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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1250 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 1654 |
| AatII | GACGTC | 2 cut(s) | 738, 1724 |
| Acc16I | TGCGCA | 1 cut(s) | 723 |
| Acc36I | ACCTGC | 1 cut(s) | 1250 |
| Acc65I | GGTACC | 1 cut(s) | 288 |
| AccB1I | GGYRCC | 4 cut(s) | 183, 288, 630, 2042 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1973 |
| AccI | GTMKAC | 2 cut(s) | 1125, 1949 |
| AccII | CGCG | 5 cut(s) | 402, 774, 821, 2068, 2093 |
| AccIII | TCCGGA | 1 cut(s) | 1701 |
| AclWI | GGATC | 1 cut(s) | 811 |
| AcoI | YGGCCR | 3 cut(s) | 1519, 1983, 2080 |
| AcsI | RAATTY | 2 cut(s) | 389, 1017 |
| AcuI | CTGAAG | 4 cut(s) | 150, 962, 1713, 1895 |
| AcyI | GRCGYC | 5 cut(s) | 631, 735, 777, 1721, 2115 |
| AdeI | CACNNNGTG | 1 cut(s) | 1746 |
| AfaI | GTAC | 4 cut(s) | 119, 190, 290, 1537 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 16, 1289, 1528, 1545, 1819, 1893, 1973 |
| AflII | CTTAAG | 1 cut(s) | 89 |
| AflIII | ACRYGT | 3 cut(s) | 528, 679, 1029 |
| AgsI | TTSAA | 9 cut(s) | 397, 593, 743, 791, 1054, 1267, 1583, 1597, 2002 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 2119 |
| AjiI | CACGTC | 1 cut(s) | 202 |
| AjnI | CCWGG | 2 cut(s) | 690, 1812 |
| AleI | CACNNNNGTG | 1 cut(s) | 2109 |
| Alw21I | GWGCWC | 2 cut(s) | 32, 930 |
| Alw44I | GTGCAC | 1 cut(s) | 926 |
| AlwI | GGATC | 1 cut(s) | 811 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 455, 985 |
| Ama87I | CYCGRG | 2 cut(s) | 1402, 1409 |
| Aor13HI | TCCGGA | 1 cut(s) | 1701 |
| AoxI | GGCC | 9 cut(s) | 7, 1435, 1519, 1575, 1624, 1891, 1920, 1983, 2080 |
| ApaLI | GTGCAC | 1 cut(s) | 926 |
| ApeKI | GCWGC | 7 cut(s) | 707, 964, 1398, 1443, 1672, 1843, 1979 |
| ApoI | RAATTY | 2 cut(s) | 389, 1017 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 392, 588 |
| Asp718I | GGTACC | 1 cut(s) | 288 |
| AspLEI | GCGC | 8 cut(s) | 349, 402, 444, 633, 724, 1569, 1843, 2070 |
| AspS9I | GGNCC | 3 cut(s) | 1330, 1488, 1891 |
| AsuC2I | CCSGG | 2 cut(s) | 1290, 1307 |
| AsuNHI | GCTAGC | 2 cut(s) | 335, 695 |
| AvaI | CYCGRG | 2 cut(s) | 1402, 1409 |
| AvaII | GGWCC | 2 cut(s) | 1330, 1488 |
| BaeGI | GKGCMC | 3 cut(s) | 930, 1282, 2047 |
| BalI | TGGCCA | 1 cut(s) | 1521 |
