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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 4 cut(s) | 50, 66, 316, 355 |
| AcoI | YGGCCR | 1 cut(s) | 282 |
| AcyI | GRCGYC | 1 cut(s) | 42 |
| AdeI | CACNNNGTG | 1 cut(s) | 293 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 163, 326, 359 |
| AgsI | TTSAA | 1 cut(s) | 11 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 362 |
| AjnI | CCWGG | 2 cut(s) | 84, 228 |
| AluBI | AGCT | 1 cut(s) | 413 |
| AluI | AGCT | 1 cut(s) | 413 |
| Alw26I | GTCTC | 1 cut(s) | 134 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 474 |
| AoxI | GGCC | 4 cut(s) | 255, 282, 370, 443 |
| ApaI | GGGCCC | 1 cut(s) | 447 |
| ApeKI | GCWGC | 4 cut(s) | 101, 217, 311, 413 |
| AspLEI | GCGC | 5 cut(s) | 68, 151, 280, 316, 318 |
| AspS9I | GGNCC | 5 cut(s) | 61, 133, 364, 443, 444 |
| AsuC2I | CCSGG | 2 cut(s) | 21, 137 |
| AsuHPI | GGTGA | 1 cut(s) | 221 |
| AvaII | GGWCC | 3 cut(s) | 61, 133, 364 |
| BaeGI | GKGCMC | 1 cut(s) | 447 |
| BalI | TGGCCA | 1 cut(s) | 284 |
| BanII | GRGCYC | 1 cut(s) | 447 |
| BbsI | GAAGAC | 1 cut(s) | 128 |
| BbvI | GCAGC | 4 cut(s) | 88, 204, 323, 400 |
| BccI | CCATC | 2 cut(s) | 206, 207 |
| BceAI | ACGGC | 3 cut(s) | 21, 242, 305 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 395, 429 |
| BciT130I | CCWGG | 2 cut(s) | 86, 230 |
| BcnI | CCSGG | 2 cut(s) | 21, 137 |
| BcoDI | GTCTC | 1 cut(s) | 134 |
| BfoI | RGCGCY | 2 cut(s) | 152, 281 |
| BisI | GCNGC | 8 cut(s) | 102, 114, 188, 218, 234, 312, 353, 414 |
| BlpI | GCTNAGC | 1 cut(s) | 152 |
| BlsI | GCNGC | 8 cut(s) | 103, 115, 189, 219, 235, 313, 354, 415 |
| Bme1390I | CCNGG | 4 cut(s) | 21, 86, 137, 230 |
| Bme18I | GGWCC | 3 cut(s) | 61, 133, 364 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 362 |
| BmgT120I | GGNCC | 5 cut(s) | 61, 133, 364, 443, 444 |
| BmiI | GGNNCC | 7 cut(s) | 90, 135, 168, 351, 365, 444, 445 |
| BmrFI | CCNGG | 4 cut(s) | 21, 86, 137, 230 |
| BmsI | GCATC | 1 cut(s) | 165 |
| BpiI | GAAGAC | 1 cut(s) | 128 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 152 |
| BpuMI | CCSGG | 2 cut(s) | 21, 137 |
| BsaHI | GRCGYC | 1 cut(s) | 42 |
| BsaJI | CCNNGG | 4 cut(s) | 20, 57, 367, 428 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 163, 326, 359 |
| Bse1I | ACTGG | 2 cut(s) | 170, 244 |
| BseBI | CCWGG | 2 cut(s) | 86, 230 |
| BseDI | CCNNGG | 4 cut(s) | 20, 57, 367, 428 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 163, 326, 359 |
