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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 3 cut(s) | 338, 374, 586 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 384 |
| AccBSI | CCGCTC | 2 cut(s) | 82, 492 |
| AccII | CGCG | 2 cut(s) | 582, 584 |
| AclWI | GGATC | 2 cut(s) | 150, 169 |
| AcuI | CTGAAG | 2 cut(s) | 158, 164 |
| AcyI | GRCGYC | 4 cut(s) | 339, 375, 395, 524 |
| AfaI | GTAC | 1 cut(s) | 305 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 28, 81, 184, 384, 440, 463, 505 |
| AgsI | TTSAA | 1 cut(s) | 289 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 106 |
| AjnI | CCWGG | 2 cut(s) | 351, 590 |
| AleI | CACNNNNGTG | 1 cut(s) | 592 |
| AluBI | AGCT | 5 cut(s) | 64, 131, 258, 461, 474 |
| AluI | AGCT | 5 cut(s) | 64, 131, 258, 461, 474 |
| Alw26I | GTCTC | 2 cut(s) | 402, 553 |
| AlwI | GGATC | 2 cut(s) | 150, 169 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 316 |
| Ama87I | CYCGRG | 1 cut(s) | 54 |
| AoxI | GGCC | 2 cut(s) | 410, 570 |
| ApeKI | GCWGC | 4 cut(s) | 64, 258, 269, 361 |
| AspLEI | GCGC | 3 cut(s) | 341, 377, 584 |
| AspS9I | GGNCC | 3 cut(s) | 85, 410, 571 |
| AsuHPI | GGTGA | 2 cut(s) | 223, 506 |
| AvaI | CYCGRG | 1 cut(s) | 54 |
| AvaII | GGWCC | 1 cut(s) | 85 |
| BanI | GGYRCC | 3 cut(s) | 338, 374, 586 |
| BbsI | GAAGAC | 1 cut(s) | 516 |
| BbvCI | CCTCAGC | 1 cut(s) | 462 |
| BbvI | GCAGC | 4 cut(s) | 51, 245, 256, 348 |
| BccI | CCATC | 2 cut(s) | 313, 421 |
| BceAI | ACGGC | 1 cut(s) | 260 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 32, 66 |
| BciT130I | CCWGG | 2 cut(s) | 353, 592 |
| BcoDI | GTCTC | 2 cut(s) | 402, 553 |
| BfaI | CTAG | 2 cut(s) | 116, 503 |
| BfoI | RGCGCY | 2 cut(s) | 342, 378 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 281, 418 |
| BisI | GCNGC | 9 cut(s) | 65, 259, 270, 273, 362, 484, 527, 570, 585 |
| BlsI | GCNGC | 9 cut(s) | 66, 260, 271, 274, 363, 485, 528, 571, 586 |
| Bme1390I | CCNGG | 2 cut(s) | 353, 592 |
| Bme18I | GGWCC | 1 cut(s) | 85 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 106 |
| BmeT110I | CYCGRG | 1 cut(s) | 54 |
| BmgT120I | GGNCC | 3 cut(s) | 85, 410, 571 |
| BmiI | GGNNCC | 5 cut(s) | 86, 340, 376, 450, 588 |
| BmrFI | CCNGG | 2 cut(s) | 353, 592 |
| BmsI | GCATC | 3 cut(s) | 25, 34, 40 |
| BpiI | GAAGAC | 1 cut(s) | 516 |
| BpmI | CTGGAG | 1 cut(s) | 170 |
| Bpu10I | CCTNAGC | 2 cut(s) | 462, 475 |
| BpuEI | CTTGAG | 1 cut(s) | 74 |
| BsaHI | GRCGYC | 4 cut(s) | 339, 375, 395, 524 |
| BsaJI | CCNNGG | 4 cut(s) | 27, 55, 276, 590 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 200, 230 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 28, 81, 184, 384, 440, 463, 505 |
| Bse1I | ACTGG | 1 cut(s) | 153 |
| BseBI | CCWGG | 2 cut(s) | 353, 592 |
| BseDI | CCNNGG | 4 cut(s) | 27, 55, 276, 590 |
