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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 2 cut(s) | 142, 640 |
| AatII | GACGTC | 1 cut(s) | 252 |
| Acc36I | ACCTGC | 1 cut(s) | 584 |
| Acc65I | GGTACC | 1 cut(s) | 719 |
| AccB1I | GGYRCC | 3 cut(s) | 467, 503, 719 |
| AccBSI | CCGCTC | 3 cut(s) | 214, 292, 343 |
| AccII | CGCG | 4 cut(s) | 155, 303, 395, 748 |
| AcoI | YGGCCR | 3 cut(s) | 222, 270, 396 |
| AcvI | CACGTG | 1 cut(s) | 683 |
| AcyI | GRCGYC | 4 cut(s) | 249, 468, 504, 524 |
| AfaI | GTAC | 3 cut(s) | 540, 598, 721 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 102, 593, 673 |
| AflII | CTTAAG | 1 cut(s) | 434 |
| AflIII | ACRYGT | 1 cut(s) | 301 |
| AgsI | TTSAA | 6 cut(s) | 38, 410, 418, 493, 794, 809 |
| AjnI | CCWGG | 2 cut(s) | 693, 759 |
| AleI | CACNNNNGTG | 1 cut(s) | 15 |
| AluBI | AGCT | 2 cut(s) | 262, 433 |
| AluI | AGCT | 2 cut(s) | 262, 433 |
| Alw26I | GTCTC | 4 cut(s) | 150, 190, 310, 722 |
| Ama87I | CYCGRG | 3 cut(s) | 471, 604, 708 |
| AoxI | GGCC | 5 cut(s) | 222, 270, 396, 474, 622 |
| ApeKI | GCWGC | 3 cut(s) | 334, 379, 609 |
| Asp718I | GGTACC | 1 cut(s) | 719 |
| AspLEI | GCGC | 4 cut(s) | 118, 470, 506, 748 |
| AspS9I | GGNCC | 6 cut(s) | 20, 93, 474, 623, 642, 753 |
| AsuC2I | CCSGG | 4 cut(s) | 472, 473, 709, 710 |
| AsuHPI | GGTGA | 1 cut(s) | 97 |
| AvaI | CYCGRG | 3 cut(s) | 471, 604, 708 |
| AvaII | GGWCC | 4 cut(s) | 20, 93, 642, 753 |
| BalI | TGGCCA | 2 cut(s) | 224, 272 |
| BanI | GGYRCC | 3 cut(s) | 467, 503, 719 |
| BbrPI | CACGTG | 1 cut(s) | 683 |
| BbvI | GCAGC | 3 cut(s) | 321, 391, 621 |
| BccI | CCATC | 2 cut(s) | 281, 710 |
| BceAI | ACGGC | 2 cut(s) | 153, 759 |
| BciT130I | CCWGG | 2 cut(s) | 695, 761 |
| BciVI | GTATCC | 1 cut(s) | 379 |
| BcnI | CCSGG | 4 cut(s) | 472, 473, 709, 710 |
| BcoDI | GTCTC | 4 cut(s) | 150, 190, 310, 722 |
| BfmI | CTRYAG | 1 cut(s) | 335 |
| BfoI | RGCGCY | 3 cut(s) | 119, 471, 507 |
| BfrI | CTTAAG | 1 cut(s) | 434 |
| BfuAI | ACCTGC | 1 cut(s) | 584 |
| BfuI | GTATCC | 1 cut(s) | 379 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 590 |
| Bme1390I | CCNGG | 6 cut(s) | 472, 473, 695, 709, 710, 761 |
| Bme18I | GGWCC | 4 cut(s) | 20, 93, 642, 753 |
| BmeT110I | CYCGRG | 3 cut(s) | 471, 604, 708 |
| BmgT120I | GGNCC | 6 cut(s) | 20, 93, 474, 623, 642, 753 |
