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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 343 |
| AccB1I | GGYRCC | 2 cut(s) | 386, 448 |
| AccBSI | CCGCTC | 4 cut(s) | 202, 511, 538, 751 |
| AccII | CGCG | 3 cut(s) | 488, 571, 792 |
| AcoI | YGGCCR | 1 cut(s) | 153 |
| AcyI | GRCGYC | 3 cut(s) | 449, 653, 786 |
| AfaI | GTAC | 2 cut(s) | 5, 485 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 70, 303, 673 |
| AleI | CACNNNNGTG | 1 cut(s) | 111 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 500, 532 |
| AluBI | AGCT | 5 cut(s) | 603, 682, 715, 745, 799 |
| AluI | AGCT | 5 cut(s) | 603, 682, 715, 745, 799 |
| Alw21I | GWGCWC | 2 cut(s) | 684, 747 |
| Alw26I | GTCTC | 2 cut(s) | 351, 727 |
| Ama87I | CYCGRG | 2 cut(s) | 666, 746 |
| AoxI | GGCC | 7 cut(s) | 21, 153, 188, 294, 307, 405, 723 |
| ApeKI | GCWGC | 3 cut(s) | 179, 661, 828 |
| AspLEI | GCGC | 5 cut(s) | 319, 451, 490, 573, 816 |
| AspS9I | GGNCC | 6 cut(s) | 22, 144, 188, 294, 307, 406 |
| AsuC2I | CCSGG | 4 cut(s) | 44, 187, 667, 668 |
| AsuHPI | GGTGA | 3 cut(s) | 94, 125, 455 |
| AvaI | CYCGRG | 2 cut(s) | 666, 746 |
| AvaII | GGWCC | 1 cut(s) | 144 |
| BaeGI | GKGCMC | 1 cut(s) | 391 |
| BanI | GGYRCC | 2 cut(s) | 386, 448 |
| BanII | GRGCYC | 2 cut(s) | 684, 747 |
| Bbv12I | GWGCWC | 2 cut(s) | 684, 747 |
| BbvI | GCAGC | 3 cut(s) | 166, 673, 815 |
| BccI | CCATC | 2 cut(s) | 79, 113 |
| BceAI | ACGGC | 3 cut(s) | 168, 440, 594 |
| BcnI | CCSGG | 4 cut(s) | 44, 187, 667, 668 |
| BcoDI | GTCTC | 2 cut(s) | 351, 727 |
| BfaI | CTAG | 2 cut(s) | 320, 758 |
| BfmI | CTRYAG | 2 cut(s) | 33, 598 |
| BfoI | RGCGCY | 2 cut(s) | 320, 452 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 413 |
| BglII | AGATCT | 1 cut(s) | 700 |
| Bme1390I | CCNGG | 4 cut(s) | 44, 187, 667, 668 |
| Bme18I | GGWCC | 1 cut(s) | 144 |
| BmeT110I | CYCGRG | 2 cut(s) | 666, 746 |
| BmgT120I | GGNCC | 6 cut(s) | 22, 144, 188, 294, 307, 406 |
| BmiI | GGNNCC | 8 cut(s) | 75, 145, 146, 273, 308, 388, 417, 450 |
| BmrFI | CCNGG | 4 cut(s) | 44, 187, 667, 668 |
| BmsI | GCATC | 2 cut(s) | 81, 195 |
| BpmI | CTGGAG | 1 cut(s) | 689 |
| BpuEI | CTTGAG | 1 cut(s) | 668 |
| BpuMI | CCSGG | 4 cut(s) | 44, 187, 667, 668 |
| BsaHI | GRCGYC | 3 cut(s) | 449, 653, 786 |
| BsaJI | CCNNGG | 8 cut(s) | 9, 69, 109, 665, 666, 726, 762, 790 |
| BsaWI | WCCGGW | 1 cut(s) | 76 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 357, 387, 500, 530 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 70, 303, 673 |
| Bse118I | RCCGGY | 3 cut(s) | 155, 241, 412 |
| Bse1I | ACTGG | 4 cut(s) | 64, 100, 278, 741 |
| BseDI | CCNNGG | 8 cut(s) | 9, 69, 109, 665, 666, 726, 762, 790 |