| BseGI | GGATG | 1 cut(s) | 55 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 28, 81, 184, 384, 440, 463, 505 |
| BseMII | CTCAG | 3 cut(s) | 413, 453, 489 |
| BseNI | ACTGG | 1 cut(s) | 153 |
| BseRI | GAGGAG | 1 cut(s) | 268 |
| BseXI | GCAGC | 4 cut(s) | 51, 245, 256, 348 |
| BseYI | CCCAGC | 1 cut(s) | 407 |
| BsgI | GTGCAG | 2 cut(s) | 244, 347 |
| Bsh1236I | CGCG | 2 cut(s) | 582, 584 |
| Bsh1285I | CGRYCG | 1 cut(s) | 103 |
| BshFI | GGCC | 2 cut(s) | 412, 572 |
| BshNI | GGYRCC | 3 cut(s) | 338, 374, 586 |
| BsiEI | CGRYCG | 1 cut(s) | 103 |
| BsiHKCI | CYCGRG | 1 cut(s) | 54 |
| BslFI | GGGAC | 2 cut(s) | 94, 98 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 28, 81, 184, 384, 440, 463, 505 |
| BsmAI | GTCTC | 2 cut(s) | 402, 553 |
| BsmBI | CGTCTC | 1 cut(s) | 402 |
| BsmFI | GGGAC | 2 cut(s) | 94, 98 |
| BsnI | GGCC | 2 cut(s) | 412, 572 |
| BsoBI | CYCGRG | 1 cut(s) | 54 |
| Bsp143I | GATC | 2 cut(s) | 142, 174 |
| BspANI | GGCC | 2 cut(s) | 412, 572 |
| BspCNI | CTCAG | 3 cut(s) | 412, 454, 488 |
| BspFNI | CGCG | 2 cut(s) | 582, 584 |
| BspLI | GGNNCC | 5 cut(s) | 86, 340, 376, 450, 588 |
| BspPI | GGATC | 2 cut(s) | 150, 169 |
| BspT107I | GGYRCC | 3 cut(s) | 338, 374, 586 |
| BsrBI | CCGCTC | 2 cut(s) | 82, 492 |
| BsrI | ACTGG | 1 cut(s) | 153 |
| BssECI | CCNNGG | 4 cut(s) | 27, 55, 276, 590 |
| BssMI | GATC | 2 cut(s) | 142, 174 |
| BssNI | GRCGYC | 4 cut(s) | 339, 375, 395, 524 |
| BssT1I | CCWWGG | 1 cut(s) | 27 |
| Bst2UI | CCWGG | 2 cut(s) | 353, 592 |
| Bst4CI | ACNGT | 3 cut(s) | 104, 500, 515 |
| BstACI | GRCGYC | 4 cut(s) | 339, 375, 395, 524 |
| BstC8I | GCNNGC | 3 cut(s) | 62, 312, 337 |
| BstDEI | CTNAG | 3 cut(s) | 399, 462, 475 |
| BstDSI | CCRYGG | 1 cut(s) | 276 |
| BstEII | GGTNACC | 1 cut(s) | 494 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 26 |
| BstF5I | GGATG | 1 cut(s) | 55 |
| BstFNI | CGCG | 2 cut(s) | 582, 584 |
| BstH2I | RGCGCY | 2 cut(s) | 342, 378 |
| BstHHI | GCGC | 3 cut(s) | 341, 377, 584 |
| BstKTI | GATC | 2 cut(s) | 145, 177 |
| BstMAI | GTCTC | 2 cut(s) | 402, 553 |
| BstMBI | GATC | 2 cut(s) | 142, 174 |
| BstMCI | CGRYCG | 1 cut(s) | 103 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 281, 418, 480, 489, 526 |
| BstNI | CCWGG | 2 cut(s) | 353, 592 |
| BstNSI | RCATGY | 1 cut(s) | 71 |
| BstPI | GGTNACC | 1 cut(s) | 494 |
| BstSCI | CCNGG | 2 cut(s) | 351, 590 |
| BstUI | CGCG | 2 cut(s) | 582, 584 |
| BstV1I | GCAGC | 4 cut(s) | 51, 245, 256, 348 |
| BstV2I | GAAGAC | 1 cut(s) | 516 |
| BstX2I | RGATCY | 1 cut(s) | 174 |
| BstYI | RGATCY | 1 cut(s) | 174 |
| BsuRI | GGCC | 2 cut(s) | 412, 572 |
| BtgI | CCRYGG | 1 cut(s) | 276 |
| BtsCI | GGATG | 1 cut(s) | 55 |
| BtsIMutI | CAGTG | 1 cut(s) | 314 |
| Cac8I | GCNNGC | 3 cut(s) | 62, 312, 337 |
| CaiI | CAGNNNCTG | 1 cut(s) | 316 |