| BmiI | GGNNCC | 8 cut(s) | 72, 107, 469, 505, 643, 644, 721, 754 |
| BmrFI | CCNGG | 6 cut(s) | 472, 473, 695, 709, 710, 761 |
| BoxI | GACNNNNGTC | 1 cut(s) | 572 |
| BpmI | CTGGAG | 2 cut(s) | 140, 716 |
| BpuMI | CCSGG | 4 cut(s) | 472, 473, 709, 710 |
| Bsa29I | ATCGAT | 1 cut(s) | 773 |
| BsaAI | YACGTR | 1 cut(s) | 683 |
| BsaHI | GRCGYC | 4 cut(s) | 249, 468, 504, 524 |
| BsaI | GGTCTC | 1 cut(s) | 722 |
| BsaJI | CCNNGG | 5 cut(s) | 225, 393, 450, 471, 708 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 59, 89 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 102, 593, 673 |
| Bse118I | RCCGGY | 2 cut(s) | 40, 544 |
| Bse1I | ACTGG | 1 cut(s) | 204 |
| BseBI | CCWGG | 2 cut(s) | 695, 761 |
| BseCI | ATCGAT | 1 cut(s) | 773 |
| BseDI | CCNNGG | 5 cut(s) | 225, 393, 450, 471, 708 |
| BseGI | GGATG | 1 cut(s) | 721 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 102, 593, 673 |
| BseMII | CTCAG | 2 cut(s) | 38, 132 |
| BseNI | ACTGG | 1 cut(s) | 204 |
| BseX3I | CGGCCG | 1 cut(s) | 396 |
| BseXI | GCAGC | 3 cut(s) | 321, 391, 621 |
| BseYI | CCCAGC | 4 cut(s) | 101, 586, 645, 734 |
| BsgI | GTGCAG | 1 cut(s) | 398 |
| Bsh1236I | CGCG | 4 cut(s) | 155, 303, 395, 748 |
| Bsh1285I | CGRYCG | 1 cut(s) | 399 |
| BshFI | GGCC | 5 cut(s) | 224, 272, 398, 476, 624 |
| BshNI | GGYRCC | 3 cut(s) | 467, 503, 719 |
| BshVI | ATCGAT | 1 cut(s) | 773 |
| BsiEI | CGRYCG | 1 cut(s) | 399 |
| BsiHKCI | CYCGRG | 3 cut(s) | 471, 604, 708 |
| BsiSI | CCGG | 5 cut(s) | 41, 472, 545, 687, 709 |
| BslFI | GGGAC | 1 cut(s) | 628 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 102, 593, 673 |
| BsmAI | GTCTC | 4 cut(s) | 150, 190, 310, 722 |
| BsmBI | CGTCTC | 1 cut(s) | 310 |
| BsmFI | GGGAC | 1 cut(s) | 628 |
| BsmI | GAATGC | 1 cut(s) | 559 |
| BsnI | GGCC | 5 cut(s) | 224, 272, 398, 476, 624 |
| Bso31I | GGTCTC | 1 cut(s) | 722 |
| BsoBI | CYCGRG | 3 cut(s) | 471, 604, 708 |
| Bsp143I | GATC | 2 cut(s) | 324, 770 |
| BspANI | GGCC | 5 cut(s) | 224, 272, 398, 476, 624 |
| BspCNI | CTCAG | 2 cut(s) | 37, 133 |
| BspDI | ATCGAT | 1 cut(s) | 773 |
| BspFNI | CGCG | 4 cut(s) | 155, 303, 395, 748 |
| BspLI | GGNNCC | 8 cut(s) | 72, 107, 469, 505, 643, 644, 721, 754 |
| BspMAI | CTGCAG | 1 cut(s) | 339 |
| BspMI | ACCTGC | 1 cut(s) | 584 |
| BspT107I | GGYRCC | 3 cut(s) | 467, 503, 719 |
| BspTI | CTTAAG | 1 cut(s) | 434 |