| BseGI | GGATG | 1 cut(s) | 210 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 70, 303, 673 |
| BseMII | CTCAG | 2 cut(s) | 206, 242 |
| BseNI | ACTGG | 4 cut(s) | 64, 100, 278, 741 |
| BseRI | GAGGAG | 3 cut(s) | 383, 689, 692 |
| BseSI | GKGCMC | 1 cut(s) | 391 |
| BseX3I | CGGCCG | 1 cut(s) | 153 |
| BseXI | GCAGC | 3 cut(s) | 166, 673, 815 |
| BseYI | CCCAGC | 3 cut(s) | 24, 302, 541 |
| Bsh1236I | CGCG | 3 cut(s) | 488, 571, 792 |
| Bsh1285I | CGRYCG | 1 cut(s) | 156 |
| BshFI | GGCC | 7 cut(s) | 23, 155, 190, 296, 309, 407, 725 |
| BshNI | GGYRCC | 2 cut(s) | 386, 448 |
| BsiEI | CGRYCG | 1 cut(s) | 156 |
| BsiHKAI | GWGCWC | 2 cut(s) | 684, 747 |
| BsiHKCI | CYCGRG | 2 cut(s) | 666, 746 |
| BsiSI | CCGG | 8 cut(s) | 44, 77, 156, 186, 242, 334, 413, 667 |
| BslFI | GGGAC | 3 cut(s) | 88, 157, 768 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 70, 303, 673 |
| BsmAI | GTCTC | 2 cut(s) | 351, 727 |
| BsmFI | GGGAC | 3 cut(s) | 88, 157, 768 |
| BsnI | GGCC | 7 cut(s) | 23, 155, 190, 296, 309, 407, 725 |
| BsoBI | CYCGRG | 2 cut(s) | 666, 746 |
| Bsp1286I | GDGCHC | 3 cut(s) | 391, 684, 747 |
| Bsp143I | GATC | 2 cut(s) | 463, 700 |
| BspANI | GGCC | 7 cut(s) | 23, 155, 190, 296, 309, 407, 725 |
| BspCNI | CTCAG | 2 cut(s) | 205, 241 |
| BspFNI | CGCG | 3 cut(s) | 488, 571, 792 |
| BspHI | TCATGA | 1 cut(s) | 495 |
| BspLI | GGNNCC | 8 cut(s) | 75, 145, 146, 273, 308, 388, 417, 450 |
| BspT107I | GGYRCC | 2 cut(s) | 386, 448 |
| BsrBI | CCGCTC | 4 cut(s) | 202, 511, 538, 751 |
| BsrFI | RCCGGY | 3 cut(s) | 155, 241, 412 |
| BsrI | ACTGG | 4 cut(s) | 64, 100, 278, 741 |
| BssAI | RCCGGY | 3 cut(s) | 155, 241, 412 |
| BssECI | CCNNGG | 8 cut(s) | 9, 69, 109, 665, 666, 726, 762, 790 |
| BssMI | GATC | 2 cut(s) | 463, 700 |
| BssNI | GRCGYC | 3 cut(s) | 449, 653, 786 |
| BssT1I | CCWWGG | 3 cut(s) | 109, 726, 762 |
| Bst4CI | ACNGT | 3 cut(s) | 34, 340, 430 |
| Bst6I | CTCTTC | 1 cut(s) | 354 |
| BstACI | GRCGYC | 3 cut(s) | 449, 653, 786 |
| BstDEI | CTNAG | 2 cut(s) | 192, 228 |
| BstDSI | CCRYGG | 1 cut(s) | 790 |
| BstF5I | GGATG | 1 cut(s) | 210 |
| BstFNI | CGCG | 3 cut(s) | 488, 571, 792 |
| BstH2I | RGCGCY | 2 cut(s) | 320, 452 |
| BstHHI | GCGC | 5 cut(s) | 319, 451, 490, 573, 816 |
| BstKTI | GATC | 2 cut(s) | 466, 703 |
| BstMAI | GTCTC | 2 cut(s) | 351, 727 |
| BstMBI | GATC | 2 cut(s) | 463, 700 |
| BstMCI | CGRYCG | 1 cut(s) | 156 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 133, 293, 413, 485, 570 |
| BstSCI | CCNGG | 4 cut(s) | 42, 185, 665, 666 |
| BstSFI | CTRYAG | 2 cut(s) | 33, 598 |
| BstSLI | GKGCMC | 1 cut(s) | 391 |
| BstUI | CGCG | 3 cut(s) | 488, 571, 792 |