| BanI | GGYRCC | 4 cut(s) | 183, 288, 630, 2042 |
| BauI | CACGAG | 3 cut(s) | 929, 1275, 1631 |
| BbsI | GAAGAC | 2 cut(s) | 363, 1461 |
| Bbv12I | GWGCWC | 2 cut(s) | 32, 930 |
| BbvI | GCAGC | 7 cut(s) | 694, 951, 1410, 1430, 1684, 1855, 1966 |
| BccI | CCATC | 8 cut(s) | 10, 33, 272, 1547, 1814, 2016, 2094, 2102 |
| BceAI | ACGGC | 2 cut(s) | 1497, 1590 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 786, 820 |
| BciT130I | CCWGG | 2 cut(s) | 692, 1814 |
| BclI | TGATCA | 1 cut(s) | 78 |
| BcnI | CCSGG | 2 cut(s) | 1290, 1307 |
| BfmI | CTRYAG | 2 cut(s) | 549, 1868 |
| BfoI | RGCGCY | 1 cut(s) | 634 |
| BfrI | CTTAAG | 1 cut(s) | 89 |
| BfuAI | ACCTGC | 1 cut(s) | 1250 |
| BlpI | GCTNAGC | 3 cut(s) | 350, 445, 500 |
| Bme1390I | CCNGG | 4 cut(s) | 692, 1290, 1307, 1814 |
| Bme18I | GGWCC | 2 cut(s) | 1330, 1488 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 2119 |
| BmeT110I | CYCGRG | 2 cut(s) | 1402, 1409 |
| BmgBI | CACGTC | 1 cut(s) | 202 |
| BmgT120I | GGNCC | 3 cut(s) | 1330, 1488, 1891 |
| BmrFI | CCNGG | 4 cut(s) | 692, 1290, 1307, 1814 |
| BmrI | ACTGGG | 2 cut(s) | 1738, 2024 |
| BmsI | GCATC | 2 cut(s) | 151, 798 |
| BmtI | GCTAGC | 2 cut(s) | 339, 699 |
| BmuI | ACTGGG | 2 cut(s) | 1738, 2024 |
| BpiI | GAAGAC | 2 cut(s) | 363, 1461 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 396, 428 |
| BpmI | CTGGAG | 2 cut(s) | 1868, 1920 |
| Bpu1102I | GCTNAGC | 3 cut(s) | 350, 445, 500 |
| BpuEI | CTTGAG | 2 cut(s) | 217, 1376 |
| BpuMI | CCSGG | 2 cut(s) | 1290, 1307 |
| Bsa29I | ATCGAT | 1 cut(s) | 806 |
| BsaAI | YACGTR | 2 cut(s) | 192, 1129 |
| BsaHI | GRCGYC | 5 cut(s) | 631, 735, 777, 1721, 2115 |
| BsaI | GGTCTC | 1 cut(s) | 1703 |
| BsaJI | CCNNGG | 8 cut(s) | 57, 226, 602, 615, 819, 946, 1459, 1887 |
| BsaWI | WCCGGW | 1 cut(s) | 1701 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1548, 1578, 1706, 1736 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 16, 1289, 1528, 1545, 1819, 1893, 1973 |
| Bse118I | RCCGGY | 1 cut(s) | 1893 |
| Bse1I | ACTGG | 6 cut(s) | 299, 1208, 1737, 1744, 2030, 2044 |
| BseAI | TCCGGA | 1 cut(s) | 1701 |
| BseBI | CCWGG | 2 cut(s) | 692, 1814 |
| BseCI | ATCGAT | 1 cut(s) | 806 |
| BseDI | CCNNGG | 8 cut(s) | 57, 226, 602, 615, 819, 946, 1459, 1887 |
