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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 850 |
| Acc36I | ACCTGC | 2 cut(s) | 66, 850 |
| AccB1I | GGYRCC | 1 cut(s) | 1022 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 217, 1032 |
| AccBSI | CCGCTC | 2 cut(s) | 422, 730 |
| AccI | GTMKAC | 2 cut(s) | 204, 885 |
| AccII | CGCG | 5 cut(s) | 6, 111, 138, 336, 771 |
| AclWI | GGATC | 2 cut(s) | 141, 551 |
| AcuI | CTGAAG | 3 cut(s) | 668, 872, 878 |
| AfaI | GTAC | 3 cut(s) | 170, 412, 964 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 217, 235, 324, 898, 1032 |
| AflII | CTTAAG | 1 cut(s) | 391 |
| AgsI | TTSAA | 4 cut(s) | 570, 636, 677, 1012 |
| AjnI | CCWGG | 1 cut(s) | 624 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 605, 637 |
| AluBI | AGCT | 6 cut(s) | 128, 311, 586, 619, 778, 925 |
| AluI | AGCT | 6 cut(s) | 128, 311, 586, 619, 778, 925 |
| Alw21I | GWGCWC | 1 cut(s) | 1061 |
| AlwI | GGATC | 2 cut(s) | 141, 551 |
| AoxI | GGCC | 7 cut(s) | 186, 277, 494, 521, 648, 708, 915 |
| ApaI | GGGCCC | 1 cut(s) | 498 |
| ApeKI | GCWGC | 4 cut(s) | 250, 992, 995, 1081 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 681 |
| AspLEI | GCGC | 3 cut(s) | 6, 140, 336 |
| AspS9I | GGNCC | 5 cut(s) | 187, 278, 494, 495, 551 |
| AsuHPI | GGTGA | 2 cut(s) | 70, 1048 |
| AvaII | GGWCC | 1 cut(s) | 551 |
| AxyI | CCTNAGG | 1 cut(s) | 645 |
| BaeGI | GKGCMC | 2 cut(s) | 498, 1025 |
| BanI | GGYRCC | 1 cut(s) | 1022 |
| BanII | GRGCYC | 1 cut(s) | 498 |
| BbsI | GAAGAC | 2 cut(s) | 517, 674 |
| Bbv12I | GWGCWC | 1 cut(s) | 1061 |
| BbvI | GCAGC | 3 cut(s) | 237, 979, 982 |
| BccI | CCATC | 3 cut(s) | 78, 533, 542 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 101, 135 |
| BciT130I | CCWGG | 1 cut(s) | 626 |
| BfmI | CTRYAG | 1 cut(s) | 414 |
| BfrI | CTTAAG | 1 cut(s) | 391 |
| BfuAI | ACCTGC | 2 cut(s) | 66, 850 |
| Bme1390I | CCNGG | 1 cut(s) | 626 |
| Bme18I | GGWCC | 1 cut(s) | 551 |
| BmgT120I | GGNCC | 5 cut(s) | 187, 278, 494, 495, 551 |
| BmiI | GGNNCC | 6 cut(s) | 240, 316, 378, 437, 496, 1024 |
| BmrFI | CCNGG | 1 cut(s) | 626 |
| BmrI | ACTGGG | 1 cut(s) | 1042 |
| BmsI | GCATC | 4 cut(s) | 280, 691, 754, 1052 |
| BmuI | ACTGGG | 1 cut(s) | 1042 |
| BpiI | GAAGAC | 2 cut(s) | 517, 674 |
| BpmI | CTGGAG | 4 cut(s) | 203, 225, 333, 992 |
| Bpu10I | CCTNAGC | 2 cut(s) | 705, 870 |
| BpuEI | CTTGAG | 1 cut(s) | 851 |
| Bsa29I | ATCGAT | 1 cut(s) | 546 |
| BsaBI | GATNNNNATC | 1 cut(s) | 69 |
| BsaJI | CCNNGG | 4 cut(s) | 741, 759, 769, 912 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 217, 235, 324, 898, 1032 |