| BstV1I | GCAGC | 3 cut(s) | 166, 673, 815 |
| BstX2I | RGATCY | 1 cut(s) | 700 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 221 |
| BstYI | RGATCY | 1 cut(s) | 700 |
| BstZI | CGGCCG | 1 cut(s) | 153 |
| BsuRI | GGCC | 7 cut(s) | 23, 155, 190, 296, 309, 407, 725 |
| BtgI | CCRYGG | 1 cut(s) | 790 |
| BtgZI | GCGATG | 1 cut(s) | 104 |
| BtsCI | GGATG | 1 cut(s) | 210 |
| CciI | TCATGA | 1 cut(s) | 495 |
| CfoI | GCGC | 5 cut(s) | 319, 451, 490, 573, 816 |
| Cfr10I | RCCGGY | 3 cut(s) | 155, 241, 412 |
| Cfr13I | GGNCC | 6 cut(s) | 22, 144, 188, 294, 307, 406 |
| Cfr42I | CCGCGG | 1 cut(s) | 793 |
| Cfr9I | CCCGGG | 1 cut(s) | 666 |
| CseI | GACGC | 3 cut(s) | 171, 642, 794 |
| Csp6I | GTAC | 2 cut(s) | 4, 484 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 411, 446 |
| CviAII | CATG | 1 cut(s) | 496 |
| CviQI | GTAC | 2 cut(s) | 4, 484 |
| DdeI | CTNAG | 2 cut(s) | 192, 228 |
| DinI | GGCGCC | 1 cut(s) | 450 |
| DpnI | GATC | 2 cut(s) | 465, 702 |
| DpnII | GATC | 2 cut(s) | 463, 700 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 343 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 343 |
| EaeI | YGGCCR | 1 cut(s) | 153 |
| EagI | CGGCCG | 1 cut(s) | 153 |
| Eam1104I | CTCTTC | 1 cut(s) | 354 |
| EarI | CTCTTC | 1 cut(s) | 354 |
| EciI | GGCGGA | 3 cut(s) | 734, 755, 782 |
| Ecl136II | GAGCTC | 2 cut(s) | 682, 745 |
| EclXI | CGGCCG | 1 cut(s) | 153 |
| Eco130I | CCWWGG | 3 cut(s) | 109, 726, 762 |
| Eco24I | GRGCYC | 2 cut(s) | 684, 747 |
| Eco47I | GGWCC | 1 cut(s) | 144 |
| Eco52I | CGGCCG | 1 cut(s) | 153 |
| Eco53kI | GAGCTC | 2 cut(s) | 682, 745 |
| Eco88I | CYCGRG | 2 cut(s) | 666, 746 |
| EcoICRI | GAGCTC | 2 cut(s) | 682, 745 |
| EcoO109I | RGGNCCY | 2 cut(s) | 144, 406 |
| EcoT14I | CCWWGG | 3 cut(s) | 109, 726, 762 |
| EcoT38I | GRGCYC | 2 cut(s) | 684, 747 |
| EgeI | GGCGCC | 1 cut(s) | 450 |
| EheI | GGCGCC | 1 cut(s) | 450 |
| ErhI | CCWWGG | 3 cut(s) | 109, 726, 762 |
| FaeI | CATG | 1 cut(s) | 499 |
| FaiI | YATR | 4 cut(s) | 497, 566, 641, 780 |
| FaqI | GGGAC | 3 cut(s) | 88, 157, 768 |
| FatI | CATG | 1 cut(s) | 495 |
| FokI | GGATG | 1 cut(s) | 217 |
| FriOI | GRGCYC | 2 cut(s) | 684, 747 |
| FspBI | CTAG | 2 cut(s) | 320, 758 |
| GlaI | GCGC | 5 cut(s) | 318, 450, 489, 572, 815 |
| GsaI | CCCAGC | 3 cut(s) | 28, 306, 545 |
| GsuI | CTGGAG | 1 cut(s) | 689 |
| HaeII | RGCGCY | 2 cut(s) | 320, 452 |
| HaeIII | GGCC | 7 cut(s) | 23, 155, 190, 296, 309, 407, 725 |
| HapII | CCGG | 8 cut(s) | 44, 77, 156, 186, 242, 334, 413, 667 |
| HgaI | GACGC | 3 cut(s) | 171, 642, 794 |
| HhaI | GCGC | 5 cut(s) | 319, 451, 490, 573, 816 |