| BseGI | GGATG | 4 cut(s) | 736, 1822, 2027, 2105 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 16, 1289, 1528, 1545, 1819, 1893, 1973 |
| BseMII | CTCAG | 2 cut(s) | 1659, 2068 |
| BseNI | ACTGG | 6 cut(s) | 299, 1208, 1737, 1744, 2030, 2044 |
| BseRI | GAGGAG | 3 cut(s) | 1184, 1730, 1976 |
| BseSI | GKGCMC | 3 cut(s) | 930, 1282, 2047 |
| BseXI | GCAGC | 7 cut(s) | 694, 951, 1410, 1430, 1684, 1855, 1966 |
| BseYI | CCCAGC | 2 cut(s) | 935, 1245 |
| Bsh1236I | CGCG | 5 cut(s) | 402, 774, 821, 2068, 2093 |
| BshFI | GGCC | 9 cut(s) | 9, 1437, 1521, 1577, 1626, 1893, 1922, 1985, 2082 |
| BshNI | GGYRCC | 4 cut(s) | 183, 288, 630, 2042 |
| BshVI | ATCGAT | 1 cut(s) | 806 |
| BsiHKAI | GWGCWC | 2 cut(s) | 32, 930 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1402, 1409 |
| BsiSI | CCGG | 4 cut(s) | 1290, 1306, 1702, 1894 |
| BsiWI | CGTACG | 1 cut(s) | 188 |
| BslFI | GGGAC | 3 cut(s) | 1322, 1573, 2107 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 16, 1289, 1528, 1545, 1819, 1893, 1973 |
| BsmBI | CGTCTC | 3 cut(s) | 166, 1665, 1712 |
| BsmFI | GGGAC | 3 cut(s) | 1322, 1573, 2107 |
| BsnI | GGCC | 9 cut(s) | 9, 1437, 1521, 1577, 1626, 1893, 1922, 1985, 2082 |
| Bso31I | GGTCTC | 1 cut(s) | 1703 |
| BsoBI | CYCGRG | 2 cut(s) | 1402, 1409 |
| Bsp1286I | GDGCHC | 4 cut(s) | 32, 930, 1282, 2047 |
| Bsp13I | TCCGGA | 1 cut(s) | 1701 |
| Bsp143I | GATC | 7 cut(s) | 69, 78, 176, 211, 803, 1000, 2141 |
| Bsp1720I | GCTNAGC | 3 cut(s) | 350, 445, 500 |
| Bsp19I | CCATGG | 2 cut(s) | 57, 615 |
| Bsp68I | TCGCGA | 1 cut(s) | 774 |
| BspANI | GGCC | 9 cut(s) | 9, 1437, 1521, 1577, 1626, 1893, 1922, 1985, 2082 |
| BspCNI | CTCAG | 2 cut(s) | 1660, 2067 |
| BspDI | ATCGAT | 1 cut(s) | 806 |
| BspEI | TCCGGA | 1 cut(s) | 1701 |
| BspFNI | CGCG | 5 cut(s) | 402, 774, 821, 2068, 2093 |
| BspHI | TCATGA | 1 cut(s) | 135 |
| BspMAI | CTGCAG | 1 cut(s) | 553 |
| BspMI | ACCTGC | 1 cut(s) | 1250 |
| BspOI | GCTAGC | 2 cut(s) | 339, 699 |
| BspPI | GGATC | 1 cut(s) | 811 |
| BspT107I | GGYRCC | 4 cut(s) | 183, 288, 630, 2042 |
| BspTI | CTTAAG | 1 cut(s) | 89 |
| BspTNI | GGTCTC | 1 cut(s) | 1703 |
| BsrFI | RCCGGY | 1 cut(s) | 1893 |
| BsrI | ACTGG | 6 cut(s) | 299, 1208, 1737, 1744, 2030, 2044 |
| BssAI | RCCGGY | 1 cut(s) | 1893 |
| BssECI | CCNNGG | 8 cut(s) | 57, 226, 602, 615, 819, 946, 1459, 1887 |
