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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 3 cut(s) | 84, 404, 440 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 450 |
| AccBSI | CCGCTC | 3 cut(s) | 7, 82, 160 |
| AccI | GTMKAC | 1 cut(s) | 144 |
| AccII | CGCG | 1 cut(s) | 123 |
| AclWI | GGATC | 3 cut(s) | 19, 216, 235 |
| AcuI | CTGAAG | 2 cut(s) | 224, 336 |
| AcyI | GRCGYC | 1 cut(s) | 461 |
| AfaI | GTAC | 1 cut(s) | 328 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 94, 154, 205, 250, 331, 450 |
| AgsI | TTSAA | 2 cut(s) | 355, 430 |
| AjnI | CCWGG | 1 cut(s) | 27 |
| AluBI | AGCT | 5 cut(s) | 13, 130, 181, 202, 314 |
| AluI | AGCT | 5 cut(s) | 13, 130, 181, 202, 314 |
| Alw21I | GWGCWC | 1 cut(s) | 15 |
| Alw26I | GTCTC | 2 cut(s) | 38, 144 |
| AlwI | GGATC | 3 cut(s) | 19, 216, 235 |
| ApeKI | GCWGC | 3 cut(s) | 110, 260, 335 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 350 |
| AspLEI | GCGC | 1 cut(s) | 382 |
| AsuHPI | GGTGA | 2 cut(s) | 289, 305 |
| AsuNHI | GCTAGC | 1 cut(s) | 67 |
| BaeGI | GKGCMC | 1 cut(s) | 443 |
| BanI | GGYRCC | 3 cut(s) | 84, 404, 440 |
| BanII | GRGCYC | 1 cut(s) | 15 |
| Bbv12I | GWGCWC | 1 cut(s) | 15 |
| BbvI | GCAGC | 3 cut(s) | 97, 247, 322 |
| BccI | CCATC | 1 cut(s) | 452 |
| BceAI | ACGGC | 3 cut(s) | 125, 309, 392 |
| BciT130I | CCWGG | 1 cut(s) | 29 |
| BcoDI | GTCTC | 2 cut(s) | 38, 144 |
| BfaI | CTAG | 2 cut(s) | 68, 264 |
| BfmI | CTRYAG | 1 cut(s) | 245 |
| BfoI | RGCGCY | 1 cut(s) | 383 |
| BisI | GCNGC | 7 cut(s) | 111, 124, 261, 333, 336, 339, 393 |
| BlsI | GCNGC | 7 cut(s) | 112, 125, 262, 334, 337, 340, 394 |
| Bme1390I | CCNGG | 1 cut(s) | 29 |
| BmiI | GGNNCC | 4 cut(s) | 86, 323, 406, 442 |
| BmrFI | CCNGG | 1 cut(s) | 29 |
| BmrI | ACTGGG | 1 cut(s) | 460 |
| BmsI | GCATC | 2 cut(s) | 97, 106 |
| BmtI | GCTAGC | 1 cut(s) | 71 |
| BmuI | ACTGGG | 1 cut(s) | 460 |
| BpmI | CTGGAG | 1 cut(s) | 203 |
| Bpu10I | CCTNAGC | 2 cut(s) | 14, 57 |
| BsaHI | GRCGYC | 1 cut(s) | 461 |
| BsaI | GGTCTC | 1 cut(s) | 38 |
| BsaJI | CCNNGG | 4 cut(s) | 28, 93, 222, 273 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 94, 154, 205, 250, 331, 450 |
| Bse1I | ACTGG | 1 cut(s) | 455 |
| BseBI | CCWGG | 1 cut(s) | 29 |
| BseDI | CCNNGG | 4 cut(s) | 28, 93, 222, 273 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 94, 154, 205, 250, 331, 450 |
