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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 64 |
| AccBSI | CCGCTC | 3 cut(s) | 346, 412, 475 |
| AccII | CGCG | 3 cut(s) | 377, 435, 596 |
| AclWI | GGATC | 1 cut(s) | 188 |
| AcoI | YGGCCR | 2 cut(s) | 402, 597 |
| AcuI | CTGAAG | 1 cut(s) | 600 |
| AcyI | GRCGYC | 2 cut(s) | 65, 349 |
| AfaI | GTAC | 1 cut(s) | 635 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 411, 469, 573, 574 |
| AflIII | ACRYGT | 1 cut(s) | 255 |
| AgsI | TTSAA | 2 cut(s) | 611, 619 |
| AluBI | AGCT | 6 cut(s) | 32, 44, 219, 298, 394, 499 |
| AluI | AGCT | 6 cut(s) | 32, 44, 219, 298, 394, 499 |
| Alw26I | GTCTC | 2 cut(s) | 323, 442 |
| AlwI | GGATC | 1 cut(s) | 188 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 283 |
| Ama87I | CYCGRG | 1 cut(s) | 384 |
| AoxI | GGCC | 3 cut(s) | 169, 402, 597 |
| ApeKI | GCWGC | 6 cut(s) | 44, 247, 277, 511, 544, 602 |
| AspLEI | GCGC | 1 cut(s) | 67 |
| AspS9I | GGNCC | 1 cut(s) | 4 |
| AsuHPI | GGTGA | 2 cut(s) | 134, 569 |
| AvaI | CYCGRG | 1 cut(s) | 384 |
| AvaII | GGWCC | 1 cut(s) | 4 |
| AxyI | CCTNAGG | 1 cut(s) | 572 |
| BalI | TGGCCA | 1 cut(s) | 404 |
| BanI | GGYRCC | 1 cut(s) | 64 |
| BbvI | GCAGC | 6 cut(s) | 31, 234, 289, 523, 556, 589 |
| BccI | CCATC | 4 cut(s) | 113, 150, 334, 439 |
| BceAI | ACGGC | 3 cut(s) | 32, 210, 590 |
| BciVI | GTATCC | 1 cut(s) | 580 |
| BcoDI | GTCTC | 2 cut(s) | 323, 442 |
| BfaI | CTAG | 2 cut(s) | 173, 551 |
| BfmI | CTRYAG | 1 cut(s) | 214 |
| BfoI | RGCGCY | 1 cut(s) | 68 |
| BfuI | GTATCC | 1 cut(s) | 580 |
| Bme18I | GGWCC | 1 cut(s) | 4 |
| BmeT110I | CYCGRG | 1 cut(s) | 384 |
| BmgT120I | GGNCC | 1 cut(s) | 4 |
| BmiI | GGNNCC | 1 cut(s) | 66 |
| BmsI | GCATC | 1 cut(s) | 370 |
| BpmI | CTGGAG | 1 cut(s) | 305 |
| Bpu10I | CCTNAGC | 1 cut(s) | 299 |
| BsaHI | GRCGYC | 2 cut(s) | 65, 349 |
| BsaJI | CCNNGG | 4 cut(s) | 48, 385, 486, 594 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 71, 101, 422, 452 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 411, 469, 573, 574 |
| Bse1I | ACTGG | 2 cut(s) | 75, 205 |
| Bse21I | CCTNAGG | 1 cut(s) | 572 |
| BseDI | CCNNGG | 4 cut(s) | 48, 385, 486, 594 |
| BseGI | GGATG | 2 cut(s) | 124, 385 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 411, 469, 573, 574 |
| BseMII | CTCAG | 1 cut(s) | 563 |
| BseNI | ACTGG | 2 cut(s) | 75, 205 |
| BseRI | GAGGAG | 1 cut(s) | 278 |
| BseX3I | CGGCCG | 1 cut(s) | 597 |
| BseXI | GCAGC | 6 cut(s) | 31, 234, 289, 523, 556, 589 |
| BsgI | GTGCAG | 3 cut(s) | 233, 530, 563 |
| Bsh1236I | CGCG | 3 cut(s) | 377, 435, 596 |
| Bsh1285I | CGRYCG | 2 cut(s) | 433, 600 |
