | 130, 401 |
| HpyCH4IV | ACGT | 4 cut(s) | 513, 639, 649, 699 |
| HpyCH4V | TGCA | 1 cut(s) | 769 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 47, 103, 115, 164, 335, 380, 680 |
| HpyF3I | CTNAG | 1 cut(s) | 578 |
| HpySE526I | ACGT | 4 cut(s) | 513, 639, 649, 699 |
| Hsp92I | GRCGYC | 3 cut(s) | 167, 548, 649 |
| Hsp92II | CATG | 1 cut(s) | 533 |
| HspAI | GCGC | 4 cut(s) | 77, 109, 133, 167 |
| KasI | GGCGCC | 1 cut(s) | 166 |
| KroI | GCCGGC | 1 cut(s) | 97 |
| KroNI | GCCGGC | 1 cut(s) | 99 |
| Kzo9I | GATC | 1 cut(s) | 721 |
| LmnI | GCTCC | 3 cut(s) | 316, 574, 748 |
| Lsp1109I | GCAGC | 3 cut(s) | 21, 301, 568 |
| LweI | GCATC | 2 cut(s) | 661, 670 |
| MaeII | ACGT | 4 cut(s) | 513, 639, 649, 699 |
| MaeIII | GTNAC | 4 cut(s) | 148, 271, 537, 605 |
| MalI | GATC | 1 cut(s) | 723 |
| MbiI | CCGCTC | 4 cut(s) | 406, 433, 712, 733 |
| MboI | GATC | 1 cut(s) | 721 |
| MboII | GAAGA | 3 cut(s) | 133, 266, 307 |
| MhlI | GDGCHC | 3 cut(s) | 209, 283, 513 |
| MluCI | AATT | 2 cut(s) | 459, 799 |
| Mly113I | GGCGCC | 1 cut(s) | 167 |
| MlyI | GAGTC | 3 cut(s) | 236, 359, 494 |
| MroNI | GCCGGC | 1 cut(s) | 97 |
| MslI | CAYNNNNRTG | 1 cut(s) | 21 |
| MspI | CCGG | 4 cut(s) | 57, 98, 314, 775 |
| MspR9I | CCNGG | 5 cut(s) | 362, 452, 623, 685, 719 |
| MvaI | CCWGG | 5 cut(s) | 362, 452, 623, 685, 719 |
| MvnI | CGCG | 2 cut(s) | 111, 211 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 47, 103, 115, 164, 335, 380, 680 |
| NaeI | GCCGGC | 1 cut(s) | 99 |
| NarI | GGCGCC | 1 cut(s) | 167 |
| NdeII | GATC | 1 cut(s) | 721 |
| NgoMIV | GCCGGC | 1 cut(s) | 97 |
| NlaIII | CATG | 1 cut(s) | 533 |
| NlaIV | GGNNCC | 8 cut(s) | 55, 96, 168, 183, 280, 281, 312, 716 |
| NmeAIII | GCCGAG | 3 cut(s) | 105, 343, 409 |
| NmuCI | GTSAC | 1 cut(s) | 605 |
| PagI | TCATGA | 1 cut(s) | 529 |
| PceI | AGGCCT | 1 cut(s) | 190 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 182 |
| PdiI | GCCGGC | 1 cut(s) | 99 |
| PinAI | ACCGGT | 1 cut(s) | 774 |
| PleI | GAGTC | 3 cut(s) | 236, 359, 493 |
| PluTI | GGCGCC | 1 cut(s) | 170 |
| PpsI | GAGTC | 3 cut(s) | 236, 359, 493 |
| PshAI | GACNNNNGTC | 1 cut(s) | 476 |
| Psp1406I | AACGTT | 1 cut(s) | 699 |
| Psp6I | CCWGG | 5 cut(s) | 360, 450, 621, 683, 717 |
| PspFI | CCCAGC | 1 cut(s) | 436 |
| PspGI | CCWGG | 5 cut(s) | 360, 450, 621, 683, 717 |
| PspN4I | GGNNCC | 8 cut(s) | 55, 96, 168, 183, 280, 281, 312, 716 |
| PspOMI | GGGCCC | 1 cut(s) | 279 |
| PspPI | GGNCC | 7 cut(s) | 54, 182, 279, 280, 595, 619, 772 |
| PstNI | CAGNNNCTG | 1 cut(s) | 562 |
| RseI | CAYNNNNRTG | 1 cut(s) | 21 |
| SalI | GTCGAC | 1 cut(s) | 469 |
| Sau3AI | GATC | 1 cut(s) | 721 |
| Sau96I | GGNCC | 7 cut(s) | 54, 182, 279, 280, 595, 619, 772 |
| SchI | GAGTC | 3 cut(s) | 236, 359, 494 |
| ScrFI | CCNGG | 5 cut(s) | 362, 452, 623, 685, 719 |
| SduI | GDGCHC | 3 cut(s) | 209, 283, 513 |
| SfaNI | GCATC | 2 cut(s) | 661, 670 |
| SfoI | GGCGCC | 1 cut(s) | 168 |
| SinI | GGWCC | 3 cut(s) | 54, 182, 772 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 21 |
| Sse9I | AATT | 2 cut(s) | 459, 799 |
| SseBI | AGGCCT | 1 cut(s) | 190 |
| SspDI | GGCGCC | 1 cut(s) | 166 |
| StuI | AGGCCT | 1 cut(s) | 190 |
| StyD4I | CCNGG | 5 cut(s) | 360, 450, 621, 683, 717 |
| TaaI | ACNGT | 2 cut(s) | 130, 401 |
| TaiI | ACGT | 4 cut(s) | 516, 642, 652, 702 |
| TaqI | TCGA | 3 cut(s) | 302, 470, 786 |
| TaqII | GACCGA | 1 cut(s) | 456 |
| TasI | AATT | 2 cut(s) | 459, 799 |
| TauI | GCSGC | 7 cut(s) | 109, 234, 360, 436, 450, 677, 715 |
| TscAI | CASTG | 1 cut(s) | 253 |
| TseFI | GTSAC | 1 cut(s) | 605 |
| TseI | GCWGC | 3 cut(s) | 34, 289, 556 |
| Tsp45I | GTSAC | 1 cut(s) | 605 |
| TspDTI | ATGAA | 1 cut(s) | 518 |
| TspRI | CASTG | 1 cut(s) | 253 |
| VpaK11BI | GGWCC | 3 cut(s) | 54, 182, 772 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 17, 160, 559 |
| XmiI | GTMKAC | 1 cut(s) | 470 |
| ZraI | GACGTC | 1 cut(s) | 650 |