| BseMII | CTCAG | 1 cut(s) | 28 |
| BseNI | ACTGG | 1 cut(s) | 455 |
| BseSI | GKGCMC | 1 cut(s) | 443 |
| BseXI | GCAGC | 3 cut(s) | 97, 247, 322 |
| BseYI | CCCAGC | 1 cut(s) | 198 |
| Bsh1236I | CGCG | 1 cut(s) | 123 |
| Bsh1285I | CGRYCG | 2 cut(s) | 138, 148 |
| BshNI | GGYRCC | 3 cut(s) | 84, 404, 440 |
| BsiEI | CGRYCG | 2 cut(s) | 138, 148 |
| BsiHKAI | GWGCWC | 1 cut(s) | 15 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 94, 154, 205, 250, 331, 450 |
| BsmAI | GTCTC | 2 cut(s) | 38, 144 |
| BsmI | GAATGC | 1 cut(s) | 350 |
| Bso31I | GGTCTC | 1 cut(s) | 38 |
| Bsp1286I | GDGCHC | 2 cut(s) | 15, 443 |
| Bsp143I | GATC | 3 cut(s) | 24, 208, 240 |
| BspCNI | CTCAG | 1 cut(s) | 27 |
| BspFNI | CGCG | 1 cut(s) | 123 |
| BspLI | GGNNCC | 4 cut(s) | 86, 323, 406, 442 |
| BspOI | GCTAGC | 1 cut(s) | 71 |
| BspPI | GGATC | 3 cut(s) | 19, 216, 235 |
| BspT107I | GGYRCC | 3 cut(s) | 84, 404, 440 |
| BspTNI | GGTCTC | 1 cut(s) | 38 |
| BsrBI | CCGCTC | 3 cut(s) | 7, 82, 160 |
| BsrI | ACTGG | 1 cut(s) | 455 |
| BssECI | CCNNGG | 4 cut(s) | 28, 93, 222, 273 |
| BssMI | GATC | 3 cut(s) | 24, 208, 240 |
| BssNI | GRCGYC | 1 cut(s) | 461 |
| BssT1I | CCWWGG | 2 cut(s) | 93, 222 |
| Bst2UI | CCWGG | 1 cut(s) | 29 |
| Bst6I | CTCTTC | 1 cut(s) | 15 |
| BstACI | GRCGYC | 1 cut(s) | 461 |
| BstC8I | GCNNGC | 6 cut(s) | 69, 121, 128, 132, 179, 216 |
| BstDEI | CTNAG | 2 cut(s) | 14, 57 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 92 |
| BstFNI | CGCG | 1 cut(s) | 123 |
| BstH2I | RGCGCY | 1 cut(s) | 383 |
| BstHHI | GCGC | 1 cut(s) | 382 |
| BstKTI | GATC | 3 cut(s) | 27, 211, 243 |
| BstMAI | GTCTC | 2 cut(s) | 38, 144 |
| BstMBI | GATC | 3 cut(s) | 24, 208, 240 |
| BstMCI | CGRYCG | 2 cut(s) | 138, 148 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 116, 338, 347, 398 |
| BstNI | CCWGG | 1 cut(s) | 29 |
| BstSCI | CCNGG | 1 cut(s) | 27 |
| BstSFI | CTRYAG | 1 cut(s) | 245 |
| BstSLI | GKGCMC | 1 cut(s) | 443 |
| BstUI | CGCG | 1 cut(s) | 123 |
| BstV1I | GCAGC | 3 cut(s) | 97, 247, 322 |
| BstX2I | RGATCY | 2 cut(s) | 24, 240 |
| BstYI | RGATCY | 2 cut(s) | 24, 240 |
| BtgZI | GCGATG | 1 cut(s) | 120 |
| Cac8I | GCNNGC | 6 cut(s) | 69, 121, 128, 132, 179, 216 |
| CfoI | GCGC | 1 cut(s) | 382 |
| CseI | GACGC | 1 cut(s) | 450 |
| Csp6I | GTAC | 1 cut(s) | 327 |
| CviQI | GTAC | 1 cut(s) | 327 |