| Hin1I | GRCGYC | 3 cut(s) | 449, 653, 786 |
| Hin1II | CATG | 1 cut(s) | 499 |
| Hin6I | GCGC | 5 cut(s) | 317, 449, 488, 571, 814 |
| HinP1I | GCGC | 5 cut(s) | 317, 449, 488, 571, 814 |
| HincII | GTYRAC | 1 cut(s) | 460 |
| HindII | GTYRAC | 1 cut(s) | 460 |
| HindIII | AAGCTT | 1 cut(s) | 797 |
| HinfI | GANTC | 3 cut(s) | 344, 470, 546 |
| HpaII | CCGG | 8 cut(s) | 44, 77, 156, 186, 242, 334, 413, 667 |
| HphI | GGTGA | 3 cut(s) | 94, 125, 455 |
| Hpy166II | GTNNAC | 2 cut(s) | 40, 460 |
| Hpy188I | TCNGA | 3 cut(s) | 70, 195, 698 |
| Hpy188III | TCNNGA | 4 cut(s) | 350, 467, 496, 706 |
| Hpy8I | GTNNAC | 2 cut(s) | 40, 460 |
| Hpy99I | CGWCG | 3 cut(s) | 292, 356, 580 |
| HpyAV | CCTTC | 3 cut(s) | 190, 397, 497 |
| HpyCH4III | ACNGT | 3 cut(s) | 34, 340, 430 |
| HpyCH4V | TGCA | 2 cut(s) | 136, 422 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 133, 293, 413, 485, 570 |
| HpyF3I | CTNAG | 2 cut(s) | 192, 228 |
| Hsp92I | GRCGYC | 3 cut(s) | 449, 653, 786 |
| Hsp92II | CATG | 1 cut(s) | 499 |
| HspAI | GCGC | 5 cut(s) | 317, 449, 488, 571, 814 |
| KasI | GGCGCC | 1 cut(s) | 448 |
| KflI | GGGWCCC | 1 cut(s) | 144 |
| KroI | GCCGGC | 3 cut(s) | 155, 241, 412 |
| KroNI | GCCGGC | 3 cut(s) | 157, 243, 414 |
| KspI | CCGCGG | 1 cut(s) | 793 |
| Kzo9I | GATC | 2 cut(s) | 463, 700 |
| LmnI | GCTCC | 7 cut(s) | 163, 199, 421, 508, 679, 712, 742 |
| Lsp1109I | GCAGC | 3 cut(s) | 166, 673, 815 |
| LweI | GCATC | 2 cut(s) | 81, 195 |
| MaeI | CTAG | 2 cut(s) | 320, 758 |
| MaeIII | GTNAC | 2 cut(s) | 259, 630 |
| MalI | GATC | 2 cut(s) | 465, 702 |
| MbiI | CCGCTC | 4 cut(s) | 202, 511, 538, 751 |
| MboI | GATC | 2 cut(s) | 463, 700 |
| MboII | GAAGA | 3 cut(s) | 128, 371, 412 |
| MfeI | CAATTG | 1 cut(s) | 582 |
| MflI | RGATCY | 1 cut(s) | 700 |
| MhlI | GDGCHC | 3 cut(s) | 391, 684, 747 |
| MluCI | AATT | 1 cut(s) | 582 |
| Mly113I | GGCGCC | 1 cut(s) | 449 |
| MlyI | GAGTC | 2 cut(s) | 353, 464 |
| MroNI | GCCGGC | 3 cut(s) | 155, 241, 412 |
| MseI | TTAA | 1 cut(s) | 801 |
| MslI | CAYNNNNRTG | 1 cut(s) | 111 |
| MspA1I | CMGCKG | 2 cut(s) | 302, 792 |
| MspI | CCGG | 8 cut(s) | 44, 77, 156, 186, 242, 334, 413, 667 |
| MspR9I | CCNGG | 4 cut(s) | 44, 187, 667, 668 |
| MunI | CAATTG | 1 cut(s) | 582 |
| MvnI | CGCG | 3 cut(s) | 488, 571, 792 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 133, 293, 413, 485, 570 |
| NaeI | GCCGGC | 3 cut(s) | 157, 243, 414 |
| NarI | GGCGCC | 1 cut(s) | 449 |
| NciI | CCSGG | 4 cut(s) | 44, 187, 667, 668 |
| NdeII | GATC | 2 cut(s) | 463, 700 |
| NgoMIV | GCCGGC | 3 cut(s) | 155, 241, 412 |
| NlaIII | CATG | 1 cut(s) | 499 |
| NlaIV | GGNNCC | 8 cut(s) | 75, 145, 146, 273, 308, 388, 417, 450 |