| CfoI | GCGC | 3 cut(s) | 341, 377, 584 |
| Cfr13I | GGNCC | 3 cut(s) | 85, 410, 571 |
| CseI | GACGC | 2 cut(s) | 384, 532 |
| Csp6I | GTAC | 1 cut(s) | 304 |
| CviAII | CATG | 1 cut(s) | 68 |
| CviQI | GTAC | 1 cut(s) | 304 |
| DdeI | CTNAG | 3 cut(s) | 399, 462, 475 |
| DinI | GGCGCC | 2 cut(s) | 340, 376 |
| DpnI | GATC | 2 cut(s) | 144, 176 |
| DpnII | GATC | 2 cut(s) | 142, 174 |
| DriI | GACNNNNNGTC | 1 cut(s) | 106 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 106 |
| Eco130I | CCWWGG | 1 cut(s) | 27 |
| Eco47I | GGWCC | 1 cut(s) | 85 |
| Eco57I | CTGAAG | 2 cut(s) | 158, 164 |
| Eco88I | CYCGRG | 1 cut(s) | 54 |
| Eco91I | GGTNACC | 1 cut(s) | 494 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 26 |
| EcoO109I | RGGNCCY | 1 cut(s) | 85 |
| EcoO65I | GGTNACC | 1 cut(s) | 494 |
| EcoRII | CCWGG | 2 cut(s) | 351, 590 |
| EcoT14I | CCWWGG | 1 cut(s) | 27 |
| EgeI | GGCGCC | 2 cut(s) | 340, 376 |
| EheI | GGCGCC | 2 cut(s) | 340, 376 |
| ErhI | CCWWGG | 1 cut(s) | 27 |
| Esp3I | CGTCTC | 1 cut(s) | 402 |
| FaeI | CATG | 1 cut(s) | 71 |
| FaiI | YATR | 4 cut(s) | 69, 128, 405, 566 |
| FaqI | GGGAC | 2 cut(s) | 94, 98 |
| FatI | CATG | 1 cut(s) | 67 |
| FauI | CCCGC | 3 cut(s) | 75, 177, 587 |
| Fnu4HI | GCNGC | 9 cut(s) | 65, 259, 270, 273, 362, 484, 527, 570, 585 |
| FokI | GGATG | 1 cut(s) | 62 |
| Fsp4HI | GCNGC | 9 cut(s) | 65, 259, 270, 273, 362, 484, 527, 570, 585 |
| FspBI | CTAG | 2 cut(s) | 116, 503 |
| GlaI | GCGC | 3 cut(s) | 340, 376, 583 |
| GluI | GCNGC | 9 cut(s) | 65, 259, 270, 273, 362, 484, 527, 570, 585 |
| GsaI | CCCAGC | 1 cut(s) | 411 |
| GsuI | CTGGAG | 1 cut(s) | 170 |
| HaeII | RGCGCY | 2 cut(s) | 342, 378 |
| HaeIII | GGCC | 2 cut(s) | 412, 572 |
| HgaI | GACGC | 2 cut(s) | 384, 532 |
| HhaI | GCGC | 3 cut(s) | 341, 377, 584 |
| Hin1I | GRCGYC | 4 cut(s) | 339, 375, 395, 524 |
| Hin1II | CATG | 1 cut(s) | 71 |
| Hin6I | GCGC | 3 cut(s) | 339, 375, 582 |
| HinP1I | GCGC | 3 cut(s) | 339, 375, 582 |
| HinfI | GANTC | 2 cut(s) | 188, 428 |
| HphI | GGTGA | 2 cut(s) | 223, 506 |
| Hpy188III | TCNNGA | 2 cut(s) | 22, 163 |
| HpyAV | CCTTC | 4 cut(s) | 133, 188, 325, 364 |
| HpyCH4III | ACNGT | 3 cut(s) | 104, 500, 515 |
| HpyCH4V | TGCA | 4 cut(s) | 67, 261, 364, 557 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 281, 418, 480, 489, 526 |
| HpyF3I | CTNAG | 3 cut(s) | 399, 462, 475 |
| Hsp92I | GRCGYC | 4 cut(s) | 339, 375, 395, 524 |
| Hsp92II | CATG | 1 cut(s) | 71 |
| HspAI | GCGC | 3 cut(s) | 339, 375, 582 |
| KasI | GGCGCC | 2 cut(s) | 338, 374 |
| Kzo9I | GATC | 2 cut(s) | 142, 174 |
| LmnI | GCTCC | 1 cut(s) | 255 |
| Lsp1109I | GCAGC | 4 cut(s) | 51, 245, 256, 348 |
| LweI | GCATC | 3 cut(s) | 25, 34, 40 |
| MaeI | CTAG | 2 cut(s) | 116, 503 |
| MaeIII | GTNAC | 1 cut(s) | 494 |
| MalI | GATC | 2 cut(s) | 144, 176 |