| BspTNI | GGTCTC | 1 cut(s) | 722 |
| BsrBI | CCGCTC | 3 cut(s) | 214, 292, 343 |
| BsrFI | RCCGGY | 2 cut(s) | 40, 544 |
| BsrI | ACTGG | 1 cut(s) | 204 |
| BssAI | RCCGGY | 2 cut(s) | 40, 544 |
| BssECI | CCNNGG | 5 cut(s) | 225, 393, 450, 471, 708 |
| BssMI | GATC | 2 cut(s) | 324, 770 |
| BssNI | GRCGYC | 4 cut(s) | 249, 468, 504, 524 |
| BssT1I | CCWWGG | 1 cut(s) | 225 |
| Bst2UI | CCWGG | 2 cut(s) | 695, 761 |
| Bst4CI | ACNGT | 1 cut(s) | 75 |
| Bst6I | CTCTTC | 1 cut(s) | 153 |
| BstACI | GRCGYC | 4 cut(s) | 249, 468, 504, 524 |
| BstAFI | CTTAAG | 1 cut(s) | 434 |
| BstBAI | YACGTR | 1 cut(s) | 683 |
| BstC8I | GCNNGC | 6 cut(s) | 6, 222, 260, 466, 564, 582 |
| BstDEI | CTNAG | 3 cut(s) | 24, 141, 309 |
| BstDSI | CCRYGG | 1 cut(s) | 393 |
| BstF5I | GGATG | 1 cut(s) | 721 |
| BstFNI | CGCG | 4 cut(s) | 155, 303, 395, 748 |
| BstH2I | RGCGCY | 3 cut(s) | 119, 471, 507 |
| BstHHI | GCGC | 4 cut(s) | 118, 470, 506, 748 |
| BstKTI | GATC | 2 cut(s) | 327, 773 |
| BstMAI | GTCTC | 4 cut(s) | 150, 190, 310, 722 |
| BstMBI | GATC | 2 cut(s) | 324, 770 |
| BstMCI | CGRYCG | 1 cut(s) | 399 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 340, 398, 401, 410, 461, 563, 590 |
| BstNI | CCWGG | 2 cut(s) | 695, 761 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 572 |
| BstSCI | CCNGG | 6 cut(s) | 470, 471, 693, 707, 708, 759 |
| BstSFI | CTRYAG | 1 cut(s) | 335 |
| BstUI | CGCG | 4 cut(s) | 155, 303, 395, 748 |
| BstV1I | GCAGC | 3 cut(s) | 321, 391, 621 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 17 |
| BstZI | CGGCCG | 1 cut(s) | 396 |
| Bsu15I | ATCGAT | 1 cut(s) | 773 |
| BsuI | GTATCC | 1 cut(s) | 379 |
| BsuRI | GGCC | 5 cut(s) | 224, 272, 398, 476, 624 |
| BsuTUI | ATCGAT | 1 cut(s) | 773 |
| BtgI | CCRYGG | 1 cut(s) | 393 |
| BtsCI | GGATG | 1 cut(s) | 721 |
| BtsI | GCAGTG | 1 cut(s) | 329 |
| BtsIMutI | CAGTG | 3 cut(s) | 84, 329, 443 |
| BveI | ACCTGC | 1 cut(s) | 584 |
| Cac8I | GCNNGC | 6 cut(s) | 6, 222, 260, 466, 564, 582 |
| CciNI | GCGGCCGC | 1 cut(s) | 396 |
| CfoI | GCGC | 4 cut(s) | 118, 470, 506, 748 |
| Cfr10I | RCCGGY | 2 cut(s) | 40, 544 |
| Cfr13I | GGNCC | 6 cut(s) | 20, 93, 474, 623, 642, 753 |
| Cfr42I | CCGCGG | 1 cut(s) | 396 |
| Cfr9I | CCCGGG | 2 cut(s) | 471, 708 |
| ClaI | ATCGAT | 1 cut(s) | 773 |
| CseI | GACGC | 4 cut(s) | 119, 161, 292, 513 |
