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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 155 |
| Acc36I | ACCTGC | 1 cut(s) | 155 |
| Acc65I | GGTACC | 1 cut(s) | 653 |
| AccB1I | GGYRCC | 1 cut(s) | 653 |
| AccII | CGCG | 4 cut(s) | 233, 235, 554, 586 |
| AciI | CCGC | 6 cut(s) | 16, 26, 95, 394, 512, 584 |
| AcyI | GRCGYC | 1 cut(s) | 181 |
| AfaI | GTAC | 1 cut(s) | 655 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 261, 342, 508 |
| AjnI | CCWGG | 3 cut(s) | 90, 547, 623 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 143, 175, 347, 379 |
| AluBI | AGCT | 4 cut(s) | 127, 202, 342, 463 |
| AluI | AGCT | 4 cut(s) | 127, 202, 342, 463 |
| Alw21I | GWGCWC | 1 cut(s) | 536 |
| Alw26I | GTCTC | 1 cut(s) | 103 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 624 |
| AoxI | GGCC | 2 cut(s) | 333, 612 |
| ApeKI | GCWGC | 5 cut(s) | 28, 196, 199, 371, 428 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 570 |
| Asp718I | GGTACC | 1 cut(s) | 653 |
| AspLEI | GCGC | 2 cut(s) | 235, 554 |
| AspS9I | GGNCC | 2 cut(s) | 333, 545 |
| AsuHPI | GGTGA | 2 cut(s) | 30, 490 |
| AvaII | GGWCC | 1 cut(s) | 545 |
| BanI | GGYRCC | 1 cut(s) | 653 |
| Bbv12I | GWGCWC | 1 cut(s) | 536 |
| BbvI | GCAGC | 5 cut(s) | 15, 208, 211, 358, 415 |
| BccI | CCATC | 5 cut(s) | 115, 238, 585, 665, 666 |
| BceAI | ACGGC | 2 cut(s) | 239, 511 |
| BciT130I | CCWGG | 3 cut(s) | 92, 549, 625 |
| BclI | TGATCA | 1 cut(s) | 601 |
| BcoDI | GTCTC | 1 cut(s) | 103 |
| BfmI | CTRYAG | 4 cut(s) | 323, 375, 432, 616 |
| BfuAI | ACCTGC | 1 cut(s) | 155 |
| BisI | GCNGC | 5 cut(s) | 29, 197, 200, 372, 429 |
| BlpI | GCTNAGC | 1 cut(s) | 49 |
| BlsI | GCNGC | 5 cut(s) | 30, 198, 201, 373, 430 |
| Bme1390I | CCNGG | 3 cut(s) | 92, 549, 625 |
| Bme18I | GGWCC | 1 cut(s) | 545 |
| BmgT120I | GGNCC | 2 cut(s) | 333, 545 |
| BmiI | GGNNCC | 1 cut(s) | 655 |
| BmrFI | CCNGG | 3 cut(s) | 92, 549, 625 |
| BmsI | GCATC | 3 cut(s) | 328, 337, 495 |
| Bpu10I | CCTNAGC | 1 cut(s) | 664 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 49 |
| BsaHI | GRCGYC | 1 cut(s) | 181 |
| BsaI | GGTCTC | 1 cut(s) | 103 |
| BsaJI | CCNNGG | 3 cut(s) | 207, 609, 623 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 261, 342, 508 |
| Bse118I | RCCGGY | 1 cut(s) | 437 |
| Bse3DI | GCAATG | 1 cut(s) | 38 |
| BseBI | CCWGG | 3 cut(s) | 92, 549, 625 |
| BseDI | CCNNGG | 3 cut(s) | 207, 609, 623 |
