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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 1316 |
| Acc36I | ACCTGC | 1 cut(s) | 463 |
| AccB1I | GGYRCC | 5 cut(s) | 286, 1039, 1057, 1614, 1934 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 271, 351 |
| AccBSI | CCGCTC | 4 cut(s) | 1372, 1399, 1537, 1678 |
| AccII | CGCG | 5 cut(s) | 672, 687, 1074, 1319, 1343 |
| AclWI | GGATC | 1 cut(s) | 1156 |
| AcoI | YGGCCR | 2 cut(s) | 1746, 1800 |
| AcsI | RAATTY | 1 cut(s) | 300 |
| AcuI | CTGAAG | 4 cut(s) | 129, 173, 1550, 1760 |
| AcyI | GRCGYC | 5 cut(s) | 822, 1058, 1313, 1514, 1615 |
| AfaI | GTAC | 5 cut(s) | 428, 878, 1080, 1346, 1431 |
| AflIII | ACRYGT | 1 cut(s) | 348 |
| AgsI | TTSAA | 4 cut(s) | 299, 791, 1462, 1885 |
| AhlI | ACTAGT | 1 cut(s) | 439 |
| AjiI | CACGTC | 2 cut(s) | 1234, 1300 |
| AjnI | CCWGG | 8 cut(s) | 172, 264, 492, 915, 1416, 1683, 1793, 1836 |
| AleI | CACNNNNGTG | 1 cut(s) | 1178 |
| AluBI | AGCT | 9 cut(s) | 157, 187, 500, 508, 657, 750, 1543, 1690, 1711 |
| AluI | AGCT | 9 cut(s) | 157, 187, 500, 508, 657, 750, 1543, 1690, 1711 |
| Alw21I | GWGCWC | 3 cut(s) | 249, 502, 1545 |
| Alw26I | GTCTC | 4 cut(s) | 743, 863, 1304, 1317 |
| Alw44I | GTGCAC | 1 cut(s) | 245 |
| AlwI | GGATC | 1 cut(s) | 1156 |
| Ama87I | CYCGRG | 1 cut(s) | 1527 |
| ApaLI | GTGCAC | 1 cut(s) | 245 |
| ApeKI | GCWGC | 4 cut(s) | 44, 50, 92, 1640 |
| ApoI | RAATTY | 1 cut(s) | 300 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1183, 1215 |
| AspLEI | GCGC | 9 cut(s) | 370, 456, 931, 1060, 1074, 1101, 1617, 1912, 1973 |
| AspS9I | GGNCC | 6 cut(s) | 404, 549, 591, 1249, 1681, 1771 |
| AsuC2I | CCSGG | 4 cut(s) | 801, 886, 1069, 1589 |
| AsuHPI | GGTGA | 6 cut(s) | 193, 479, 1001, 1567, 1826, 1835 |
| AsuNHI | GCTAGC | 1 cut(s) | 889 |
| AvaI | CYCGRG | 1 cut(s) | 1527 |
| AvaII | GGWCC | 5 cut(s) | 404, 549, 591, 1681, 1771 |
| BaeGI | GKGCMC | 3 cut(s) | 249, 1479, 1939 |
| BanI | GGYRCC | 5 cut(s) | 286, 1039, 1057, 1614, 1934 |
| BanII | GRGCYC | 2 cut(s) | 502, 1545 |
| BauI | CACGAG | 1 cut(s) | 780 |
| BbsI | GAAGAC | 1 cut(s) | 1556 |
| Bbv12I | GWGCWC | 3 cut(s) | 249, 502, 1545 |
| BbvCI | CCTCAGC | 1 cut(s) | 1845 |
| BbvI | GCAGC | 4 cut(s) | 31, 37, 79, 1652 |
| BccI | CCATC | 2 cut(s) | 898, 987 |
| BceAI | ACGGC | 6 cut(s) | 801, 989, 1009, 1182, 1482, 1839 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1619, 1653 |
| BciT130I | CCWGG | 8 cut(s) | 174, 266, 494, 917, 1418, 1685, 1795, 1838 |
| BclI | TGATCA | 1 cut(s) | 1447 |
| BcnI | CCSGG | 4 cut(s) | 801, 886, 1069, 1589 |
| BcoDI | GTCTC | 4 cut(s) | 743, 863, 1304, 1317 |
| BcuI | ACTAGT | 1 cut(s) | 439 |