| BshFI | GGCC | 3 cut(s) | 171, 404, 599 |
| BshNI | GGYRCC | 1 cut(s) | 64 |
| BsiEI | CGRYCG | 2 cut(s) | 433, 600 |
| BsiHKCI | CYCGRG | 1 cut(s) | 384 |
| BslFI | GGGAC | 1 cut(s) | 428 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 411, 469, 573, 574 |
| BsmAI | GTCTC | 2 cut(s) | 323, 442 |
| BsmBI | CGTCTC | 1 cut(s) | 442 |
| BsmFI | GGGAC | 1 cut(s) | 428 |
| BsmI | GAATGC | 1 cut(s) | 614 |
| BsnI | GGCC | 3 cut(s) | 171, 404, 599 |
| BsoBI | CYCGRG | 1 cut(s) | 384 |
| Bsp143I | GATC | 1 cut(s) | 180 |
| BspANI | GGCC | 3 cut(s) | 171, 404, 599 |
| BspCNI | CTCAG | 1 cut(s) | 564 |
| BspFNI | CGCG | 3 cut(s) | 377, 435, 596 |
| BspHI | TCATGA | 1 cut(s) | 111 |
| BspLI | GGNNCC | 1 cut(s) | 66 |
| BspPI | GGATC | 1 cut(s) | 188 |
| BspT107I | GGYRCC | 1 cut(s) | 64 |
| BsrBI | CCGCTC | 3 cut(s) | 346, 412, 475 |
| BsrI | ACTGG | 2 cut(s) | 75, 205 |
| BssECI | CCNNGG | 4 cut(s) | 48, 385, 486, 594 |
| BssMI | GATC | 1 cut(s) | 180 |
| BssNI | GRCGYC | 2 cut(s) | 65, 349 |
| BssT1I | CCWWGG | 1 cut(s) | 486 |
| Bst4CI | ACNGT | 2 cut(s) | 400, 624 |
| Bst6I | CTCTTC | 1 cut(s) | 143 |
| BstACI | GRCGYC | 2 cut(s) | 65, 349 |
| BstC8I | GCNNGC | 4 cut(s) | 25, 69, 392, 568 |
| BstDEI | CTNAG | 2 cut(s) | 299, 572 |
| BstDSI | CCRYGG | 2 cut(s) | 48, 594 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 467 |
| BstF5I | GGATG | 2 cut(s) | 124, 385 |
| BstFNI | CGCG | 3 cut(s) | 377, 435, 596 |
| BstH2I | RGCGCY | 1 cut(s) | 68 |
| BstHHI | GCGC | 1 cut(s) | 67 |
| BstKTI | GATC | 1 cut(s) | 183 |
| BstMAI | GTCTC | 2 cut(s) | 323, 442 |
| BstMBI | GATC | 1 cut(s) | 180 |
| BstMCI | CGRYCG | 2 cut(s) | 433, 600 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 29, 71, 101, 599, 602, 611 |
| BstNSI | RCATGY | 1 cut(s) | 259 |
| BstSFI | CTRYAG | 1 cut(s) | 214 |
| BstUI | CGCG | 3 cut(s) | 377, 435, 596 |
| BstV1I | GCAGC | 6 cut(s) | 31, 234, 289, 523, 556, 589 |
| BstX2I | RGATCY | 1 cut(s) | 180 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 82 |
| BstYI | RGATCY | 1 cut(s) | 180 |
| BstZI | CGGCCG | 1 cut(s) | 597 |
| Bsu36I | CCTNAGG | 1 cut(s) | 572 |
| BsuI | GTATCC | 1 cut(s) | 580 |
| BsuRI | GGCC | 3 cut(s) | 171, 404, 599 |
| BtgI | CCRYGG | 2 cut(s) | 48, 594 |
| BtgZI | GCGATG | 1 cut(s) | 442 |
| BtsCI | GGATG | 2 cut(s) | 124, 385 |
| BtsIMutI | CAGTG | 1 cut(s) | 82 |
| Cac8I | GCNNGC | 4 cut(s) | 25, 69, 392, 568 |
| CaiI | CAGNNNCTG | 1 cut(s) | 283 |
| CciI | TCATGA | 1 cut(s) | 111 |
| CciNI | GCGGCCGC | 1 cut(s) | 597 |
| CfoI | GCGC | 1 cut(s) | 67 |
| Cfr13I | GGNCC | 1 cut(s) | 4 |
| Cfr42I | CCGCGG | 1 cut(s) | 597 |
| CseI | GACGC | 2 cut(s) | 338, 424 |
