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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 77 |
| AccB1I | GGYRCC | 1 cut(s) | 77 |
| AccBSI | CCGCTC | 1 cut(s) | 194 |
| AcoI | YGGCCR | 1 cut(s) | 18 |
| AcsI | RAATTY | 1 cut(s) | 230 |
| AfaI | GTAC | 2 cut(s) | 79, 143 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 23, 126, 295, 296 |
| AgsI | TTSAA | 1 cut(s) | 133 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 284 |
| AoxI | GGCC | 1 cut(s) | 18 |
| ApeKI | GCWGC | 1 cut(s) | 179 |
| ApoI | RAATTY | 1 cut(s) | 230 |
| Asp718I | GGTACC | 1 cut(s) | 77 |
| AspLEI | GCGC | 1 cut(s) | 254 |
| AspS9I | GGNCC | 3 cut(s) | 159, 300, 341 |
| AsuHPI | GGTGA | 1 cut(s) | 239 |
| AvaII | GGWCC | 3 cut(s) | 159, 300, 341 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 69, 102 |
| BanI | GGYRCC | 1 cut(s) | 77 |
| BbvI | GCAGC | 1 cut(s) | 166 |
| BccI | CCATC | 1 cut(s) | 317 |
| BceAI | ACGGC | 1 cut(s) | 104 |
| BfoI | RGCGCY | 1 cut(s) | 255 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 56 |
| BisI | GCNGC | 5 cut(s) | 5, 114, 117, 180, 294 |
| BlsI | GCNGC | 5 cut(s) | 6, 115, 118, 181, 295 |
| Bme18I | GGWCC | 3 cut(s) | 159, 300, 341 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 284 |
| BmgT120I | GGNCC | 3 cut(s) | 159, 300, 341 |
| BmiI | GGNNCC | 5 cut(s) | 15, 79, 160, 301, 342 |
| BsaJI | CCNNGG | 2 cut(s) | 211, 314 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 23, 126, 295, 296 |
| Bse118I | RCCGGY | 1 cut(s) | 7 |
| BseDI | CCNNGG | 2 cut(s) | 211, 314 |
| BseGI | GGATG | 2 cut(s) | 111, 328 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 23, 126, 295, 296 |
| BseX3I | CGGCCG | 1 cut(s) | 18 |
| BseXI | GCAGC | 1 cut(s) | 166 |
| BsgI | GTGCAG | 1 cut(s) | 165 |
| Bsh1285I | CGRYCG | 2 cut(s) | 21, 265 |
| BshFI | GGCC | 1 cut(s) | 20 |
| BshNI | GGYRCC | 1 cut(s) | 77 |
| BsiEI | CGRYCG | 2 cut(s) | 21, 265 |
| BsiSI | CCGG | 3 cut(s) | 8, 17, 151 |
| BsiWI | CGTACG | 1 cut(s) | 141 |
| BslFI | GGGAC | 4 cut(s) | 172, 272, 291, 313 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 23, 126, 295, 296 |
| BsmFI | GGGAC | 4 cut(s) | 172, 272, 291, 313 |
| BsmI | GAATGC | 2 cut(s) | 52, 275 |
| BsnI | GGCC | 1 cut(s) | 20 |
| Bsp143I | GATC | 1 cut(s) | 262 |
| BspANI | GGCC | 1 cut(s) | 20 |
| BspLI | GGNNCC | 5 cut(s) | 15, 79, 160, 301, 342 |
| BspT107I | GGYRCC | 1 cut(s) | 77 |
| BsrBI | CCGCTC | 1 cut(s) | 194 |
| BsrFI | RCCGGY | 1 cut(s) | 7 |
| BssAI | RCCGGY | 1 cut(s) | 7 |