| BssMI | GATC | 7 cut(s) | 69, 78, 176, 211, 803, 1000, 2141 |
| BssNAI | GTATAC | 2 cut(s) | 1126, 1950 |
| BssNI | GRCGYC | 5 cut(s) | 631, 735, 777, 1721, 2115 |
| BssSI | CACGAG | 3 cut(s) | 929, 1275, 1631 |
| BssT1I | CCWWGG | 5 cut(s) | 57, 615, 946, 1459, 1887 |
| Bst1107I | GTATAC | 2 cut(s) | 1126, 1950 |
| Bst2BI | CACGAG | 3 cut(s) | 929, 1275, 1631 |
| Bst2UI | CCWGG | 2 cut(s) | 692, 1814 |
| Bst6I | CTCTTC | 2 cut(s) | 738, 786 |
| BstACI | GRCGYC | 5 cut(s) | 631, 735, 777, 1721, 2115 |
| BstAFI | CTTAAG | 1 cut(s) | 89 |
| BstBAI | YACGTR | 2 cut(s) | 192, 1129 |
| BstC8I | GCNNGC | 6 cut(s) | 337, 370, 418, 697, 1474, 1895 |
| BstDEI | CTNAG | 6 cut(s) | 350, 445, 500, 1642, 1668, 2054 |
| BstDSI | CCRYGG | 4 cut(s) | 57, 602, 615, 819 |
| BstEII | GGTNACC | 1 cut(s) | 823 |
| BstF5I | GGATG | 4 cut(s) | 736, 1822, 2027, 2105 |
| BstFNI | CGCG | 5 cut(s) | 402, 774, 821, 2068, 2093 |
| BstH2I | RGCGCY | 1 cut(s) | 634 |
| BstHHI | GCGC | 8 cut(s) | 349, 402, 444, 633, 724, 1569, 1843, 2070 |
| BstKTI | GATC | 7 cut(s) | 72, 81, 179, 214, 806, 1003, 2144 |
| BstMBI | GATC | 7 cut(s) | 69, 78, 176, 211, 803, 1000, 2141 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 161, 571, 696, 1443, 1792, 1873, 1979 |
| BstNI | CCWGG | 2 cut(s) | 692, 1814 |
| BstNSI | RCATGY | 2 cut(s) | 1033, 1366 |
| BstPI | GGTNACC | 1 cut(s) | 823 |
| BstSCI | CCNGG | 4 cut(s) | 690, 1288, 1305, 1812 |
| BstSFI | CTRYAG | 2 cut(s) | 549, 1868 |
| BstSLI | GKGCMC | 3 cut(s) | 930, 1282, 2047 |
| BstUI | CGCG | 5 cut(s) | 402, 774, 821, 2068, 2093 |
| BstV1I | GCAGC | 7 cut(s) | 694, 951, 1410, 1430, 1684, 1855, 1966 |
| BstV2I | GAAGAC | 2 cut(s) | 363, 1461 |
| BstXI | CCANNNNNNTGG | 4 cut(s) | 1485, 1732, 1813, 2132 |
| BstZ17I | GTATAC | 2 cut(s) | 1126, 1950 |
| Bsu15I | ATCGAT | 1 cut(s) | 806 |
| BsuRI | GGCC | 9 cut(s) | 9, 1437, 1521, 1577, 1626, 1893, 1922, 1985, 2082 |
| BsuTUI | ATCGAT | 1 cut(s) | 806 |
| BtgI | CCRYGG | 4 cut(s) | 57, 602, 615, 819 |
| BtgZI | GCGATG | 1 cut(s) | 313 |
| BtrI | CACGTC | 1 cut(s) | 202 |
| BtsCI | GGATG | 4 cut(s) | 736, 1822, 2027, 2105 |
| BtsI | GCAGTG | 2 cut(s) | 560, 1181 |
| BtuMI | TCGCGA | 1 cut(s) | 774 |
| BveI | ACCTGC | 1 cut(s) | 1250 |
| Cac8I | GCNNGC | 6 cut(s) | 337, 370, 418, 697, 1474, 1895 |