| BfoI | RGCGCY | 6 cut(s) | 371, 457, 932, 1061, 1618, 1913 |
| BfuAI | ACCTGC | 1 cut(s) | 463 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1799 |
| BlpI | GCTNAGC | 2 cut(s) | 897, 932 |
| Bme18I | GGWCC | 5 cut(s) | 404, 549, 591, 1681, 1771 |
| BmeT110I | CYCGRG | 1 cut(s) | 1527 |
| BmgBI | CACGTC | 2 cut(s) | 1234, 1300 |
| BmgT120I | GGNCC | 6 cut(s) | 404, 549, 591, 1249, 1681, 1771 |
| BmsI | GCATC | 6 cut(s) | 25, 124, 351, 1627, 1636, 1944 |
| BmtI | GCTAGC | 1 cut(s) | 893 |
| BpiI | GAAGAC | 1 cut(s) | 1556 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 200, 232, 1144, 1176 |
| BpmI | CTGGAG | 3 cut(s) | 1439, 1706, 1733 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1544, 1845 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 897, 932 |
| BpuEI | CTTGAG | 1 cut(s) | 502 |
| BpuMI | CCSGG | 4 cut(s) | 801, 886, 1069, 1589 |
| BsaHI | GRCGYC | 5 cut(s) | 822, 1058, 1313, 1514, 1615 |
| BsaI | GGTCTC | 2 cut(s) | 863, 1317 |
| BsaWI | WCCGGW | 1 cut(s) | 165 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 410, 440, 596, 626, 860, 890, 1316, 1346 |
| Bse1I | ACTGG | 4 cut(s) | 96, 545, 732, 1024 |
| Bse3DI | GCAATG | 1 cut(s) | 321 |
| BseBI | CCWGG | 8 cut(s) | 174, 266, 494, 917, 1418, 1685, 1795, 1838 |
| BseGI | GGATG | 4 cut(s) | 139, 1234, 1609, 1651 |
| BseMI | GCAATG | 1 cut(s) | 321 |
| BseMII | CTCAG | 8 cut(s) | 129, 179, 512, 840, 911, 1558, 1836, 1908 |
| BseNI | ACTGG | 4 cut(s) | 96, 545, 732, 1024 |
| BseRI | GAGGAG | 1 cut(s) | 1565 |
| BseSI | GKGCMC | 3 cut(s) | 249, 1479, 1939 |
| BseXI | GCAGC | 4 cut(s) | 31, 37, 79, 1652 |
| BseYI | CCCAGC | 2 cut(s) | 750, 1102 |
| Bsh1236I | CGCG | 5 cut(s) | 672, 687, 1074, 1319, 1343 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1440 |
| BshNI | GGYRCC | 5 cut(s) | 286, 1039, 1057, 1614, 1934 |
| BsiEI | CGRYCG | 1 cut(s) | 1440 |
| BsiHKAI | GWGCWC | 3 cut(s) | 249, 502, 1545 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1527 |
| BsiSI | CCGG | 5 cut(s) | 166, 800, 885, 1069, 1589 |
| BslFI | GGGAC | 5 cut(s) | 417, 562, 1030, 1694, 1711 |
| BsmAI | GTCTC | 4 cut(s) | 743, 863, 1304, 1317 |
| BsmBI | CGTCTC | 2 cut(s) | 743, 1304 |
| BsmFI | GGGAC | 5 cut(s) | 417, 562, 1030, 1694, 1711 |
| Bso31I | GGTCTC | 2 cut(s) | 863, 1317 |
| BsoBI | CYCGRG | 1 cut(s) | 1527 |
| Bsp1286I | GDGCHC | 5 cut(s) | 249, 502, 1479, 1545, 1939 |
| Bsp143I | GATC | 6 cut(s) | 510, 766, 852, 1148, 1447, 1738 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 897, 932 |
| Bsp68I | TCGCGA | 1 cut(s) | 672 |
| BspCNI | CTCAG | 8 cut(s) | 130, 180, 513, 841, 910, 1557, 1837, 1909 |
| BspFNI | CGCG | 5 cut(s) | 672, 687, 1074, 1319, 1343 |
| BspMI | ACCTGC | 1 cut(s) | 463 |