| Bse118I | RCCGGY | 2 cut(s) | 407, 438 |
| Bse1I | ACTGG | 6 cut(s) | 222, 229, 242, 720, 830, 1037 |
| Bse21I | CCTNAGG | 1 cut(s) | 645 |
| Bse8I | GATNNNNATC | 1 cut(s) | 69 |
| BseBI | CCWGG | 1 cut(s) | 626 |
| BseCI | ATCGAT | 1 cut(s) | 546 |
| BseDI | CCNNGG | 4 cut(s) | 741, 759, 769, 912 |
| BseGI | GGATG | 6 cut(s) | 472, 544, 706, 769, 888, 946 |
| BseJI | GATNNNNATC | 1 cut(s) | 69 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 217, 235, 324, 898, 1032 |
| BseMII | CTCAG | 3 cut(s) | 636, 719, 1061 |
| BseNI | ACTGG | 6 cut(s) | 222, 229, 242, 720, 830, 1037 |
| BseSI | GKGCMC | 2 cut(s) | 498, 1025 |
| BseXI | GCAGC | 3 cut(s) | 237, 979, 982 |
| BseYI | CCCAGC | 1 cut(s) | 176 |
| Bsh1236I | CGCG | 5 cut(s) | 6, 111, 138, 336, 771 |
| BshFI | GGCC | 7 cut(s) | 188, 279, 496, 523, 650, 710, 917 |
| BshNI | GGYRCC | 1 cut(s) | 1022 |
| BshVI | ATCGAT | 1 cut(s) | 546 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1061 |
| BsiSI | CCGG | 2 cut(s) | 408, 439 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 217, 235, 324, 898, 1032 |
| BsnI | GGCC | 7 cut(s) | 188, 279, 496, 523, 650, 710, 917 |
| Bsp120I | GGGCCC | 1 cut(s) | 494 |
| Bsp1286I | GDGCHC | 3 cut(s) | 498, 1025, 1061 |
| Bsp1407I | TGTACA | 1 cut(s) | 168 |
| Bsp143I | GATC | 3 cut(s) | 64, 133, 543 |
| Bsp68I | TCGCGA | 1 cut(s) | 111 |
| BspANI | GGCC | 7 cut(s) | 188, 279, 496, 523, 650, 710, 917 |
| BspCNI | CTCAG | 3 cut(s) | 637, 718, 1060 |
| BspDI | ATCGAT | 1 cut(s) | 546 |
| BspFNI | CGCG | 5 cut(s) | 6, 111, 138, 336, 771 |
| BspLI | GGNNCC | 6 cut(s) | 240, 316, 378, 437, 496, 1024 |
| BspMI | ACCTGC | 2 cut(s) | 66, 850 |
| BspPI | GGATC | 2 cut(s) | 141, 551 |
| BspT107I | GGYRCC | 1 cut(s) | 1022 |
| BspTI | CTTAAG | 1 cut(s) | 391 |
| BsrBI | CCGCTC | 2 cut(s) | 422, 730 |
| BsrFI | RCCGGY | 2 cut(s) | 407, 438 |
| BsrGI | TGTACA | 1 cut(s) | 168 |
| BsrI | ACTGG | 6 cut(s) | 222, 229, 242, 720, 830, 1037 |
| BssAI | RCCGGY | 2 cut(s) | 407, 438 |
| BssECI | CCNNGG | 4 cut(s) | 741, 759, 769, 912 |
| BssMI | GATC | 3 cut(s) | 64, 133, 543 |
| BssT1I | CCWWGG | 3 cut(s) | 741, 759, 912 |
| Bst2UI | CCWGG | 1 cut(s) | 626 |
| Bst4CI | ACNGT | 1 cut(s) | 199 |
| Bst6I | CTCTTC | 2 cut(s) | 6, 977 |
| BstAFI | CTTAAG | 1 cut(s) | 391 |
| BstAUI | TGTACA | 1 cut(s) | 168 |
| BstC8I | GCNNGC | 3 cut(s) | 498, 769, 776 |
| BstDEI | CTNAG | 5 cut(s) | 645, 705, 779, 870, 1047 |
| BstDSI | CCRYGG | 1 cut(s) | 769 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 322, 896 |