| CaiI | CAGNNNCTG | 2 cut(s) | 455, 985 |
| CciI | TCATGA | 1 cut(s) | 135 |
| CfoI | GCGC | 8 cut(s) | 349, 402, 444, 633, 724, 1569, 1843, 2070 |
| Cfr10I | RCCGGY | 1 cut(s) | 1893 |
| Cfr13I | GGNCC | 3 cut(s) | 1330, 1488, 1891 |
| Cfr42I | CCGCGG | 1 cut(s) | 822 |
| ClaI | ATCGAT | 1 cut(s) | 806 |
| CseI | GACGC | 4 cut(s) | 524, 785, 1319, 2123 |
| Csp6I | GTAC | 4 cut(s) | 118, 189, 289, 1536 |
| CviAII | CATG | 9 cut(s) | 25, 58, 136, 616, 725, 1030, 1363, 1384, 1395 |
| CviQI | GTAC | 4 cut(s) | 118, 189, 289, 1536 |
| DdeI | CTNAG | 6 cut(s) | 350, 445, 500, 1642, 1668, 2054 |
| DinI | GGCGCC | 1 cut(s) | 632 |
| DpnI | GATC | 7 cut(s) | 71, 80, 178, 213, 805, 1002, 2143 |
| DpnII | GATC | 7 cut(s) | 69, 78, 176, 211, 803, 1000, 2141 |
| DraIII | CACNNNGTG | 1 cut(s) | 1746 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1654 |
| DriI | GACNNNNNGTC | 1 cut(s) | 2119 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1654 |
| EaeI | YGGCCR | 3 cut(s) | 1519, 1983, 2080 |
| Eam1104I | CTCTTC | 2 cut(s) | 738, 786 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 2119 |
| EarI | CTCTTC | 2 cut(s) | 738, 786 |
| EciI | GGCGGA | 5 cut(s) | 836, 932, 1112, 1751, 2034 |
| Eco130I | CCWWGG | 5 cut(s) | 57, 615, 946, 1459, 1887 |
| Eco147I | AGGCCT | 2 cut(s) | 9, 1922 |
| Eco31I | GGTCTC | 1 cut(s) | 1703 |
| Eco47I | GGWCC | 2 cut(s) | 1330, 1488 |
| Eco57I | CTGAAG | 4 cut(s) | 150, 962, 1713, 1895 |
| Eco88I | CYCGRG | 2 cut(s) | 1402, 1409 |
| Eco91I | GGTNACC | 1 cut(s) | 823 |
| EcoO65I | GGTNACC | 1 cut(s) | 823 |
| EcoRII | CCWGG | 2 cut(s) | 690, 1812 |
| EcoT14I | CCWWGG | 5 cut(s) | 57, 615, 946, 1459, 1887 |
| EgeI | GGCGCC | 1 cut(s) | 632 |
| EheI | GGCGCC | 1 cut(s) | 632 |
| ErhI | CCWWGG | 5 cut(s) | 57, 615, 946, 1459, 1887 |
| Esp3I | CGTCTC | 3 cut(s) | 166, 1665, 1712 |
| FaeI | CATG | 9 cut(s) | 28, 61, 139, 619, 728, 1033, 1366, 1387, 1398 |
| FaqI | GGGAC | 3 cut(s) | 1322, 1573, 2107 |
| FatI | CATG | 9 cut(s) | 24, 57, 135, 615, 724, 1029, 1362, 1383, 1394 |
| FauI | CCCGC | 2 cut(s) | 1419, 2073 |
| FbaI | TGATCA | 1 cut(s) | 78 |
| FblI | GTMKAC | 2 cut(s) | 1125, 1949 |
| FokI | GGATG | 4 cut(s) | 743, 1829, 2034, 2112 |
| FspI | TGCGCA | 1 cut(s) | 723 |
| GlaI | GCGC | 8 cut(s) | 348, 401, 443, 632, 723, 1568, 1842, 2069 |