| Csp6I | GTAC | 3 cut(s) | 539, 597, 720 |
| CviQI | GTAC | 3 cut(s) | 539, 597, 720 |
| DdeI | CTNAG | 3 cut(s) | 24, 141, 309 |
| DinI | GGCGCC | 2 cut(s) | 469, 505 |
| DpnI | GATC | 2 cut(s) | 326, 772 |
| DpnII | GATC | 2 cut(s) | 324, 770 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 142, 640 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 142, 640 |
| EaeI | YGGCCR | 3 cut(s) | 222, 270, 396 |
| EagI | CGGCCG | 1 cut(s) | 396 |
| Eam1104I | CTCTTC | 1 cut(s) | 153 |
| EarI | CTCTTC | 1 cut(s) | 153 |
| EciI | GGCGGA | 5 cut(s) | 59, 197, 218, 245, 728 |
| EclXI | CGGCCG | 1 cut(s) | 396 |
| Eco130I | CCWWGG | 1 cut(s) | 225 |
| Eco31I | GGTCTC | 1 cut(s) | 722 |
| Eco47I | GGWCC | 4 cut(s) | 20, 93, 642, 753 |
| Eco52I | CGGCCG | 1 cut(s) | 396 |
| Eco72I | CACGTG | 1 cut(s) | 683 |
| Eco88I | CYCGRG | 3 cut(s) | 471, 604, 708 |
| EcoO109I | RGGNCCY | 1 cut(s) | 642 |
| EcoRII | CCWGG | 2 cut(s) | 693, 759 |
| EcoT14I | CCWWGG | 1 cut(s) | 225 |
| EgeI | GGCGCC | 2 cut(s) | 469, 505 |
| EheI | GGCGCC | 2 cut(s) | 469, 505 |
| ErhI | CCWWGG | 1 cut(s) | 225 |
| Esp3I | CGTCTC | 1 cut(s) | 310 |
| FaiI | YATR | 5 cut(s) | 243, 374, 482, 488, 725 |
| FaqI | GGGAC | 1 cut(s) | 628 |
| FauI | CCCGC | 4 cut(s) | 207, 375, 567, 605 |
| FokI | GGATG | 1 cut(s) | 728 |
| GlaI | GCGC | 4 cut(s) | 117, 469, 505, 747 |
| GsaI | CCCAGC | 4 cut(s) | 105, 590, 649, 738 |
| GsuI | CTGGAG | 2 cut(s) | 140, 716 |
| HaeII | RGCGCY | 3 cut(s) | 119, 471, 507 |
| HaeIII | GGCC | 5 cut(s) | 224, 272, 398, 476, 624 |
| HapII | CCGG | 5 cut(s) | 41, 472, 545, 687, 709 |
| HgaI | GACGC | 4 cut(s) | 119, 161, 292, 513 |
| HhaI | GCGC | 4 cut(s) | 118, 470, 506, 748 |
| Hin1I | GRCGYC | 4 cut(s) | 249, 468, 504, 524 |
| Hin6I | GCGC | 4 cut(s) | 116, 468, 504, 746 |
| HinP1I | GCGC | 4 cut(s) | 116, 468, 504, 746 |
| HinfI | GANTC | 3 cut(s) | 143, 652, 690 |
| HpaII | CCGG | 5 cut(s) | 41, 472, 545, 687, 709 |
| HphI | GGTGA | 1 cut(s) | 97 |
| Hpy188I | TCNGA | 5 cut(s) | 27, 135, 633, 673, 757 |
| Hpy188III | TCNNGA | 1 cut(s) | 149 |
| Hpy99I | CGWCG | 3 cut(s) | 135, 673, 745 |
| HpyAV | CCTTC | 4 cut(s) | 22, 493, 514, 632 |
| HpyCH4III | ACNGT | 1 cut(s) | 75 |
| HpyCH4IV | ACGT | 4 cut(s) | 249, 537, 682, 804 |
| HpyCH4V | TGCA | 3 cut(s) | 245, 337, 379 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 340, 398, 401, 410, 461, 563, 590 |