| BstF5I | GGATG | 6 cut(s) | 472, 544, 706, 769, 888, 946 |
| BstFNI | CGCG | 5 cut(s) | 6, 111, 138, 336, 771 |
| BstHHI | GCGC | 3 cut(s) | 6, 140, 336 |
| BstKTI | GATC | 3 cut(s) | 67, 136, 546 |
| BstMBI | GATC | 3 cut(s) | 64, 133, 543 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 256, 259, 268, 856, 1078, 1081 |
| BstNI | CCWGG | 1 cut(s) | 626 |
| BstNSI | RCATGY | 1 cut(s) | 169 |
| BstSCI | CCNGG | 1 cut(s) | 624 |
| BstSFI | CTRYAG | 1 cut(s) | 414 |
| BstSLI | GKGCMC | 2 cut(s) | 498, 1025 |
| BstUI | CGCG | 5 cut(s) | 6, 111, 138, 336, 771 |
| BstV1I | GCAGC | 3 cut(s) | 237, 979, 982 |
| BstV2I | GAAGAC | 2 cut(s) | 517, 674 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 130, 535, 718 |
| Bsu15I | ATCGAT | 1 cut(s) | 546 |
| Bsu36I | CCTNAGG | 1 cut(s) | 645 |
| BsuRI | GGCC | 7 cut(s) | 188, 279, 496, 523, 650, 710, 917 |
| BsuTUI | ATCGAT | 1 cut(s) | 546 |
| BtgI | CCRYGG | 1 cut(s) | 769 |
| BtsCI | GGATG | 6 cut(s) | 472, 544, 706, 769, 888, 946 |
| BtsI | GCAGTG | 1 cut(s) | 228 |
| BtsIMutI | CAGTG | 5 cut(s) | 195, 215, 228, 249, 965 |
| BtuMI | TCGCGA | 1 cut(s) | 111 |
| BveI | ACCTGC | 2 cut(s) | 66, 850 |
| Cac8I | GCNNGC | 3 cut(s) | 498, 769, 776 |
| CfoI | GCGC | 3 cut(s) | 6, 140, 336 |
| Cfr10I | RCCGGY | 2 cut(s) | 407, 438 |
| Cfr13I | GGNCC | 5 cut(s) | 187, 278, 494, 495, 551 |
| Cfr42I | CCGCGG | 1 cut(s) | 772 |
| ClaI | ATCGAT | 1 cut(s) | 546 |
| CseI | GACGC | 1 cut(s) | 122 |
| Csp6I | GTAC | 3 cut(s) | 169, 411, 963 |
| CviAII | CATG | 2 cut(s) | 166, 967 |
| CviQI | GTAC | 3 cut(s) | 169, 411, 963 |
| DdeI | CTNAG | 5 cut(s) | 645, 705, 779, 870, 1047 |
| DpnI | GATC | 3 cut(s) | 66, 135, 545 |
| DpnII | GATC | 3 cut(s) | 64, 133, 543 |
| Eam1104I | CTCTTC | 2 cut(s) | 6, 977 |
| EarI | CTCTTC | 2 cut(s) | 6, 977 |
| EciI | GGCGGA | 4 cut(s) | 543, 713, 761, 898 |
| Eco130I | CCWWGG | 3 cut(s) | 741, 759, 912 |
| Eco147I | AGGCCT | 2 cut(s) | 523, 917 |
| Eco24I | GRGCYC | 1 cut(s) | 498 |
| Eco47I | GGWCC | 1 cut(s) | 551 |
| Eco57I | CTGAAG | 3 cut(s) | 668, 872, 878 |
| Eco81I | CCTNAGG | 1 cut(s) | 645 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 322, 896 |
| EcoRII | CCWGG | 1 cut(s) | 624 |
| EcoT14I | CCWWGG | 3 cut(s) | 741, 759, 912 |
| EcoT38I | GRGCYC | 1 cut(s) | 498 |
| ErhI | CCWWGG | 3 cut(s) | 741, 759, 912 |
| FaeI | CATG | 2 cut(s) | 169, 970 |
| FaiI | YATR | 6 cut(s) | 131, 167, 296, 804, 968, 1090 |
| FatI | CATG | 2 cut(s) | 165, 966 |
| FauI | CCCGC | 5 cut(s) | 298, 329, 505, 657, 776 |
| FblI | GTMKAC | 2 cut(s) | 204, 885 |