| BseGI | GGATG | 6 cut(s) | 81, 107, 253, 418, 596, 677 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 261, 342, 508 |
| BseMI | GCAATG | 1 cut(s) | 38 |
| BseMII | CTCAG | 4 cut(s) | 63, 273, 661, 678 |
| BseRI | GAGGAG | 1 cut(s) | 224 |
| BseXI | GCAGC | 5 cut(s) | 15, 208, 211, 358, 415 |
| BseYI | CCCAGC | 1 cut(s) | 342 |
| Bsh1236I | CGCG | 4 cut(s) | 233, 235, 554, 586 |
| Bsh1285I | CGRYCG | 1 cut(s) | 398 |
| BshFI | GGCC | 2 cut(s) | 335, 614 |
| BshNI | GGYRCC | 1 cut(s) | 653 |
| BsiEI | CGRYCG | 1 cut(s) | 398 |
| BsiHKAI | GWGCWC | 1 cut(s) | 536 |
| BsiSI | CCGG | 1 cut(s) | 438 |
| BslFI | GGGAC | 2 cut(s) | 32, 608 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 261, 342, 508 |
| BsmAI | GTCTC | 1 cut(s) | 103 |
| BsmFI | GGGAC | 2 cut(s) | 32, 608 |
| BsnI | GGCC | 2 cut(s) | 335, 614 |
| Bso31I | GGTCTC | 1 cut(s) | 103 |
| Bsp1286I | GDGCHC | 1 cut(s) | 536 |
| Bsp143I | GATC | 2 cut(s) | 480, 601 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 49 |
| BspACI | CCGC | 6 cut(s) | 16, 26, 95, 394, 512, 584 |
| BspANI | GGCC | 2 cut(s) | 335, 614 |
| BspCNI | CTCAG | 4 cut(s) | 62, 274, 660, 677 |
| BspFNI | CGCG | 4 cut(s) | 233, 235, 554, 586 |
| BspLI | GGNNCC | 1 cut(s) | 655 |
| BspMI | ACCTGC | 1 cut(s) | 155 |
| BspT107I | GGYRCC | 1 cut(s) | 653 |
| BspTNI | GGTCTC | 1 cut(s) | 103 |
| BsrDI | GCAATG | 1 cut(s) | 38 |
| BsrFI | RCCGGY | 1 cut(s) | 437 |
| BssAI | RCCGGY | 1 cut(s) | 437 |
| BssECI | CCNNGG | 3 cut(s) | 207, 609, 623 |
| BssMI | GATC | 2 cut(s) | 480, 601 |
| BssNI | GRCGYC | 1 cut(s) | 181 |
| Bst2UI | CCWGG | 3 cut(s) | 92, 549, 625 |
| Bst4CI | ACNGT | 3 cut(s) | 13, 42, 379 |
| BstACI | GRCGYC | 1 cut(s) | 181 |
| BstC8I | GCNNGC | 2 cut(s) | 301, 510 |
| BstDEI | CTNAG | 4 cut(s) | 49, 282, 647, 664 |
| BstEII | GGTNACC | 1 cut(s) | 36 |
| BstF5I | GGATG | 6 cut(s) | 81, 107, 253, 418, 596, 677 |
| BstFNI | CGCG | 4 cut(s) | 233, 235, 554, 586 |
| BstHHI | GCGC | 2 cut(s) | 235, 554 |
| BstKTI | GATC | 2 cut(s) | 483, 604 |
| BstMAI | GTCTC | 1 cut(s) | 103 |
| BstMBI | GATC | 2 cut(s) | 480, 601 |
| BstMCI | CGRYCG | 1 cut(s) | 398 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 325, 434, 514, 523 |
| BstNI | CCWGG | 3 cut(s) | 92, 549, 625 |
| BstPI | GGTNACC | 1 cut(s) | 36 |
| BstSCI | CCNGG | 3 cut(s) | 90, 547, 623 |
| BstSFI | CTRYAG | 4 cut(s) | 323, 375, 432, 616 |
| BstUI | CGCG | 4 cut(s) | 233, 235, 554, 586 |