| MbiI | CCGCTC | 2 cut(s) | 82, 492 |
| MboI | GATC | 2 cut(s) | 142, 174 |
| MboII | GAAGA | 1 cut(s) | 521 |
| MflI | RGATCY | 1 cut(s) | 174 |
| Mly113I | GGCGCC | 2 cut(s) | 339, 375 |
| MmeI | TCCRAC | 1 cut(s) | 201 |
| MslI | CAYNNNNRTG | 1 cut(s) | 592 |
| MspA1I | CMGCKG | 1 cut(s) | 184 |
| MspR9I | CCNGG | 2 cut(s) | 353, 592 |
| MvaI | CCWGG | 2 cut(s) | 353, 592 |
| MvnI | CGCG | 2 cut(s) | 582, 584 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 281, 418, 480, 489, 526 |
| NarI | GGCGCC | 2 cut(s) | 339, 375 |
| NdeII | GATC | 2 cut(s) | 142, 174 |
| NlaIII | CATG | 1 cut(s) | 71 |
| NlaIV | GGNNCC | 5 cut(s) | 86, 340, 376, 450, 588 |
| NmuCI | GTSAC | 1 cut(s) | 494 |
| NspI | RCATGY | 1 cut(s) | 71 |
| OliI | CACNNNNGTG | 1 cut(s) | 592 |
| PfeI | GAWTC | 2 cut(s) | 188, 428 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 384 |
| PkrI | GCNGC | 9 cut(s) | 66, 260, 271, 274, 363, 485, 528, 571, 586 |
| PluTI | GGCGCC | 2 cut(s) | 342, 378 |
| PpuMI | RGGWCCY | 1 cut(s) | 85 |
| Psp5II | RGGWCCY | 1 cut(s) | 85 |
| Psp6I | CCWGG | 2 cut(s) | 351, 590 |
| PspEI | GGTNACC | 1 cut(s) | 494 |
| PspFI | CCCAGC | 1 cut(s) | 407 |
| PspGI | CCWGG | 2 cut(s) | 351, 590 |
| PspN4I | GGNNCC | 5 cut(s) | 86, 340, 376, 450, 588 |
| PspPI | GGNCC | 3 cut(s) | 85, 410, 571 |
| PspPPI | RGGWCCY | 1 cut(s) | 85 |
| PstNI | CAGNNNCTG | 1 cut(s) | 316 |
| PsuI | RGATCY | 1 cut(s) | 174 |
| RsaI | GTAC | 1 cut(s) | 305 |
| RsaNI | GTAC | 1 cut(s) | 304 |
| RseI | CAYNNNNRTG | 1 cut(s) | 592 |
| SatI | GCNGC | 9 cut(s) | 65, 259, 270, 273, 362, 484, 527, 570, 585 |
| Sau3AI | GATC | 2 cut(s) | 142, 174 |
| Sau96I | GGNCC | 3 cut(s) | 85, 410, 571 |
| ScrFI | CCNGG | 2 cut(s) | 353, 592 |
| SfaNI | GCATC | 3 cut(s) | 25, 34, 40 |
| SfoI | GGCGCC | 2 cut(s) | 340, 376 |
| SinI | GGWCC | 1 cut(s) | 85 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 592 |
| SmlI | CTYRAG | 1 cut(s) | 89 |
| SmoI | CTYRAG | 1 cut(s) | 89 |
| SspDI | GGCGCC | 2 cut(s) | 338, 374 |
| SspMI | CTAG | 2 cut(s) | 116, 503 |
| StyD4I | CCNGG | 2 cut(s) | 351, 590 |
| StyI | CCWWGG | 1 cut(s) | 27 |
| TaaI | ACNGT | 3 cut(s) | 104, 500, 515 |
| TatI | WGTACW | 1 cut(s) | 303 |
| TauI | GCSGC | 5 cut(s) | 275, 486, 529, 572, 587 |
| TfiI | GAWTC | 2 cut(s) | 188, 428 |
| TscAI | CASTG | 1 cut(s) | 321 |
| TseFI | GTSAC | 1 cut(s) | 494 |
| TseI | GCWGC | 4 cut(s) | 64, 258, 269, 361 |
| Tsp45I | GTSAC | 1 cut(s) | 494 |
| TspGWI | ACGGA | 1 cut(s) | 278 |
| TspRI | CASTG | 1 cut(s) | 321 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 384 |
| VpaK11BI | GGWCC | 1 cut(s) | 85 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 26 |
| XceI | RCATGY | 1 cut(s) | 71 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 349 |
| XspI | CTAG | 2 cut(s) | 116, 503 |