| Csp6I | GTAC | 1 cut(s) | 634 |
| CviAII | CATG | 2 cut(s) | 112, 256 |
| CviQI | GTAC | 1 cut(s) | 634 |
| DdeI | CTNAG | 2 cut(s) | 299, 572 |
| DinI | GGCGCC | 1 cut(s) | 66 |
| DpnI | GATC | 1 cut(s) | 182 |
| DpnII | GATC | 1 cut(s) | 180 |
| EaeI | YGGCCR | 2 cut(s) | 402, 597 |
| EagI | CGGCCG | 1 cut(s) | 597 |
| Eam1104I | CTCTTC | 1 cut(s) | 143 |
| EarI | CTCTTC | 1 cut(s) | 143 |
| EciI | GGCGGA | 2 cut(s) | 350, 511 |
| EclXI | CGGCCG | 1 cut(s) | 597 |
| Eco130I | CCWWGG | 1 cut(s) | 486 |
| Eco47I | GGWCC | 1 cut(s) | 4 |
| Eco52I | CGGCCG | 1 cut(s) | 597 |
| Eco57I | CTGAAG | 1 cut(s) | 600 |
| Eco81I | CCTNAGG | 1 cut(s) | 572 |
| Eco88I | CYCGRG | 1 cut(s) | 384 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 467 |
| EcoT14I | CCWWGG | 1 cut(s) | 486 |
| EgeI | GGCGCC | 1 cut(s) | 66 |
| EheI | GGCGCC | 1 cut(s) | 66 |
| ErhI | CCWWGG | 1 cut(s) | 486 |
| Esp3I | CGTCTC | 1 cut(s) | 442 |
| FaeI | CATG | 2 cut(s) | 115, 259 |
| FaiI | YATR | 3 cut(s) | 102, 113, 257 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 282, 314 |
| FaqI | GGGAC | 1 cut(s) | 428 |
| FatI | CATG | 2 cut(s) | 111, 255 |
| FauI | CCCGC | 5 cut(s) | 32, 169, 405, 507, 575 |
| FokI | GGATG | 2 cut(s) | 131, 392 |
| FspBI | CTAG | 2 cut(s) | 173, 551 |
| GlaI | GCGC | 1 cut(s) | 66 |
| GsuI | CTGGAG | 1 cut(s) | 305 |
| HaeII | RGCGCY | 1 cut(s) | 68 |
| HaeIII | GGCC | 3 cut(s) | 171, 404, 599 |
| HgaI | GACGC | 2 cut(s) | 338, 424 |
| HhaI | GCGC | 1 cut(s) | 67 |
| Hin1I | GRCGYC | 2 cut(s) | 65, 349 |
| Hin1II | CATG | 2 cut(s) | 115, 259 |
| Hin6I | GCGC | 1 cut(s) | 65 |
| HinP1I | GCGC | 1 cut(s) | 65 |
| HinfI | GANTC | 2 cut(s) | 86, 518 |
| HphI | GGTGA | 2 cut(s) | 134, 569 |
| Hpy188III | TCNNGA | 2 cut(s) | 112, 322 |
| HpyAV | CCTTC | 3 cut(s) | 100, 284, 575 |
| HpyCH4III | ACNGT | 2 cut(s) | 400, 624 |
| HpyCH4V | TGCA | 3 cut(s) | 250, 511, 544 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 29, 71, 101, 599, 602, 611 |
| HpyF3I | CTNAG | 2 cut(s) | 299, 572 |
| Hsp92I | GRCGYC | 2 cut(s) | 65, 349 |
| Hsp92II | CATG | 2 cut(s) | 115, 259 |
| HspAI | GCGC | 1 cut(s) | 65 |
| KasI | GGCGCC | 1 cut(s) | 64 |
| KspI | CCGCGG | 1 cut(s) | 597 |
| Kzo9I | GATC | 1 cut(s) | 180 |
| LmnI | GCTCC | 5 cut(s) | 37, 295, 343, 448, 472 |
| Lsp1109I | GCAGC | 6 cut(s) | 31, 234, 289, 523, 556, 589 |
| LweI | GCATC | 1 cut(s) | 370 |
| MaeI | CTAG | 2 cut(s) | 173, 551 |
| MaeIII | GTNAC | 2 cut(s) | 77, 368 |
| MalI | GATC | 1 cut(s) | 182 |
| MbiI | CCGCTC | 3 cut(s) | 346, 412, 475 |
| MboI | GATC | 1 cut(s) | 180 |
| MboII | GAAGA | 3 cut(s) | 28, 130, 283 |
| MflI | RGATCY | 1 cut(s) | 180 |