| GsaI | CCCAGC | 2 cut(s) | 939, 1249 |
| GsuI | CTGGAG | 2 cut(s) | 1868, 1920 |
| HaeII | RGCGCY | 1 cut(s) | 634 |
| HaeIII | GGCC | 9 cut(s) | 9, 1437, 1521, 1577, 1626, 1893, 1922, 1985, 2082 |
| HapII | CCGG | 4 cut(s) | 1290, 1306, 1702, 1894 |
| HgaI | GACGC | 4 cut(s) | 524, 785, 1319, 2123 |
| HhaI | GCGC | 8 cut(s) | 349, 402, 444, 633, 724, 1569, 1843, 2070 |
| Hin1I | GRCGYC | 5 cut(s) | 631, 735, 777, 1721, 2115 |
| Hin1II | CATG | 9 cut(s) | 28, 61, 139, 619, 728, 1033, 1366, 1387, 1398 |
| Hin6I | GCGC | 8 cut(s) | 347, 400, 442, 631, 722, 1567, 1841, 2068 |
| HinP1I | GCGC | 8 cut(s) | 347, 400, 442, 631, 722, 1567, 1841, 2068 |
| HincII | GTYRAC | 3 cut(s) | 645, 1161, 2035 |
| HindII | GTYRAC | 3 cut(s) | 645, 1161, 2035 |
| HinfI | GANTC | 8 cut(s) | 132, 479, 506, 755, 982, 1405, 1906, 2120 |
| HpaI | GTTAAC | 1 cut(s) | 645 |
| HpaII | CCGG | 4 cut(s) | 1290, 1306, 1702, 1894 |
| Hpy166II | GTNNAC | 9 cut(s) | 645, 875, 928, 1126, 1155, 1161, 1488, 1950, 2035 |
| Hpy188III | TCNNGA | 8 cut(s) | 13, 136, 773, 1012, 1223, 1409, 1702, 1993 |
| Hpy8I | GTNNAC | 9 cut(s) | 645, 875, 928, 1126, 1155, 1161, 1488, 1950, 2035 |
| Hpy99I | CGWCG | 4 cut(s) | 740, 779, 1511, 1576 |
| HpyAV | CCTTC | 8 cut(s) | 88, 886, 986, 1018, 1238, 1615, 1688, 1699 |
| HpyCH4IV | ACGT | 9 cut(s) | 140, 191, 201, 530, 679, 735, 1128, 1157, 1721 |
| HpyCH4V | TGCA | 9 cut(s) | 199, 312, 420, 551, 928, 1080, 1345, 1398, 1786 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 161, 571, 696, 1443, 1792, 1873, 1979 |
| HpyF3I | CTNAG | 6 cut(s) | 350, 445, 500, 1642, 1668, 2054 |
| HpySE526I | ACGT | 9 cut(s) | 140, 191, 201, 530, 679, 735, 1128, 1157, 1721 |
| Hsp92I | GRCGYC | 5 cut(s) | 631, 735, 777, 1721, 2115 |
| Hsp92II | CATG | 9 cut(s) | 28, 61, 139, 619, 728, 1033, 1366, 1387, 1398 |
| HspAI | GCGC | 8 cut(s) | 347, 400, 442, 631, 722, 1567, 1841, 2068 |
| KasI | GGCGCC | 1 cut(s) | 630 |
| Kpn2I | TCCGGA | 1 cut(s) | 1701 |
| KpnI | GGTACC | 1 cut(s) | 292 |
| KroI | GCCGGC | 1 cut(s) | 1893 |
| KroNI | GCCGGC | 1 cut(s) | 1895 |
| Ksp22I | TGATCA | 1 cut(s) | 78 |
| KspAI | GTTAAC | 1 cut(s) | 645 |
| KspI | CCGCGG | 1 cut(s) | 822 |
| Kzo9I | GATC | 7 cut(s) | 69, 78, 176, 211, 803, 1000, 2141 |
| LmnI | GCTCC | 7 cut(s) | 1171, 1249, 1429, 1451, 1822, 1873, 1963 |