| BspOI | GCTAGC | 1 cut(s) | 893 |
| BspPI | GGATC | 1 cut(s) | 1156 |
| BspT107I | GGYRCC | 5 cut(s) | 286, 1039, 1057, 1614, 1934 |
| BspTNI | GGTCTC | 2 cut(s) | 863, 1317 |
| BsrBI | CCGCTC | 4 cut(s) | 1372, 1399, 1537, 1678 |
| BsrDI | GCAATG | 1 cut(s) | 321 |
| BsrI | ACTGG | 4 cut(s) | 96, 545, 732, 1024 |
| BssMI | GATC | 6 cut(s) | 510, 766, 852, 1148, 1447, 1738 |
| BssNI | GRCGYC | 5 cut(s) | 822, 1058, 1313, 1514, 1615 |
| BssSI | CACGAG | 1 cut(s) | 780 |
| BssT1I | CCWWGG | 3 cut(s) | 457, 1284, 1752 |
| Bst2BI | CACGAG | 1 cut(s) | 780 |
| Bst2UI | CCWGG | 8 cut(s) | 174, 266, 494, 917, 1418, 1685, 1795, 1838 |
| Bst4CI | ACNGT | 9 cut(s) | 202, 244, 412, 1096, 1246, 1367, 1441, 1634, 1815 |
| Bst6I | CTCTTC | 2 cut(s) | 672, 1218 |
| BstACI | GRCGYC | 5 cut(s) | 822, 1058, 1313, 1514, 1615 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1646 |
| BstDEI | CTNAG | 9 cut(s) | 138, 188, 521, 849, 897, 932, 1544, 1845, 1917 |
| BstDSI | CCRYGG | 2 cut(s) | 951, 1651 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1622 |
| BstF5I | GGATG | 4 cut(s) | 139, 1234, 1609, 1651 |
| BstFNI | CGCG | 5 cut(s) | 672, 687, 1074, 1319, 1343 |
| BstH2I | RGCGCY | 6 cut(s) | 371, 457, 932, 1061, 1618, 1913 |
| BstHHI | GCGC | 9 cut(s) | 370, 456, 931, 1060, 1074, 1101, 1617, 1912, 1973 |
| BstKTI | GATC | 6 cut(s) | 513, 769, 855, 1151, 1450, 1741 |
| BstMAI | GTCTC | 4 cut(s) | 743, 863, 1304, 1317 |
| BstMBI | GATC | 6 cut(s) | 510, 766, 852, 1148, 1447, 1738 |
| BstMCI | CGRYCG | 1 cut(s) | 1440 |
| BstNI | CCWGG | 8 cut(s) | 174, 266, 494, 917, 1418, 1685, 1795, 1838 |
| BstNSI | RCATGY | 1 cut(s) | 352 |
| BstSLI | GKGCMC | 3 cut(s) | 249, 1479, 1939 |
| BstUI | CGCG | 5 cut(s) | 672, 687, 1074, 1319, 1343 |
| BstV1I | GCAGC | 4 cut(s) | 31, 37, 79, 1652 |
| BstV2I | GAAGAC | 1 cut(s) | 1556 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 986 |
| BtgI | CCRYGG | 2 cut(s) | 951, 1651 |
| BtrI | CACGTC | 2 cut(s) | 1234, 1300 |
| BtsCI | GGATG | 4 cut(s) | 139, 1234, 1609, 1651 |
| BtsIMutI | CAGTG | 3 cut(s) | 103, 1101, 1372 |
| BtuMI | TCGCGA | 1 cut(s) | 672 |
| BveI | ACCTGC | 1 cut(s) | 463 |
| CfoI | GCGC | 9 cut(s) | 370, 456, 931, 1060, 1074, 1101, 1617, 1912, 1973 |
| Cfr13I | GGNCC | 6 cut(s) | 404, 549, 591, 1249, 1681, 1771 |
| CseI | GACGC | 2 cut(s) | 830, 1503 |
| Csp6I | GTAC | 5 cut(s) | 427, 877, 1079, 1345, 1430 |
| CviAII | CATG | 5 cut(s) | 349, 532, 845, 874, 964 |
| CviQI | GTAC | 5 cut(s) | 427, 877, 1079, 1345, 1430 |
| DdeI | CTNAG | 9 cut(s) | 138, 188, 521, 849, 897, 932, 1544, 1845, 1917 |
| DinI | GGCGCC | 2 cut(s) | 1059, 1616 |
| DpnI | GATC | 6 cut(s) | 512, 768, 854, 1150, 1449, 1740 |