| BssECI | CCNNGG | 2 cut(s) | 211, 314 |
| BssMI | GATC | 1 cut(s) | 262 |
| BssT1I | CCWWGG | 1 cut(s) | 211 |
| Bst4CI | ACNGT | 3 cut(s) | 77, 146, 167 |
| BstDSI | CCRYGG | 1 cut(s) | 314 |
| BstF5I | GGATG | 2 cut(s) | 111, 328 |
| BstH2I | RGCGCY | 1 cut(s) | 255 |
| BstHHI | GCGC | 1 cut(s) | 254 |
| BstKTI | GATC | 1 cut(s) | 265 |
| BstMBI | GATC | 1 cut(s) | 262 |
| BstMCI | CGRYCG | 2 cut(s) | 21, 265 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 56, 216 |
| BstV1I | GCAGC | 1 cut(s) | 166 |
| BstZI | CGGCCG | 1 cut(s) | 18 |
| BsuRI | GGCC | 1 cut(s) | 20 |
| BtgI | CCRYGG | 1 cut(s) | 314 |
| BtsCI | GGATG | 2 cut(s) | 111, 328 |
| CfoI | GCGC | 1 cut(s) | 254 |
| Cfr10I | RCCGGY | 1 cut(s) | 7 |
| Cfr13I | GGNCC | 3 cut(s) | 159, 300, 341 |
| Csp6I | GTAC | 2 cut(s) | 78, 142 |
| CviJI | RGCY | 2 cut(s) | 20, 260 |
| CviKI_1 | RGCY | 2 cut(s) | 20, 260 |
| CviQI | GTAC | 2 cut(s) | 78, 142 |
| DpnI | GATC | 1 cut(s) | 264 |
| DpnII | GATC | 1 cut(s) | 262 |
| DriI | GACNNNNNGTC | 1 cut(s) | 284 |
| EaeI | YGGCCR | 1 cut(s) | 18 |
| EagI | CGGCCG | 1 cut(s) | 18 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 284 |
| EciI | GGCGGA | 2 cut(s) | 118, 186 |
| EclXI | CGGCCG | 1 cut(s) | 18 |
| Eco130I | CCWWGG | 1 cut(s) | 211 |
| Eco47I | GGWCC | 3 cut(s) | 159, 300, 341 |
| Eco52I | CGGCCG | 1 cut(s) | 18 |
| EcoO109I | RGGNCCY | 1 cut(s) | 300 |
| EcoT14I | CCWWGG | 1 cut(s) | 211 |
| ErhI | CCWWGG | 1 cut(s) | 211 |
| FaiI | YATR | 2 cut(s) | 201, 246 |
| FaqI | GGGAC | 4 cut(s) | 172, 272, 291, 313 |
| FauI | CCCGC | 4 cut(s) | 31, 88, 212, 289 |
| Fnu4HI | GCNGC | 5 cut(s) | 5, 114, 117, 180, 294 |
| FokI | GGATG | 2 cut(s) | 118, 335 |
| Fsp4HI | GCNGC | 5 cut(s) | 5, 114, 117, 180, 294 |
| GlaI | GCGC | 1 cut(s) | 253 |
| GluI | GCNGC | 5 cut(s) | 5, 114, 117, 180, 294 |
| HaeII | RGCGCY | 1 cut(s) | 255 |
| HaeIII | GGCC | 1 cut(s) | 20 |
| HapII | CCGG | 3 cut(s) | 8, 17, 151 |
| HhaI | GCGC | 1 cut(s) | 254 |
| Hin6I | GCGC | 1 cut(s) | 252 |
| HinP1I | GCGC | 1 cut(s) | 252 |
| HincII | GTYRAC | 1 cut(s) | 88 |
| HindII | GTYRAC | 1 cut(s) | 88 |
| HinfI | GANTC | 4 cut(s) | 53, 205, 236, 279 |
| HpaII | CCGG | 3 cut(s) | 8, 17, 151 |
| HphI | GGTGA | 1 cut(s) | 239 |
| Hpy166II | GTNNAC | 1 cut(s) | 88 |
| Hpy188I | TCNGA | 1 cut(s) | 345 |
| Hpy188III | TCNNGA | 1 cut(s) | 266 |
| Hpy8I | GTNNAC | 1 cut(s) | 88 |
| Hpy99I | CGWCG | 5 cut(s) | 26, 77, 142, 349, 362 |
| HpyAV | CCTTC | 2 cut(s) | 313, 313 |