| HpyF3I | CTNAG | 3 cut(s) | 24, 141, 309 |
| HpySE526I | ACGT | 4 cut(s) | 249, 537, 682, 804 |
| Hsp92I | GRCGYC | 4 cut(s) | 249, 468, 504, 524 |
| HspAI | GCGC | 4 cut(s) | 116, 468, 504, 746 |
| KasI | GGCGCC | 2 cut(s) | 467, 503 |
| KflI | GGGWCCC | 1 cut(s) | 642 |
| KpnI | GGTACC | 1 cut(s) | 723 |
| KspI | CCGCGG | 1 cut(s) | 396 |
| Kzo9I | GATC | 2 cut(s) | 324, 770 |
| LmnI | GCTCC | 3 cut(s) | 289, 316, 340 |
| Lsp1109I | GCAGC | 3 cut(s) | 321, 391, 621 |
| MaeII | ACGT | 4 cut(s) | 249, 537, 682, 804 |
| MaeIII | GTNAC | 6 cut(s) | 58, 85, 236, 281, 525, 678 |
| MalI | GATC | 2 cut(s) | 326, 772 |
| MbiI | CCGCTC | 3 cut(s) | 214, 292, 343 |
| MboI | GATC | 2 cut(s) | 324, 770 |
| MboII | GAAGA | 2 cut(s) | 59, 170 |
| MlsI | TGGCCA | 2 cut(s) | 224, 272 |
| MluI | ACGCGT | 1 cut(s) | 301 |
| MluNI | TGGCCA | 2 cut(s) | 224, 272 |
| Mly113I | GGCGCC | 2 cut(s) | 468, 504 |
| MlyI | GAGTC | 2 cut(s) | 152, 646 |
| MmeI | TCCRAC | 4 cut(s) | 113, 294, 651, 780 |
| Mox20I | TGGCCA | 2 cut(s) | 224, 272 |
| MscI | TGGCCA | 2 cut(s) | 224, 272 |
| MseI | TTAA | 1 cut(s) | 435 |
| MslI | CAYNNNNRTG | 2 cut(s) | 15, 374 |
| Msp20I | TGGCCA | 2 cut(s) | 224, 272 |
| MspA1I | CMGCKG | 7 cut(s) | 101, 255, 382, 395, 404, 590, 612 |
| MspCI | CTTAAG | 1 cut(s) | 434 |
| MspI | CCGG | 5 cut(s) | 41, 472, 545, 687, 709 |
| MspR9I | CCNGG | 6 cut(s) | 472, 473, 695, 709, 710, 761 |
| Mva1269I | GAATGC | 1 cut(s) | 559 |
| MvaI | CCWGG | 2 cut(s) | 695, 761 |
| MvnI | CGCG | 4 cut(s) | 155, 303, 395, 748 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 340, 398, 401, 410, 461, 563, 590 |
| NarI | GGCGCC | 2 cut(s) | 468, 504 |
| NciI | CCSGG | 4 cut(s) | 472, 473, 709, 710 |
| NdeII | GATC | 2 cut(s) | 324, 770 |
| NlaIV | GGNNCC | 8 cut(s) | 72, 107, 469, 505, 643, 644, 721, 754 |
| NmuCI | GTSAC | 6 cut(s) | 58, 85, 236, 281, 525, 678 |
| NotI | GCGGCCGC | 1 cut(s) | 396 |
| OliI | CACNNNNGTG | 1 cut(s) | 15 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 447 |
| PctI | GAATGC | 1 cut(s) | 559 |
| PfeI | GAWTC | 1 cut(s) | 690 |
| PflFI | GACNNNGTC | 1 cut(s) | 667 |
| PfoI | TCCNGGA | 1 cut(s) | 693 |
| PleI | GAGTC | 2 cut(s) | 151, 646 |
| PluTI | GGCGCC | 2 cut(s) | 471, 507 |
| PmaCI | CACGTG | 1 cut(s) | 683 |
| PmlI | CACGTG | 1 cut(s) | 683 |