| BstV1I | GCAGC | 5 cut(s) | 15, 208, 211, 358, 415 |
| BsuRI | GGCC | 2 cut(s) | 335, 614 |
| BtsCI | GGATG | 6 cut(s) | 81, 107, 253, 418, 596, 677 |
| BtsIMutI | CAGTG | 1 cut(s) | 655 |
| BveI | ACCTGC | 1 cut(s) | 155 |
| Cac8I | GCNNGC | 2 cut(s) | 301, 510 |
| CaiI | CAGNNNCTG | 1 cut(s) | 624 |
| CfoI | GCGC | 2 cut(s) | 235, 554 |
| Cfr10I | RCCGGY | 1 cut(s) | 437 |
| Cfr13I | GGNCC | 2 cut(s) | 333, 545 |
| CseI | GACGC | 3 cut(s) | 121, 189, 239 |
| Csp6I | GTAC | 1 cut(s) | 654 |
| CviQI | GTAC | 1 cut(s) | 654 |
| DdeI | CTNAG | 4 cut(s) | 49, 282, 647, 664 |
| DpnI | GATC | 2 cut(s) | 482, 603 |
| DpnII | GATC | 2 cut(s) | 480, 601 |
| EciI | GGCGGA | 1 cut(s) | 527 |
| Eco147I | AGGCCT | 1 cut(s) | 614 |
| Eco31I | GGTCTC | 1 cut(s) | 103 |
| Eco47I | GGWCC | 1 cut(s) | 545 |
| Eco91I | GGTNACC | 1 cut(s) | 36 |
| EcoO65I | GGTNACC | 1 cut(s) | 36 |
| EcoRII | CCWGG | 3 cut(s) | 90, 547, 623 |
| FaiI | YATR | 3 cut(s) | 130, 149, 434 |
| FaqI | GGGAC | 2 cut(s) | 32, 608 |
| FauI | CCCGC | 2 cut(s) | 9, 591 |
| FbaI | TGATCA | 1 cut(s) | 601 |
| Fnu4HI | GCNGC | 5 cut(s) | 29, 197, 200, 372, 429 |
| FokI | GGATG | 5 cut(s) | 88, 94, 260, 425, 603 |
| Fsp4HI | GCNGC | 5 cut(s) | 29, 197, 200, 372, 429 |
| GlaI | GCGC | 2 cut(s) | 234, 553 |
| GluI | GCNGC | 5 cut(s) | 29, 197, 200, 372, 429 |
| GsaI | CCCAGC | 1 cut(s) | 346 |
| HaeIII | GGCC | 2 cut(s) | 335, 614 |
| HapII | CCGG | 1 cut(s) | 438 |
| HgaI | GACGC | 3 cut(s) | 121, 189, 239 |
| HhaI | GCGC | 2 cut(s) | 235, 554 |
| Hin1I | GRCGYC | 1 cut(s) | 181 |
| Hin6I | GCGC | 2 cut(s) | 233, 552 |
| HinP1I | GCGC | 2 cut(s) | 233, 552 |
| HincII | GTYRAC | 2 cut(s) | 142, 420 |
| HindII | GTYRAC | 2 cut(s) | 142, 420 |
| HpaII | CCGG | 1 cut(s) | 438 |
| HphI | GGTGA | 2 cut(s) | 30, 490 |
| Hpy166II | GTNNAC | 5 cut(s) | 142, 220, 229, 420, 545 |
| Hpy188I | TCNGA | 2 cut(s) | 208, 610 |
| Hpy188III | TCNNGA | 1 cut(s) | 457 |
| Hpy8I | GTNNAC | 5 cut(s) | 142, 220, 229, 420, 545 |
| Hpy99I | CGWCG | 2 cut(s) | 137, 183 |
| HpyAV | CCTTC | 9 cut(s) | 64, 148, 349, 394, 418, 466, 487, 533, 560 |
| HpyCH4III | ACNGT | 3 cut(s) | 13, 42, 379 |
| HpyCH4V | TGCA | 4 cut(s) | 31, 271, 508, 559 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 325, 434, 514, 523 |
| HpyF3I | CTNAG | 4 cut(s) | 49, 282, 647, 664 |
| Hsp92I | GRCGYC | 1 cut(s) | 181 |
| HspAI | GCGC | 2 cut(s) | 233, 552 |
| KpnI | GGTACC | 1 cut(s) | 657 |