| DdeI | CTNAG | 2 cut(s) | 14, 57 |
| DpnI | GATC | 3 cut(s) | 26, 210, 242 |
| DpnII | GATC | 3 cut(s) | 24, 208, 240 |
| Eam1104I | CTCTTC | 1 cut(s) | 15 |
| EarI | CTCTTC | 1 cut(s) | 15 |
| EciI | GGCGGA | 2 cut(s) | 113, 380 |
| Ecl136II | GAGCTC | 1 cut(s) | 13 |
| Eco130I | CCWWGG | 2 cut(s) | 93, 222 |
| Eco24I | GRGCYC | 1 cut(s) | 15 |
| Eco31I | GGTCTC | 1 cut(s) | 38 |
| Eco53kI | GAGCTC | 1 cut(s) | 13 |
| Eco57I | CTGAAG | 2 cut(s) | 224, 336 |
| EcoICRI | GAGCTC | 1 cut(s) | 13 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 92 |
| EcoRII | CCWGG | 1 cut(s) | 27 |
| EcoT14I | CCWWGG | 2 cut(s) | 93, 222 |
| EcoT38I | GRGCYC | 1 cut(s) | 15 |
| ErhI | CCWWGG | 2 cut(s) | 93, 222 |
| FaiI | YATR | 2 cut(s) | 194, 372 |
| FauI | CCCGC | 1 cut(s) | 243 |
| FblI | GTMKAC | 1 cut(s) | 144 |
| Fnu4HI | GCNGC | 7 cut(s) | 111, 124, 261, 333, 336, 339, 393 |
| FriOI | GRGCYC | 1 cut(s) | 15 |
| Fsp4HI | GCNGC | 7 cut(s) | 111, 124, 261, 333, 336, 339, 393 |
| FspBI | CTAG | 2 cut(s) | 68, 264 |
| GlaI | GCGC | 1 cut(s) | 381 |
| GluI | GCNGC | 7 cut(s) | 111, 124, 261, 333, 336, 339, 393 |
| GsaI | CCCAGC | 1 cut(s) | 202 |
| GsuI | CTGGAG | 1 cut(s) | 203 |
| HaeII | RGCGCY | 1 cut(s) | 383 |
| HgaI | GACGC | 1 cut(s) | 450 |
| HhaI | GCGC | 1 cut(s) | 382 |
| Hin1I | GRCGYC | 1 cut(s) | 461 |
| Hin6I | GCGC | 1 cut(s) | 380 |
| HinP1I | GCGC | 1 cut(s) | 380 |
| HincII | GTYRAC | 1 cut(s) | 145 |
| HindII | GTYRAC | 1 cut(s) | 145 |
| HinfI | GANTC | 1 cut(s) | 254 |
| HphI | GGTGA | 2 cut(s) | 289, 305 |
| Hpy166II | GTNNAC | 1 cut(s) | 145 |
| Hpy8I | GTNNAC | 1 cut(s) | 145 |
| Hpy99I | CGWCG | 2 cut(s) | 146, 413 |
| HpyAV | CCTTC | 6 cut(s) | 199, 311, 340, 370, 391, 430 |
| HpyCH4IV | ACGT | 1 cut(s) | 171 |
| HpyCH4V | TGCA | 1 cut(s) | 177 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 116, 338, 347, 398 |
| HpyF3I | CTNAG | 2 cut(s) | 14, 57 |
| HpySE526I | ACGT | 1 cut(s) | 171 |
| Hsp92I | GRCGYC | 1 cut(s) | 461 |
| HspAI | GCGC | 1 cut(s) | 380 |
| Kzo9I | GATC | 3 cut(s) | 24, 208, 240 |
| LmnI | GCTCC | 6 cut(s) | 10, 79, 157, 184, 311, 321 |
| Lsp1109I | GCAGC | 3 cut(s) | 97, 247, 322 |
| LweI | GCATC | 2 cut(s) | 97, 106 |
| MaeI | CTAG | 2 cut(s) | 68, 264 |
| MaeII | ACGT | 1 cut(s) | 171 |
| MalI | GATC | 3 cut(s) | 26, 210, 242 |
| MbiI | CCGCTC | 3 cut(s) | 7, 82, 160 |