| DpnII | GATC | 6 cut(s) | 510, 766, 852, 1148, 1447, 1738 |
| EaeI | YGGCCR | 2 cut(s) | 1746, 1800 |
| Eam1104I | CTCTTC | 2 cut(s) | 672, 1218 |
| EarI | CTCTTC | 2 cut(s) | 672, 1218 |
| EciI | GGCGGA | 5 cut(s) | 431, 727, 786, 1616, 1910 |
| Ecl136II | GAGCTC | 2 cut(s) | 500, 1543 |
| Eco130I | CCWWGG | 3 cut(s) | 457, 1284, 1752 |
| Eco147I | AGGCCT | 2 cut(s) | 215, 1156 |
| Eco24I | GRGCYC | 2 cut(s) | 502, 1545 |
| Eco31I | GGTCTC | 2 cut(s) | 863, 1317 |
| Eco47I | GGWCC | 5 cut(s) | 404, 549, 591, 1681, 1771 |
| Eco53kI | GAGCTC | 2 cut(s) | 500, 1543 |
| Eco57I | CTGAAG | 4 cut(s) | 129, 173, 1550, 1760 |
| Eco88I | CYCGRG | 1 cut(s) | 1527 |
| EcoICRI | GAGCTC | 2 cut(s) | 500, 1543 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1622 |
| EcoO109I | RGGNCCY | 3 cut(s) | 549, 1681, 1771 |
| EcoRII | CCWGG | 8 cut(s) | 172, 264, 492, 915, 1416, 1683, 1793, 1836 |
| EcoT14I | CCWWGG | 3 cut(s) | 457, 1284, 1752 |
| EcoT38I | GRGCYC | 2 cut(s) | 502, 1545 |
| EgeI | GGCGCC | 2 cut(s) | 1059, 1616 |
| EheI | GGCGCC | 2 cut(s) | 1059, 1616 |
| ErhI | CCWWGG | 3 cut(s) | 457, 1284, 1752 |
| Esp3I | CGTCTC | 2 cut(s) | 743, 1304 |
| FaeI | CATG | 5 cut(s) | 352, 535, 848, 877, 967 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1649, 1681 |
| FaqI | GGGAC | 5 cut(s) | 417, 562, 1030, 1694, 1711 |
| FatI | CATG | 5 cut(s) | 348, 531, 844, 873, 963 |
| FbaI | TGATCA | 1 cut(s) | 1447 |
| FokI | GGATG | 4 cut(s) | 146, 1241, 1616, 1658 |
| FriOI | GRGCYC | 2 cut(s) | 502, 1545 |
| GlaI | GCGC | 9 cut(s) | 369, 455, 930, 1059, 1073, 1100, 1616, 1911, 1972 |
| GsaI | CCCAGC | 2 cut(s) | 754, 1106 |
| GsuI | CTGGAG | 3 cut(s) | 1439, 1706, 1733 |
| HaeII | RGCGCY | 6 cut(s) | 371, 457, 932, 1061, 1618, 1913 |
| HapII | CCGG | 5 cut(s) | 166, 800, 885, 1069, 1589 |
| HgaI | GACGC | 2 cut(s) | 830, 1503 |
| HhaI | GCGC | 9 cut(s) | 370, 456, 931, 1060, 1074, 1101, 1617, 1912, 1973 |
| Hin1I | GRCGYC | 5 cut(s) | 822, 1058, 1313, 1514, 1615 |
| Hin1II | CATG | 5 cut(s) | 352, 535, 848, 877, 967 |
| Hin6I | GCGC | 9 cut(s) | 368, 454, 929, 1058, 1072, 1099, 1615, 1910, 1971 |
| HinP1I | GCGC | 9 cut(s) | 368, 454, 929, 1058, 1072, 1099, 1615, 1910, 1971 |
| HpaII | CCGG | 5 cut(s) | 166, 800, 885, 1069, 1589 |
| HphI | GGTGA | 6 cut(s) | 193, 479, 1001, 1567, 1826, 1835 |
| Hpy166II | GTNNAC | 6 cut(s) | 194, 205, 247, 478, 913, 1081 |
| Hpy188I | TCNGA | 6 cut(s) | 628, 701, 943, 1140, 1351, 1569 |
| Hpy188III | TCNNGA | 4 cut(s) | 20, 514, 671, 1167 |
| Hpy8I | GTNNAC | 6 cut(s) | 194, 205, 247, 478, 913, 1081 |
| Hpy99I | CGWCG | 5 cut(s) | 202, 613, 767, 1445, 1519 |
| HpyCH4III | ACNGT | 9 cut(s) | 202, 244, 412, 1096, 1246, 1367, 1441, 1634, 1815 |