| MlsI | TGGCCA | 1 cut(s) | 404 |
| MluNI | TGGCCA | 1 cut(s) | 404 |
| Mly113I | GGCGCC | 1 cut(s) | 65 |
| MlyI | GAGTC | 2 cut(s) | 80, 527 |
| Mox20I | TGGCCA | 1 cut(s) | 404 |
| MscI | TGGCCA | 1 cut(s) | 404 |
| MslI | CAYNNNNRTG | 1 cut(s) | 506 |
| Msp20I | TGGCCA | 1 cut(s) | 404 |
| MspA1I | CMGCKG | 4 cut(s) | 514, 547, 596, 602 |
| Mva1269I | GAATGC | 1 cut(s) | 614 |
| MvnI | CGCG | 3 cut(s) | 377, 435, 596 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 29, 71, 101, 599, 602, 611 |
| NarI | GGCGCC | 1 cut(s) | 65 |
| NdeII | GATC | 1 cut(s) | 180 |
| NlaIII | CATG | 2 cut(s) | 115, 259 |
| NlaIV | GGNNCC | 1 cut(s) | 66 |
| NmeAIII | GCCGAG | 2 cut(s) | 121, 200 |
| NmuCI | GTSAC | 2 cut(s) | 77, 368 |
| NotI | GCGGCCGC | 1 cut(s) | 597 |
| NspI | RCATGY | 1 cut(s) | 259 |
| PagI | TCATGA | 1 cut(s) | 111 |
| PciI | ACATGT | 1 cut(s) | 255 |
| PctI | GAATGC | 1 cut(s) | 614 |
| PflFI | GACNNNGTC | 1 cut(s) | 434 |
| PleI | GAGTC | 2 cut(s) | 80, 526 |
| PluTI | GGCGCC | 1 cut(s) | 68 |
| PpsI | GAGTC | 2 cut(s) | 80, 526 |
| PscI | ACATGT | 1 cut(s) | 255 |
| PspN4I | GGNNCC | 1 cut(s) | 66 |
| PspPI | GGNCC | 1 cut(s) | 4 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 92, 124 |
| PstNI | CAGNNNCTG | 1 cut(s) | 283 |
| PsuI | RGATCY | 1 cut(s) | 180 |
| PsyI | GACNNNGTC | 1 cut(s) | 434 |
| RsaI | GTAC | 1 cut(s) | 635 |
| RsaNI | GTAC | 1 cut(s) | 634 |
| RseI | CAYNNNNRTG | 1 cut(s) | 506 |
| SacII | CCGCGG | 1 cut(s) | 597 |
| Sau3AI | GATC | 1 cut(s) | 180 |
| Sau96I | GGNCC | 1 cut(s) | 4 |
| SchI | GAGTC | 2 cut(s) | 80, 527 |
| SfaNI | GCATC | 1 cut(s) | 370 |
| SfcI | CTRYAG | 1 cut(s) | 214 |
| SfoI | GGCGCC | 1 cut(s) | 66 |
| Sfr303I | CCGCGG | 1 cut(s) | 597 |
| SgrBI | CCGCGG | 1 cut(s) | 597 |
| SinI | GGWCC | 1 cut(s) | 4 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 506 |
| SspDI | GGCGCC | 1 cut(s) | 64 |
| SspMI | CTAG | 2 cut(s) | 173, 551 |
| StyI | CCWWGG | 1 cut(s) | 486 |
| TaaI | ACNGT | 2 cut(s) | 400, 624 |
| TaqI | TCGA | 1 cut(s) | 288 |
| TatI | WGTACW | 1 cut(s) | 633 |
| TauI | GCSGC | 8 cut(s) | 74, 171, 349, 527, 550, 596, 599, 602 |
| TscAI | CASTG | 1 cut(s) | 82 |
| TseFI | GTSAC | 2 cut(s) | 77, 368 |
| TseI | GCWGC | 6 cut(s) | 44, 247, 277, 511, 544, 602 |
| Tsp45I | GTSAC | 2 cut(s) | 77, 368 |
| TspDTI | ATGAA | 1 cut(s) | 100 |
| TspGWI | ACGGA | 3 cut(s) | 24, 131, 551 |
| TspRI | CASTG | 1 cut(s) | 82 |
| Tth111I | GACNNNGTC | 1 cut(s) | 434 |
| VpaK11BI | GGWCC | 1 cut(s) | 4 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 467 |
| XceI | RCATGY | 1 cut(s) | 259 |
| XspI | CTAG | 2 cut(s) | 173, 551 |