| MboI | GATC | 3 cut(s) | 24, 208, 240 |
| MboII | GAAGA | 1 cut(s) | 32 |
| MflI | RGATCY | 2 cut(s) | 24, 240 |
| MhlI | GDGCHC | 2 cut(s) | 15, 443 |
| MlyI | GAGTC | 1 cut(s) | 263 |
| MmeI | TCCRAC | 1 cut(s) | 267 |
| MnlI | CCTC | 5 cut(s) | 46, 268, 283, 289, 382 |
| MroXI | GAANNNNTTC | 1 cut(s) | 350 |
| MspA1I | CMGCKG | 3 cut(s) | 202, 250, 341 |
| MspR9I | CCNGG | 1 cut(s) | 29 |
| Mva1269I | GAATGC | 1 cut(s) | 350 |
| MvaI | CCWGG | 1 cut(s) | 29 |
| MvnI | CGCG | 1 cut(s) | 123 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 116, 338, 347, 398 |
| NdeII | GATC | 3 cut(s) | 24, 208, 240 |
| NheI | GCTAGC | 1 cut(s) | 67 |
| NlaIV | GGNNCC | 4 cut(s) | 86, 323, 406, 442 |
| PctI | GAATGC | 1 cut(s) | 350 |
| PdmI | GAANNNNTTC | 1 cut(s) | 350 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 450 |
| PkrI | GCNGC | 7 cut(s) | 112, 125, 262, 334, 337, 340, 394 |
| PleI | GAGTC | 1 cut(s) | 262 |
| PpsI | GAGTC | 1 cut(s) | 262 |
| Psp124BI | GAGCTC | 1 cut(s) | 15 |
| Psp6I | CCWGG | 1 cut(s) | 27 |
| PspFI | CCCAGC | 1 cut(s) | 198 |
| PspGI | CCWGG | 1 cut(s) | 27 |
| PspN4I | GGNNCC | 4 cut(s) | 86, 323, 406, 442 |
| PsuI | RGATCY | 2 cut(s) | 24, 240 |
| PvuII | CAGCTG | 1 cut(s) | 202 |
| RsaI | GTAC | 1 cut(s) | 328 |
| RsaNI | GTAC | 1 cut(s) | 327 |
| SacI | GAGCTC | 1 cut(s) | 15 |
| SalI | GTCGAC | 1 cut(s) | 143 |
| SatI | GCNGC | 7 cut(s) | 111, 124, 261, 333, 336, 339, 393 |
| Sau3AI | GATC | 3 cut(s) | 24, 208, 240 |
| SchI | GAGTC | 1 cut(s) | 263 |
| ScrFI | CCNGG | 1 cut(s) | 29 |
| SduI | GDGCHC | 2 cut(s) | 15, 443 |
| SetI | ASST | 9 cut(s) | 15, 132, 174, 183, 204, 237, 279, 300, 316 |
| SfaNI | GCATC | 2 cut(s) | 97, 106 |
| SfcI | CTRYAG | 1 cut(s) | 245 |
| SspMI | CTAG | 2 cut(s) | 68, 264 |
| SstI | GAGCTC | 1 cut(s) | 15 |
| StyD4I | CCNGG | 1 cut(s) | 27 |
| StyI | CCWWGG | 2 cut(s) | 93, 222 |
| TaiI | ACGT | 1 cut(s) | 174 |
| TaqI | TCGA | 2 cut(s) | 144, 447 |
| TaqII | GACCGA | 1 cut(s) | 162 |
| TauI | GCSGC | 4 cut(s) | 126, 335, 341, 395 |
| TseI | GCWGC | 3 cut(s) | 110, 260, 335 |
| TspGWI | ACGGA | 1 cut(s) | 92 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 450 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 92 |
| XmiI | GTMKAC | 1 cut(s) | 144 |
| XmnI | GAANNNNTTC | 1 cut(s) | 350 |
| XspI | CTAG | 2 cut(s) | 68, 264 |