| Lsp1109I | GCAGC | 7 cut(s) | 694, 951, 1410, 1430, 1684, 1855, 1966 |
| LweI | GCATC | 2 cut(s) | 151, 798 |
| MaeII | ACGT | 9 cut(s) | 140, 191, 201, 530, 679, 735, 1128, 1157, 1721 |
| MalI | GATC | 7 cut(s) | 71, 80, 178, 213, 805, 1002, 2143 |
| MboI | GATC | 7 cut(s) | 69, 78, 176, 211, 803, 1000, 2141 |
| MfeI | CAATTG | 1 cut(s) | 786 |
| MhlI | GDGCHC | 4 cut(s) | 32, 930, 1282, 2047 |
| MlsI | TGGCCA | 1 cut(s) | 1521 |
| MluCI | AATT | 5 cut(s) | 389, 786, 1017, 1268, 1340 |
| MluNI | TGGCCA | 1 cut(s) | 1521 |
| Mly113I | GGCGCC | 1 cut(s) | 631 |
| MlyI | GAGTC | 3 cut(s) | 141, 1414, 2129 |
| MmeI | TCCRAC | 2 cut(s) | 1692, 1782 |
| Mox20I | TGGCCA | 1 cut(s) | 1521 |
| MroI | TCCGGA | 1 cut(s) | 1701 |
| MroNI | GCCGGC | 1 cut(s) | 1893 |
| MroXI | GAANNNNTTC | 2 cut(s) | 392, 588 |
| MscI | TGGCCA | 1 cut(s) | 1521 |
| MseI | TTAA | 4 cut(s) | 90, 644, 1271, 1944 |
| MslI | CAYNNNNRTG | 3 cut(s) | 729, 1113, 2109 |
| Msp20I | TGGCCA | 1 cut(s) | 1521 |
| MspA1I | CMGCKG | 4 cut(s) | 207, 821, 964, 1846 |
| MspCI | CTTAAG | 1 cut(s) | 89 |
| MspI | CCGG | 4 cut(s) | 1290, 1306, 1702, 1894 |
| MspR9I | CCNGG | 4 cut(s) | 692, 1290, 1307, 1814 |
| MunI | CAATTG | 1 cut(s) | 786 |
| MvaI | CCWGG | 2 cut(s) | 692, 1814 |
| MvnI | CGCG | 5 cut(s) | 402, 774, 821, 2068, 2093 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 161, 571, 696, 1443, 1792, 1873, 1979 |
| NaeI | GCCGGC | 1 cut(s) | 1895 |
| NarI | GGCGCC | 1 cut(s) | 631 |
| NciI | CCSGG | 2 cut(s) | 1290, 1307 |
| NcoI | CCATGG | 2 cut(s) | 57, 615 |
| NdeII | GATC | 7 cut(s) | 69, 78, 176, 211, 803, 1000, 2141 |
| NgoMIV | GCCGGC | 1 cut(s) | 1893 |
| NheI | GCTAGC | 2 cut(s) | 335, 695 |
| NlaIII | CATG | 9 cut(s) | 28, 61, 139, 619, 728, 1033, 1366, 1387, 1398 |
| NmeAIII | GCCGAG | 3 cut(s) | 251, 2096, 2143 |
| NmuCI | GTSAC | 6 cut(s) | 52, 266, 823, 1511, 1769, 2111 |
| NruI | TCGCGA | 1 cut(s) | 774 |
| NsbI | TGCGCA | 1 cut(s) | 723 |
| NspI | RCATGY | 2 cut(s) | 1033, 1366 |
| OliI | CACNNNNGTG | 1 cut(s) | 2109 |
| PaeR7I | CTCGAG | 1 cut(s) | 1409 |
| PagI | TCATGA | 1 cut(s) | 135 |
| PaqCI | CACCTGC | 1 cut(s) | 1250 |
| PceI | AGGCCT | 2 cut(s) | 9, 1922 |
| PciI | ACATGT | 1 cut(s) | 1029 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 536, 812, 1568 |