| FokI | GGATG | 6 cut(s) | 479, 551, 713, 776, 875, 953 |
| FriOI | GRGCYC | 1 cut(s) | 498 |
| GlaI | GCGC | 3 cut(s) | 5, 139, 335 |
| GsaI | CCCAGC | 1 cut(s) | 180 |
| GsuI | CTGGAG | 4 cut(s) | 203, 225, 333, 992 |
| HaeIII | GGCC | 7 cut(s) | 188, 279, 496, 523, 650, 710, 917 |
| HapII | CCGG | 2 cut(s) | 408, 439 |
| HgaI | GACGC | 1 cut(s) | 122 |
| HhaI | GCGC | 3 cut(s) | 6, 140, 336 |
| Hin1II | CATG | 2 cut(s) | 169, 970 |
| Hin6I | GCGC | 3 cut(s) | 4, 138, 334 |
| HinP1I | GCGC | 3 cut(s) | 4, 138, 334 |
| HincII | GTYRAC | 4 cut(s) | 205, 659, 738, 886 |
| HindII | GTYRAC | 4 cut(s) | 205, 659, 738, 886 |
| HindIII | AAGCTT | 1 cut(s) | 776 |
| HinfI | GANTC | 6 cut(s) | 49, 83, 106, 755, 902, 944 |
| HpaII | CCGG | 2 cut(s) | 408, 439 |
| HphI | GGTGA | 2 cut(s) | 70, 1048 |
| Hpy166II | GTNNAC | 6 cut(s) | 171, 205, 659, 738, 886, 963 |
| Hpy188I | TCNGA | 2 cut(s) | 235, 897 |
| Hpy188III | TCNNGA | 2 cut(s) | 110, 611 |
| Hpy8I | GTNNAC | 6 cut(s) | 171, 205, 659, 738, 886, 963 |
| Hpy99I | CGWCG | 2 cut(s) | 116, 206 |
| HpyAV | CCTTC | 7 cut(s) | 513, 671, 847, 874, 892, 902, 1033 |
| HpyCH4III | ACNGT | 1 cut(s) | 199 |
| HpyCH4V | TGCA | 3 cut(s) | 324, 430, 1081 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 256, 259, 268, 856, 1078, 1081 |
| HpyF3I | CTNAG | 5 cut(s) | 645, 705, 779, 870, 1047 |
| Hsp92II | CATG | 2 cut(s) | 169, 970 |
| HspAI | GCGC | 3 cut(s) | 4, 138, 334 |
| KspI | CCGCGG | 1 cut(s) | 772 |
| Kzo9I | GATC | 3 cut(s) | 64, 133, 543 |
| LmnI | GCTCC | 8 cut(s) | 244, 308, 314, 331, 376, 419, 727, 856 |
| Lsp1109I | GCAGC | 3 cut(s) | 237, 979, 982 |
| LweI | GCATC | 4 cut(s) | 280, 691, 754, 1052 |
| MaeIII | GTNAC | 2 cut(s) | 22, 53 |
| MalI | GATC | 3 cut(s) | 66, 135, 545 |
| MbiI | CCGCTC | 2 cut(s) | 422, 730 |
| MboI | GATC | 3 cut(s) | 64, 133, 543 |
| MhlI | GDGCHC | 3 cut(s) | 498, 1025, 1061 |
| MluCI | AATT | 1 cut(s) | 286 |
| MlyI | GAGTC | 2 cut(s) | 115, 953 |
| MmeI | TCCRAC | 3 cut(s) | 213, 354, 915 |
| MroXI | GAANNNNTTC | 1 cut(s) | 681 |
| MseI | TTAA | 3 cut(s) | 392, 822, 1029 |
| MspA1I | CMGCKG | 3 cut(s) | 176, 771, 950 |
| MspCI | CTTAAG | 1 cut(s) | 391 |
| MspI | CCGG | 2 cut(s) | 408, 439 |
| MspR9I | CCNGG | 1 cut(s) | 626 |
| MvaI | CCWGG | 1 cut(s) | 626 |
| MvnI | CGCG | 5 cut(s) | 6, 111, 138, 336, 771 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 256, 259, 268, 856, 1078, 1081 |
| NdeII | GATC | 3 cut(s) | 64, 133, 543 |
| NlaIII | CATG | 2 cut(s) | 169, 970 |
| NlaIV | GGNNCC | 6 cut(s) | 240, 316, 378, 437, 496, 1024 |