| BseMII | CTCAG | 2 cut(s) | 131, 153 |
| BseNI | ACTGG | 2 cut(s) | 170, 244 |
| BsePI | GCGCGC | 1 cut(s) | 314 |
| BseSI | GKGCMC | 1 cut(s) | 447 |
| BseXI | GCAGC | 4 cut(s) | 88, 204, 323, 400 |
| BseYI | CCCAGC | 1 cut(s) | 104 |
| BsgI | GTGCAG | 1 cut(s) | 320 |
| Bsh1236I | CGCG | 4 cut(s) | 50, 66, 316, 355 |
| BshFI | GGCC | 4 cut(s) | 257, 284, 372, 445 |
| BsiSI | CCGG | 2 cut(s) | 20, 137 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 163, 326, 359 |
| BsmAI | GTCTC | 1 cut(s) | 134 |
| BsmBI | CGTCTC | 1 cut(s) | 134 |
| BsnI | GGCC | 4 cut(s) | 257, 284, 372, 445 |
| Bsp120I | GGGCCC | 1 cut(s) | 443 |
| Bsp1286I | GDGCHC | 1 cut(s) | 447 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 152 |
| Bsp19I | CCATGG | 1 cut(s) | 57 |
| Bsp68I | TCGCGA | 1 cut(s) | 50 |
| BspANI | GGCC | 4 cut(s) | 257, 284, 372, 445 |
| BspCNI | CTCAG | 2 cut(s) | 130, 154 |
| BspFNI | CGCG | 4 cut(s) | 50, 66, 316, 355 |
| BspLI | GGNNCC | 7 cut(s) | 90, 135, 168, 351, 365, 444, 445 |
| BsrI | ACTGG | 2 cut(s) | 170, 244 |
| BssECI | CCNNGG | 4 cut(s) | 20, 57, 367, 428 |
| BssHII | GCGCGC | 1 cut(s) | 314 |
| BssNI | GRCGYC | 1 cut(s) | 42 |
| BssT1I | CCWWGG | 1 cut(s) | 57 |
| Bst2UI | CCWGG | 2 cut(s) | 86, 230 |
| BstACI | GRCGYC | 1 cut(s) | 42 |
| BstDEI | CTNAG | 4 cut(s) | 117, 152, 162, 203 |
| BstDSI | CCRYGG | 2 cut(s) | 57, 428 |
| BstFNI | CGCG | 4 cut(s) | 50, 66, 316, 355 |
| BstH2I | RGCGCY | 2 cut(s) | 152, 281 |
| BstHHI | GCGC | 5 cut(s) | 68, 151, 280, 316, 318 |
| BstMAI | GTCTC | 1 cut(s) | 134 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 110, 184, 230, 242, 298 |
| BstNI | CCWGG | 2 cut(s) | 86, 230 |
| BstSCI | CCNGG | 4 cut(s) | 19, 84, 135, 228 |
| BstSLI | GKGCMC | 1 cut(s) | 447 |
| BstUI | CGCG | 4 cut(s) | 50, 66, 316, 355 |
| BstV1I | GCAGC | 4 cut(s) | 88, 204, 323, 400 |
| BstV2I | GAAGAC | 1 cut(s) | 128 |
| BsuRI | GGCC | 4 cut(s) | 257, 284, 372, 445 |
| BtgI | CCRYGG | 2 cut(s) | 57, 428 |
| BtsIMutI | CAGTG | 1 cut(s) | 177 |
| BtuMI | TCGCGA | 1 cut(s) | 50 |
| CaiI | CAGNNNCTG | 1 cut(s) | 474 |
| CfoI | GCGC | 5 cut(s) | 68, 151, 280, 316, 318 |
| Cfr13I | GGNCC | 5 cut(s) | 61, 133, 364, 443, 444 |
| CseI | GACGC | 2 cut(s) | 50, 151 |
| CviAII | CATG | 3 cut(s) | 58, 94, 184 |
| DdeI | CTNAG | 4 cut(s) | 117, 152, 162, 203 |
| DraIII | CACNNNGTG | 1 cut(s) | 293 |
| DriI | GACNNNNNGTC | 1 cut(s) | 362 |