| PpsI | GAGTC | 2 cut(s) | 151, 646 |
| Ppu21I | YACGTR | 1 cut(s) | 683 |
| PpuMI | RGGWCCY | 1 cut(s) | 642 |
| PshAI | GACNNNNGTC | 1 cut(s) | 572 |
| Psp5II | RGGWCCY | 1 cut(s) | 642 |
| Psp6I | CCWGG | 2 cut(s) | 693, 759 |
| PspCI | CACGTG | 1 cut(s) | 683 |
| PspFI | CCCAGC | 4 cut(s) | 101, 586, 645, 734 |
| PspGI | CCWGG | 2 cut(s) | 693, 759 |
| PspN4I | GGNNCC | 8 cut(s) | 72, 107, 469, 505, 643, 644, 721, 754 |
| PspPI | GGNCC | 6 cut(s) | 20, 93, 474, 623, 642, 753 |
| PspPPI | RGGWCCY | 1 cut(s) | 642 |
| PstI | CTGCAG | 1 cut(s) | 339 |
| PsyI | GACNNNGTC | 1 cut(s) | 667 |
| RsaI | GTAC | 3 cut(s) | 540, 598, 721 |
| RsaNI | GTAC | 3 cut(s) | 539, 597, 720 |
| RseI | CAYNNNNRTG | 2 cut(s) | 15, 374 |
| SacII | CCGCGG | 1 cut(s) | 396 |
| SaqAI | TTAA | 1 cut(s) | 435 |
| Sau3AI | GATC | 2 cut(s) | 324, 770 |
| Sau96I | GGNCC | 6 cut(s) | 20, 93, 474, 623, 642, 753 |
| SchI | GAGTC | 2 cut(s) | 152, 646 |
| ScrFI | CCNGG | 6 cut(s) | 472, 473, 695, 709, 710, 761 |
| SfcI | CTRYAG | 1 cut(s) | 335 |
| SfoI | GGCGCC | 2 cut(s) | 469, 505 |
| Sfr303I | CCGCGG | 1 cut(s) | 396 |
| SgrBI | CCGCGG | 1 cut(s) | 396 |
| SinI | GGWCC | 4 cut(s) | 20, 93, 642, 753 |
| SmaI | CCCGGG | 2 cut(s) | 473, 710 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 15, 374 |
| SmlI | CTYRAG | 1 cut(s) | 434 |
| SmoI | CTYRAG | 1 cut(s) | 434 |
| SrfI | GCCCGGGC | 1 cut(s) | 473 |
| SspDI | GGCGCC | 2 cut(s) | 467, 503 |
| StyD4I | CCNGG | 6 cut(s) | 470, 471, 693, 707, 708, 759 |
| StyI | CCWWGG | 1 cut(s) | 225 |
| TaaI | ACNGT | 1 cut(s) | 75 |
| TaiI | ACGT | 4 cut(s) | 252, 540, 685, 807 |
| TaqI | TCGA | 2 cut(s) | 210, 773 |
| TaqII | GACCGA | 1 cut(s) | 464 |
| TfiI | GAWTC | 1 cut(s) | 690 |
| Tru1I | TTAA | 1 cut(s) | 435 |
| Tru9I | TTAA | 1 cut(s) | 435 |
| TscAI | CASTG | 3 cut(s) | 84, 336, 450 |
| TseFI | GTSAC | 6 cut(s) | 58, 85, 236, 281, 525, 678 |
| TseI | GCWGC | 3 cut(s) | 334, 379, 609 |
| Tsp45I | GTSAC | 6 cut(s) | 58, 85, 236, 281, 525, 678 |
| TspDTI | ATGAA | 1 cut(s) | 312 |
| TspGWI | ACGGA | 1 cut(s) | 650 |
| TspMI | CCCGGG | 2 cut(s) | 471, 708 |
| TspRI | CASTG | 3 cut(s) | 84, 336, 450 |
| Tth111I | GACNNNGTC | 1 cut(s) | 667 |
| Vha464I | CTTAAG | 1 cut(s) | 434 |
| VpaK11BI | GGWCC | 4 cut(s) | 20, 93, 642, 753 |
| XmaI | CCCGGG | 2 cut(s) | 471, 708 |
| ZraI | GACGTC | 1 cut(s) | 250 |