| NmeAIII | GCCGAG | 2 cut(s) | 567, 676 |
| NruI | TCGCGA | 1 cut(s) | 111 |
| NspI | RCATGY | 1 cut(s) | 169 |
| PaqCI | CACCTGC | 1 cut(s) | 850 |
| PceI | AGGCCT | 2 cut(s) | 523, 917 |
| PdmI | GAANNNNTTC | 1 cut(s) | 681 |
| PfeI | GAWTC | 4 cut(s) | 49, 83, 755, 902 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 217, 1032 |
| PleI | GAGTC | 2 cut(s) | 114, 952 |
| PpsI | GAGTC | 2 cut(s) | 114, 952 |
| Psp6I | CCWGG | 1 cut(s) | 624 |
| PspFI | CCCAGC | 1 cut(s) | 176 |
| PspGI | CCWGG | 1 cut(s) | 624 |
| PspN4I | GGNNCC | 6 cut(s) | 240, 316, 378, 437, 496, 1024 |
| PspOMI | GGGCCC | 1 cut(s) | 494 |
| PspPI | GGNCC | 5 cut(s) | 187, 278, 494, 495, 551 |
| RruI | TCGCGA | 1 cut(s) | 111 |
| RsaI | GTAC | 3 cut(s) | 170, 412, 964 |
| RsaNI | GTAC | 3 cut(s) | 169, 411, 963 |
| SacII | CCGCGG | 1 cut(s) | 772 |
| SalI | GTCGAC | 2 cut(s) | 203, 884 |
| SaqAI | TTAA | 3 cut(s) | 392, 822, 1029 |
| Sau3AI | GATC | 3 cut(s) | 64, 133, 543 |
| Sau96I | GGNCC | 5 cut(s) | 187, 278, 494, 495, 551 |
| SchI | GAGTC | 2 cut(s) | 115, 953 |
| ScrFI | CCNGG | 1 cut(s) | 626 |
| SduI | GDGCHC | 3 cut(s) | 498, 1025, 1061 |
| SfaNI | GCATC | 4 cut(s) | 280, 691, 754, 1052 |
| SfcI | CTRYAG | 1 cut(s) | 414 |
| Sfr303I | CCGCGG | 1 cut(s) | 772 |
| SgrBI | CCGCGG | 1 cut(s) | 772 |
| SinI | GGWCC | 1 cut(s) | 551 |
| SmlI | CTYRAG | 2 cut(s) | 391, 830 |
| SmoI | CTYRAG | 2 cut(s) | 391, 830 |
| Sse9I | AATT | 1 cut(s) | 286 |
| SseBI | AGGCCT | 2 cut(s) | 523, 917 |
| StuI | AGGCCT | 2 cut(s) | 523, 917 |
| StyD4I | CCNGG | 1 cut(s) | 624 |
| StyI | CCWWGG | 3 cut(s) | 741, 759, 912 |
| TaaI | ACNGT | 1 cut(s) | 199 |
| TaqI | TCGA | 6 cut(s) | 63, 204, 344, 546, 885, 920 |
| TasI | AATT | 1 cut(s) | 286 |
| TatI | WGTACW | 1 cut(s) | 168 |
| TauI | GCSGC | 8 cut(s) | 262, 382, 404, 407, 445, 733, 774, 1075 |
| TfiI | GAWTC | 4 cut(s) | 49, 83, 755, 902 |
| Tru1I | TTAA | 3 cut(s) | 392, 822, 1029 |
| Tru9I | TTAA | 3 cut(s) | 392, 822, 1029 |
| TscAI | CASTG | 5 cut(s) | 202, 222, 228, 249, 965 |
| TseI | GCWGC | 4 cut(s) | 250, 992, 995, 1081 |
| TspDTI | ATGAA | 1 cut(s) | 471 |
| TspRI | CASTG | 5 cut(s) | 202, 222, 228, 249, 965 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 217, 1032 |
| Vha464I | CTTAAG | 1 cut(s) | 391 |
| VpaK11BI | GGWCC | 1 cut(s) | 551 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 322, 896 |
| XceI | RCATGY | 1 cut(s) | 169 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 272 |
| XmiI | GTMKAC | 2 cut(s) | 204, 885 |
| XmnI | GAANNNNTTC | 1 cut(s) | 681 |