| EaeI | YGGCCR | 1 cut(s) | 282 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 362 |
| EciI | GGCGGA | 1 cut(s) | 6 |
| Eco130I | CCWWGG | 1 cut(s) | 57 |
| Eco147I | AGGCCT | 1 cut(s) | 372 |
| Eco24I | GRGCYC | 1 cut(s) | 447 |
| Eco47I | GGWCC | 3 cut(s) | 61, 133, 364 |
| EcoO109I | RGGNCCY | 1 cut(s) | 443 |
| EcoRII | CCWGG | 2 cut(s) | 84, 228 |
| EcoT14I | CCWWGG | 1 cut(s) | 57 |
| EcoT38I | GRGCYC | 1 cut(s) | 447 |
| ErhI | CCWWGG | 1 cut(s) | 57 |
| Esp3I | CGTCTC | 1 cut(s) | 134 |
| FaeI | CATG | 3 cut(s) | 61, 97, 187 |
| FaiI | YATR | 4 cut(s) | 59, 95, 99, 185 |
| FatI | CATG | 3 cut(s) | 57, 93, 183 |
| FauI | CCCGC | 2 cut(s) | 387, 454 |
| Fnu4HI | GCNGC | 8 cut(s) | 102, 114, 188, 218, 234, 312, 353, 414 |
| FriOI | GRGCYC | 1 cut(s) | 447 |
| Fsp4HI | GCNGC | 8 cut(s) | 102, 114, 188, 218, 234, 312, 353, 414 |
| GlaI | GCGC | 5 cut(s) | 67, 150, 279, 315, 317 |
| GluI | GCNGC | 8 cut(s) | 102, 114, 188, 218, 234, 312, 353, 414 |
| GsaI | CCCAGC | 1 cut(s) | 108 |
| HaeII | RGCGCY | 2 cut(s) | 152, 281 |
| HaeIII | GGCC | 4 cut(s) | 257, 284, 372, 445 |
| HapII | CCGG | 2 cut(s) | 20, 137 |
| HgaI | GACGC | 2 cut(s) | 50, 151 |
| HhaI | GCGC | 5 cut(s) | 68, 151, 280, 316, 318 |
| Hin1I | GRCGYC | 1 cut(s) | 42 |
| Hin1II | CATG | 3 cut(s) | 61, 97, 187 |
| Hin6I | GCGC | 5 cut(s) | 66, 149, 278, 314, 316 |
| HinP1I | GCGC | 5 cut(s) | 66, 149, 278, 314, 316 |
| HinfI | GANTC | 1 cut(s) | 424 |
| HpaII | CCGG | 2 cut(s) | 20, 137 |
| HphI | GGTGA | 1 cut(s) | 221 |
| Hpy166II | GTNNAC | 1 cut(s) | 133 |
| Hpy188I | TCNGA | 4 cut(s) | 120, 163, 368, 476 |
| Hpy188III | TCNNGA | 1 cut(s) | 49 |
| Hpy8I | GTNNAC | 1 cut(s) | 133 |
| Hpy99I | CGWCG | 1 cut(s) | 360 |
| HpyAV | CCTTC | 1 cut(s) | 55 |
| HpyCH4V | TGCA | 1 cut(s) | 301 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 110, 184, 230, 242, 298 |
| HpyF3I | CTNAG | 4 cut(s) | 117, 152, 162, 203 |
| Hsp92I | GRCGYC | 1 cut(s) | 42 |
| Hsp92II | CATG | 3 cut(s) | 61, 97, 187 |
| HspAI | GCGC | 5 cut(s) | 66, 149, 278, 314, 316 |
| LmnI | GCTCC | 1 cut(s) | 349 |
| Lsp1109I | GCAGC | 4 cut(s) | 88, 204, 323, 400 |
| LweI | GCATC | 1 cut(s) | 165 |
| MaeIII | GTNAC | 2 cut(s) | 38, 331 |
| MboII | GAAGA | 3 cut(s) | 133, 316, 468 |
| MhlI | GDGCHC | 1 cut(s) | 447 |
| MlsI | TGGCCA | 1 cut(s) | 284 |
| MluCI | AATT | 2 cut(s) | 72, 79 |
| MluNI | TGGCCA | 1 cut(s) | 284 |
| MlyI | GAGTC | 1 cut(s) | 418 |