| Ksp22I | TGATCA | 1 cut(s) | 601 |
| Kzo9I | GATC | 2 cut(s) | 480, 601 |
| LmnI | GCTCC | 1 cut(s) | 514 |
| Lsp1109I | GCAGC | 5 cut(s) | 15, 208, 211, 358, 415 |
| LweI | GCATC | 3 cut(s) | 328, 337, 495 |
| MaeIII | GTNAC | 1 cut(s) | 36 |
| MalI | GATC | 2 cut(s) | 482, 603 |
| MboI | GATC | 2 cut(s) | 480, 601 |
| MboII | GAAGA | 2 cut(s) | 163, 184 |
| MhlI | GDGCHC | 1 cut(s) | 536 |
| MroXI | GAANNNNTTC | 1 cut(s) | 570 |
| MseI | TTAA | 1 cut(s) | 390 |
| MspA1I | CMGCKG | 1 cut(s) | 28 |
| MspI | CCGG | 1 cut(s) | 438 |
| MspR9I | CCNGG | 3 cut(s) | 92, 549, 625 |
| MvaI | CCWGG | 3 cut(s) | 92, 549, 625 |
| MvnI | CGCG | 4 cut(s) | 233, 235, 554, 586 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 325, 434, 514, 523 |
| NdeII | GATC | 2 cut(s) | 480, 601 |
| NlaIV | GGNNCC | 1 cut(s) | 655 |
| NmeAIII | GCCGAG | 1 cut(s) | 361 |
| NmuCI | GTSAC | 1 cut(s) | 36 |
| PaqCI | CACCTGC | 1 cut(s) | 155 |
| PceI | AGGCCT | 1 cut(s) | 614 |
| PdmI | GAANNNNTTC | 1 cut(s) | 570 |
| PkrI | GCNGC | 5 cut(s) | 30, 198, 201, 373, 430 |
| Psp6I | CCWGG | 3 cut(s) | 90, 547, 623 |
| PspEI | GGTNACC | 1 cut(s) | 36 |
| PspFI | CCCAGC | 1 cut(s) | 342 |
| PspGI | CCWGG | 3 cut(s) | 90, 547, 623 |
| PspN4I | GGNNCC | 1 cut(s) | 655 |
| PspPI | GGNCC | 2 cut(s) | 333, 545 |
| PstNI | CAGNNNCTG | 1 cut(s) | 624 |
| RsaI | GTAC | 1 cut(s) | 655 |
| RsaNI | GTAC | 1 cut(s) | 654 |
| SaqAI | TTAA | 1 cut(s) | 390 |
| SatI | GCNGC | 5 cut(s) | 29, 197, 200, 372, 429 |
| Sau3AI | GATC | 2 cut(s) | 480, 601 |
| Sau96I | GGNCC | 2 cut(s) | 333, 545 |
| ScrFI | CCNGG | 3 cut(s) | 92, 549, 625 |
| SduI | GDGCHC | 1 cut(s) | 536 |
| SfaNI | GCATC | 3 cut(s) | 328, 337, 495 |
| SfcI | CTRYAG | 4 cut(s) | 323, 375, 432, 616 |
| SinI | GGWCC | 1 cut(s) | 545 |
| SseBI | AGGCCT | 1 cut(s) | 614 |
| SsiI | CCGC | 6 cut(s) | 16, 26, 95, 394, 512, 584 |
| StuI | AGGCCT | 1 cut(s) | 614 |
| StyD4I | CCNGG | 3 cut(s) | 90, 547, 623 |
| TaaI | ACNGT | 3 cut(s) | 13, 42, 379 |
| TaqI | TCGA | 5 cut(s) | 135, 305, 398, 456, 483 |
| Tru1I | TTAA | 1 cut(s) | 390 |
| Tru9I | TTAA | 1 cut(s) | 390 |
| TscAI | CASTG | 1 cut(s) | 655 |
| TseFI | GTSAC | 1 cut(s) | 36 |
| TseI | GCWGC | 5 cut(s) | 28, 196, 199, 371, 428 |
| Tsp45I | GTSAC | 1 cut(s) | 36 |
| TspDTI | ATGAA | 2 cut(s) | 92, 164 |
| TspRI | CASTG | 1 cut(s) | 655 |
| VpaK11BI | GGWCC | 1 cut(s) | 545 |
| XmnI | GAANNNNTTC | 1 cut(s) | 570 |