| HpyCH4III | ACNGT | 3 cut(s) | 77, 146, 167 |
| HpyCH4IV | ACGT | 2 cut(s) | 140, 360 |
| HpyCH4V | TGCA | 1 cut(s) | 182 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 56, 216 |
| HpySE526I | ACGT | 2 cut(s) | 140, 360 |
| HspAI | GCGC | 1 cut(s) | 252 |
| KpnI | GGTACC | 1 cut(s) | 81 |
| Kzo9I | GATC | 1 cut(s) | 262 |
| LmnI | GCTCC | 1 cut(s) | 249 |
| LpnPI | CCDG | 4 cut(s) | 21, 30, 164, 303 |
| Lsp1109I | GCAGC | 1 cut(s) | 166 |
| MaeII | ACGT | 2 cut(s) | 140, 360 |
| MalI | GATC | 1 cut(s) | 264 |
| MbiI | CCGCTC | 1 cut(s) | 194 |
| MboI | GATC | 1 cut(s) | 262 |
| MluCI | AATT | 1 cut(s) | 230 |
| MlyI | GAGTC | 3 cut(s) | 62, 245, 273 |
| MnlI | CCTC | 3 cut(s) | 85, 268, 342 |
| MspI | CCGG | 3 cut(s) | 8, 17, 151 |
| Mva1269I | GAATGC | 2 cut(s) | 52, 275 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 56, 216 |
| NdeII | GATC | 1 cut(s) | 262 |
| NlaIV | GGNNCC | 5 cut(s) | 15, 79, 160, 301, 342 |
| NmeAIII | GCCGAG | 1 cut(s) | 76 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 117, 344 |
| PctI | GAATGC | 2 cut(s) | 52, 275 |
| PfeI | GAWTC | 1 cut(s) | 205 |
| Pfl23II | CGTACG | 1 cut(s) | 141 |
| PkrI | GCNGC | 5 cut(s) | 6, 115, 118, 181, 295 |
| Ple19I | CGATCG | 1 cut(s) | 265 |
| PleI | GAGTC | 3 cut(s) | 61, 244, 273 |
| PpsI | GAGTC | 3 cut(s) | 61, 244, 273 |
| PpuMI | RGGWCCY | 1 cut(s) | 300 |
| Psp5II | RGGWCCY | 1 cut(s) | 300 |
| PspLI | CGTACG | 1 cut(s) | 141 |
| PspN4I | GGNNCC | 5 cut(s) | 15, 79, 160, 301, 342 |
| PspPI | GGNCC | 3 cut(s) | 159, 300, 341 |
| PspPPI | RGGWCCY | 1 cut(s) | 300 |
| PvuI | CGATCG | 1 cut(s) | 265 |
| RsaI | GTAC | 2 cut(s) | 79, 143 |
| RsaNI | GTAC | 2 cut(s) | 78, 142 |
| SatI | GCNGC | 5 cut(s) | 5, 114, 117, 180, 294 |
| Sau3AI | GATC | 1 cut(s) | 262 |
| Sau96I | GGNCC | 3 cut(s) | 159, 300, 341 |
| SchI | GAGTC | 3 cut(s) | 62, 245, 273 |
| SetI | ASST | 3 cut(s) | 143, 305, 363 |
| SgrAI | CRCCGGYG | 1 cut(s) | 7 |
| SinI | GGWCC | 3 cut(s) | 159, 300, 341 |
| Sse9I | AATT | 1 cut(s) | 230 |
| StyI | CCWWGG | 1 cut(s) | 211 |
| TaaI | ACNGT | 3 cut(s) | 77, 146, 167 |
| TaiI | ACGT | 2 cut(s) | 143, 363 |
| TaqI | TCGA | 1 cut(s) | 265 |
| TasI | AATT | 1 cut(s) | 230 |
| TauI | GCSGC | 4 cut(s) | 7, 116, 119, 296 |
| TfiI | GAWTC | 1 cut(s) | 205 |
| TseI | GCWGC | 1 cut(s) | 179 |
| TspDTI | ATGAA | 1 cut(s) | 122 |
| TspGWI | ACGGA | 2 cut(s) | 272, 331 |
| VpaK11BI | GGWCC | 3 cut(s) | 159, 300, 341 |
| XapI | RAATTY | 1 cut(s) | 230 |