| MmeI | TCCRAC | 1 cut(s) | 327 |
| MnlI | CCTC | 7 cut(s) | 157, 247, 267, 334, 353, 362, 458 |
| Mox20I | TGGCCA | 1 cut(s) | 284 |
| MscI | TGGCCA | 1 cut(s) | 284 |
| Msp20I | TGGCCA | 1 cut(s) | 284 |
| MspA1I | CMGCKG | 1 cut(s) | 382 |
| MspI | CCGG | 2 cut(s) | 20, 137 |
| MspR9I | CCNGG | 4 cut(s) | 21, 86, 137, 230 |
| MvaI | CCWGG | 2 cut(s) | 86, 230 |
| MvnI | CGCG | 4 cut(s) | 50, 66, 316, 355 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 110, 184, 230, 242, 298 |
| NciI | CCSGG | 2 cut(s) | 21, 137 |
| NcoI | CCATGG | 1 cut(s) | 57 |
| NlaIII | CATG | 3 cut(s) | 61, 97, 187 |
| NlaIV | GGNNCC | 7 cut(s) | 90, 135, 168, 351, 365, 444, 445 |
| NmuCI | GTSAC | 2 cut(s) | 38, 331 |
| NruI | TCGCGA | 1 cut(s) | 50 |
| PauI | GCGCGC | 1 cut(s) | 314 |
| PceI | AGGCCT | 1 cut(s) | 372 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 364 |
| PfoI | TCCNGGA | 1 cut(s) | 84 |
| PkrI | GCNGC | 8 cut(s) | 103, 115, 189, 219, 235, 313, 354, 415 |
| PleI | GAGTC | 1 cut(s) | 418 |
| PpsI | GAGTC | 1 cut(s) | 418 |
| Psp6I | CCWGG | 2 cut(s) | 84, 228 |
| PspFI | CCCAGC | 1 cut(s) | 104 |
| PspGI | CCWGG | 2 cut(s) | 84, 228 |
| PspN4I | GGNNCC | 7 cut(s) | 90, 135, 168, 351, 365, 444, 445 |
| PspOMI | GGGCCC | 1 cut(s) | 443 |
| PspPI | GGNCC | 5 cut(s) | 61, 133, 364, 443, 444 |
| PstNI | CAGNNNCTG | 1 cut(s) | 474 |
| PteI | GCGCGC | 1 cut(s) | 314 |
| RruI | TCGCGA | 1 cut(s) | 50 |
| SatI | GCNGC | 8 cut(s) | 102, 114, 188, 218, 234, 312, 353, 414 |
| Sau96I | GGNCC | 5 cut(s) | 61, 133, 364, 443, 444 |
| SchI | GAGTC | 1 cut(s) | 418 |
| ScrFI | CCNGG | 4 cut(s) | 21, 86, 137, 230 |
| SduI | GDGCHC | 1 cut(s) | 447 |
| SetI | ASST | 4 cut(s) | 168, 331, 415, 423 |
| SfaNI | GCATC | 1 cut(s) | 165 |
| SinI | GGWCC | 3 cut(s) | 61, 133, 364 |
| Sse9I | AATT | 2 cut(s) | 72, 79 |
| SseBI | AGGCCT | 1 cut(s) | 372 |
| StuI | AGGCCT | 1 cut(s) | 372 |
| StyD4I | CCNGG | 4 cut(s) | 19, 84, 135, 228 |
| StyI | CCWWGG | 1 cut(s) | 57 |
| TaqI | TCGA | 1 cut(s) | 339 |
| TasI | AATT | 2 cut(s) | 72, 79 |
| TauI | GCSGC | 4 cut(s) | 116, 190, 236, 355 |
| TscAI | CASTG | 1 cut(s) | 177 |
| TseFI | GTSAC | 2 cut(s) | 38, 331 |
| TseI | GCWGC | 4 cut(s) | 101, 217, 311, 413 |
| Tsp45I | GTSAC | 2 cut(s) | 38, 331 |
| TspGWI | ACGGA | 1 cut(s) | 417 |
| TspRI | CASTG | 1 cut(s) | 177 |
| VpaK11BI | GGWCC | 3 cut(s) | 61, 133, 364 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 236 |