| HpyCH4IV | ACGT | 4 cut(s) | 611, 1233, 1299, 1313 |
| HpyCH4V | TGCA | 2 cut(s) | 247, 1640 |
| HpyF3I | CTNAG | 9 cut(s) | 138, 188, 521, 849, 897, 932, 1544, 1845, 1917 |
| HpySE526I | ACGT | 4 cut(s) | 611, 1233, 1299, 1313 |
| Hsp92I | GRCGYC | 5 cut(s) | 822, 1058, 1313, 1514, 1615 |
| Hsp92II | CATG | 5 cut(s) | 352, 535, 848, 877, 967 |
| HspAI | GCGC | 9 cut(s) | 368, 454, 929, 1058, 1072, 1099, 1615, 1910, 1971 |
| KasI | GGCGCC | 2 cut(s) | 1057, 1614 |
| Ksp22I | TGATCA | 1 cut(s) | 1447 |
| Kzo9I | GATC | 6 cut(s) | 510, 766, 852, 1148, 1447, 1738 |
| LmnI | GCTCC | 9 cut(s) | 497, 505, 604, 1132, 1165, 1540, 1687, 1714, 1851 |
| Lsp1109I | GCAGC | 4 cut(s) | 31, 37, 79, 1652 |
| LweI | GCATC | 6 cut(s) | 25, 124, 351, 1627, 1636, 1944 |
| MaeII | ACGT | 4 cut(s) | 611, 1233, 1299, 1313 |
| MaeIII | GTNAC | 6 cut(s) | 461, 485, 803, 818, 989, 1555 |
| MalI | GATC | 6 cut(s) | 512, 768, 854, 1150, 1449, 1740 |
| MbiI | CCGCTC | 4 cut(s) | 1372, 1399, 1537, 1678 |
| MboI | GATC | 6 cut(s) | 510, 766, 852, 1148, 1447, 1738 |
| MboII | GAAGA | 7 cut(s) | 215, 686, 689, 1232, 1235, 1273, 1556 |
| MhlI | GDGCHC | 5 cut(s) | 249, 502, 1479, 1545, 1939 |
| MluCI | AATT | 2 cut(s) | 300, 1700 |
| Mly113I | GGCGCC | 2 cut(s) | 1058, 1615 |
| MlyI | GAGTC | 9 cut(s) | 149, 199, 493, 661, 1202, 1325, 1519, 1793, 1886 |
| MmeI | TCCRAC | 4 cut(s) | 606, 618, 1110, 1797 |
| MseI | TTAA | 3 cut(s) | 621, 1358, 1809 |
| MslI | CAYNNNNRTG | 2 cut(s) | 984, 1178 |
| MspA1I | CMGCKG | 7 cut(s) | 50, 230, 283, 1106, 1643, 1780, 1871 |
| MspI | CCGG | 5 cut(s) | 166, 800, 885, 1069, 1589 |
| MvaI | CCWGG | 8 cut(s) | 174, 266, 494, 917, 1418, 1685, 1795, 1838 |
| MvnI | CGCG | 5 cut(s) | 672, 687, 1074, 1319, 1343 |
| NarI | GGCGCC | 2 cut(s) | 1058, 1615 |
| NciI | CCSGG | 4 cut(s) | 801, 886, 1069, 1589 |
| NdeII | GATC | 6 cut(s) | 510, 766, 852, 1148, 1447, 1738 |
| NheI | GCTAGC | 1 cut(s) | 889 |
| NlaIII | CATG | 5 cut(s) | 352, 535, 848, 877, 967 |
| NmeAIII | GCCGAG | 1 cut(s) | 1828 |
| NmuCI | GTSAC | 4 cut(s) | 485, 818, 989, 1555 |
| NruI | TCGCGA | 1 cut(s) | 672 |
| NspI | RCATGY | 1 cut(s) | 352 |
| OliI | CACNNNNGTG | 1 cut(s) | 1178 |
| PceI | AGGCCT | 2 cut(s) | 215, 1156 |
| PciI | ACATGT | 1 cut(s) | 348 |
| PfeI | GAWTC | 3 cut(s) | 220, 527, 715 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 271, 351 |
| PleI | GAGTC | 9 cut(s) | 148, 198, 492, 661, 1202, 1325, 1519, 1792, 1885 |
| PluTI | GGCGCC | 2 cut(s) | 1061, 1618 |
| PpsI | GAGTC | 9 cut(s) | 148, 198, 492, 661, 1202, 1325, 1519, 1792, 1885 |
| PpuMI | RGGWCCY | 3 cut(s) | 549, 1681, 1771 |
| PscI | ACATGT | 1 cut(s) | 348 |