| NmeAIII | GCCGAG | 3 cut(s) | 34, 505, 584 |
| NmuCI | GTSAC | 1 cut(s) | 259 |
| OliI | CACNNNNGTG | 1 cut(s) | 111 |
| PaeR7I | CTCGAG | 1 cut(s) | 746 |
| PagI | TCATGA | 1 cut(s) | 495 |
| PdiI | GCCGGC | 3 cut(s) | 157, 243, 414 |
| PfeI | GAWTC | 1 cut(s) | 546 |
| PleI | GAGTC | 2 cut(s) | 352, 464 |
| PluTI | GGCGCC | 1 cut(s) | 452 |
| PpsI | GAGTC | 2 cut(s) | 352, 464 |
| PpuMI | RGGWCCY | 1 cut(s) | 144 |
| Psp124BI | GAGCTC | 2 cut(s) | 684, 747 |
| Psp5II | RGGWCCY | 1 cut(s) | 144 |
| PspFI | CCCAGC | 3 cut(s) | 24, 302, 541 |
| PspN4I | GGNNCC | 8 cut(s) | 75, 145, 146, 273, 308, 388, 417, 450 |
| PspPI | GGNCC | 6 cut(s) | 22, 144, 188, 294, 307, 406 |
| PspPPI | RGGWCCY | 1 cut(s) | 144 |
| PspXI | VCTCGAGB | 1 cut(s) | 746 |
| PsuI | RGATCY | 1 cut(s) | 700 |
| RsaI | GTAC | 2 cut(s) | 5, 485 |
| RsaNI | GTAC | 2 cut(s) | 4, 484 |
| RseI | CAYNNNNRTG | 1 cut(s) | 111 |
| SacI | GAGCTC | 2 cut(s) | 684, 747 |
| SacII | CCGCGG | 1 cut(s) | 793 |
| SaqAI | TTAA | 1 cut(s) | 801 |
| Sau3AI | GATC | 2 cut(s) | 463, 700 |
| Sau96I | GGNCC | 6 cut(s) | 22, 144, 188, 294, 307, 406 |
| SchI | GAGTC | 2 cut(s) | 353, 464 |
| ScrFI | CCNGG | 4 cut(s) | 44, 187, 667, 668 |
| SduI | GDGCHC | 3 cut(s) | 391, 684, 747 |
| SfaNI | GCATC | 2 cut(s) | 81, 195 |
| SfcI | CTRYAG | 2 cut(s) | 33, 598 |
| SfoI | GGCGCC | 1 cut(s) | 450 |
| Sfr274I | CTCGAG | 1 cut(s) | 746 |
| Sfr303I | CCGCGG | 1 cut(s) | 793 |
| SgrBI | CCGCGG | 1 cut(s) | 793 |
| SinI | GGWCC | 1 cut(s) | 144 |
| SlaI | CTCGAG | 1 cut(s) | 746 |
| SmaI | CCCGGG | 1 cut(s) | 668 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 111 |
| SmlI | CTYRAG | 2 cut(s) | 683, 746 |
| SmoI | CTYRAG | 2 cut(s) | 683, 746 |
| Sse9I | AATT | 1 cut(s) | 582 |
| SspDI | GGCGCC | 1 cut(s) | 448 |
| SspMI | CTAG | 2 cut(s) | 320, 758 |
| SstI | GAGCTC | 2 cut(s) | 684, 747 |
| StyD4I | CCNGG | 4 cut(s) | 42, 185, 665, 666 |
| StyI | CCWWGG | 3 cut(s) | 109, 726, 762 |
| TaaI | ACNGT | 3 cut(s) | 34, 340, 430 |
| TaqI | TCGA | 1 cut(s) | 747 |
| TasI | AATT | 1 cut(s) | 582 |
| TauI | GCSGC | 8 cut(s) | 23, 97, 299, 302, 541, 653, 795, 814 |
| TfiI | GAWTC | 1 cut(s) | 546 |
| Tru1I | TTAA | 1 cut(s) | 801 |
| Tru9I | TTAA | 1 cut(s) | 801 |
| TseFI | GTSAC | 1 cut(s) | 259 |
| TseI | GCWGC | 3 cut(s) | 179, 661, 828 |
| Tsp45I | GTSAC | 1 cut(s) | 259 |
| TspDTI | ATGAA | 2 cut(s) | 484, 515 |
| TspMI | CCCGGG | 1 cut(s) | 666 |
| VpaK11BI | GGWCC | 1 cut(s) | 144 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 107, 733 |
| XhoI | CTCGAG | 1 cut(s) | 746 |
| XmaI | CCCGGG | 1 cut(s) | 666 |
| XspI | CTAG | 2 cut(s) | 320, 758 |