| Psp124BI | GAGCTC | 2 cut(s) | 502, 1545 |
| Psp5II | RGGWCCY | 3 cut(s) | 549, 1681, 1771 |
| Psp6I | CCWGG | 8 cut(s) | 172, 264, 492, 915, 1416, 1683, 1793, 1836 |
| PspFI | CCCAGC | 2 cut(s) | 750, 1102 |
| PspGI | CCWGG | 8 cut(s) | 172, 264, 492, 915, 1416, 1683, 1793, 1836 |
| PspPI | GGNCC | 6 cut(s) | 404, 549, 591, 1249, 1681, 1771 |
| PspPPI | RGGWCCY | 3 cut(s) | 549, 1681, 1771 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1337, 1369 |
| RruI | TCGCGA | 1 cut(s) | 672 |
| RsaI | GTAC | 5 cut(s) | 428, 878, 1080, 1346, 1431 |
| RsaNI | GTAC | 5 cut(s) | 427, 877, 1079, 1345, 1430 |
| RseI | CAYNNNNRTG | 2 cut(s) | 984, 1178 |
| SacI | GAGCTC | 2 cut(s) | 502, 1545 |
| SaqAI | TTAA | 3 cut(s) | 621, 1358, 1809 |
| Sau3AI | GATC | 6 cut(s) | 510, 766, 852, 1148, 1447, 1738 |
| Sau96I | GGNCC | 6 cut(s) | 404, 549, 591, 1249, 1681, 1771 |
| SchI | GAGTC | 9 cut(s) | 149, 199, 493, 661, 1202, 1325, 1519, 1793, 1886 |
| SduI | GDGCHC | 5 cut(s) | 249, 502, 1479, 1545, 1939 |
| SfaNI | GCATC | 6 cut(s) | 25, 124, 351, 1627, 1636, 1944 |
| SfoI | GGCGCC | 2 cut(s) | 1059, 1616 |
| SinI | GGWCC | 5 cut(s) | 404, 549, 591, 1681, 1771 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 984, 1178 |
| SmlI | CTYRAG | 1 cut(s) | 481 |
| SmoI | CTYRAG | 1 cut(s) | 481 |
| SpeI | ACTAGT | 1 cut(s) | 439 |
| Sse9I | AATT | 2 cut(s) | 300, 1700 |
| SseBI | AGGCCT | 2 cut(s) | 215, 1156 |
| SspDI | GGCGCC | 2 cut(s) | 1057, 1614 |
| SstI | GAGCTC | 2 cut(s) | 502, 1545 |
| StuI | AGGCCT | 2 cut(s) | 215, 1156 |
| StyI | CCWWGG | 3 cut(s) | 457, 1284, 1752 |
| TaaI | ACNGT | 9 cut(s) | 202, 244, 412, 1096, 1246, 1367, 1441, 1634, 1815 |
| TaiI | ACGT | 4 cut(s) | 614, 1236, 1302, 1316 |
| TaqI | TCGA | 7 cut(s) | 218, 513, 765, 855, 1151, 1436, 1517 |
| TasI | AATT | 2 cut(s) | 300, 1700 |
| TatI | WGTACW | 1 cut(s) | 426 |
| TfiI | GAWTC | 3 cut(s) | 220, 527, 715 |
| Tru1I | TTAA | 3 cut(s) | 621, 1358, 1809 |
| Tru9I | TTAA | 3 cut(s) | 621, 1358, 1809 |
| TscAI | CASTG | 3 cut(s) | 103, 1101, 1372 |
| TseFI | GTSAC | 4 cut(s) | 485, 818, 989, 1555 |
| TseI | GCWGC | 4 cut(s) | 44, 50, 92, 1640 |
| Tsp45I | GTSAC | 4 cut(s) | 485, 818, 989, 1555 |
| TspGWI | ACGGA | 1 cut(s) | 133 |
| TspRI | CASTG | 3 cut(s) | 103, 1101, 1372 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 271, 351 |
| VneI | GTGCAC | 1 cut(s) | 245 |
| VpaK11BI | GGWCC | 5 cut(s) | 404, 549, 591, 1681, 1771 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1622 |
| XapI | RAATTY | 1 cut(s) | 300 |
| XbaI | TCTAGA | 1 cut(s) | 19 |
| XceI | RCATGY | 1 cut(s) | 352 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 980, 1126 |
| ZraI | GACGTC | 1 cut(s) | 1314 |