| PdiI | GCCGGC | 1 cut(s) | 1895 |
| PdmI | GAANNNNTTC | 2 cut(s) | 392, 588 |
| PfeI | GAWTC | 5 cut(s) | 479, 506, 755, 982, 1906 |
| Pfl23II | CGTACG | 1 cut(s) | 188 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1973 |
| PleI | GAGTC | 3 cut(s) | 140, 1413, 2128 |
| PluTI | GGCGCC | 1 cut(s) | 634 |
| PpsI | GAGTC | 3 cut(s) | 140, 1413, 2128 |
| Ppu21I | YACGTR | 2 cut(s) | 192, 1129 |
| PscI | ACATGT | 1 cut(s) | 1029 |
| Psp6I | CCWGG | 2 cut(s) | 690, 1812 |
| PspEI | GGTNACC | 1 cut(s) | 823 |
| PspFI | CCCAGC | 2 cut(s) | 935, 1245 |
| PspGI | CCWGG | 2 cut(s) | 690, 1812 |
| PspLI | CGTACG | 1 cut(s) | 188 |
| PspPI | GGNCC | 3 cut(s) | 1330, 1488, 1891 |
| PstI | CTGCAG | 1 cut(s) | 553 |
| PstNI | CAGNNNCTG | 2 cut(s) | 455, 985 |
| PvuII | CAGCTG | 1 cut(s) | 1846 |
| RruI | TCGCGA | 1 cut(s) | 774 |
| RsaI | GTAC | 4 cut(s) | 119, 190, 290, 1537 |
| RsaNI | GTAC | 4 cut(s) | 118, 189, 289, 1536 |
| RseI | CAYNNNNRTG | 3 cut(s) | 729, 1113, 2109 |
| SacII | CCGCGG | 1 cut(s) | 822 |
| SaqAI | TTAA | 4 cut(s) | 90, 644, 1271, 1944 |
| Sau3AI | GATC | 7 cut(s) | 69, 78, 176, 211, 803, 1000, 2141 |
| Sau96I | GGNCC | 3 cut(s) | 1330, 1488, 1891 |
| SbfI | CCTGCAGG | 1 cut(s) | 553 |
| SchI | GAGTC | 3 cut(s) | 141, 1414, 2129 |
| ScrFI | CCNGG | 4 cut(s) | 692, 1290, 1307, 1814 |
| SdaI | CCTGCAGG | 1 cut(s) | 553 |
| SduI | GDGCHC | 4 cut(s) | 32, 930, 1282, 2047 |
| SfaNI | GCATC | 2 cut(s) | 151, 798 |
| SfcI | CTRYAG | 2 cut(s) | 549, 1868 |
| SfoI | GGCGCC | 1 cut(s) | 632 |
| Sfr274I | CTCGAG | 1 cut(s) | 1409 |
| Sfr303I | CCGCGG | 1 cut(s) | 822 |
| SgrBI | CCGCGG | 1 cut(s) | 822 |
| SinI | GGWCC | 2 cut(s) | 1330, 1488 |
| SlaI | CTCGAG | 1 cut(s) | 1409 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 729, 1113, 2109 |
| SmlI | CTYRAG | 5 cut(s) | 11, 89, 232, 1355, 1409 |
| SmoI | CTYRAG | 5 cut(s) | 11, 89, 232, 1355, 1409 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 553 |
| Sse9I | AATT | 5 cut(s) | 389, 786, 1017, 1268, 1340 |
| SseBI | AGGCCT | 2 cut(s) | 9, 1922 |
| SspDI | GGCGCC | 1 cut(s) | 630 |
| StuI | AGGCCT | 2 cut(s) | 9, 1922 |
| StyD4I | CCNGG | 4 cut(s) | 690, 1288, 1305, 1812 |
| StyI | CCWWGG | 5 cut(s) | 57, 615, 946, 1459, 1887 |
| TaiI | ACGT | 9 cut(s) | 143, 194, 204, 533, 682, 738, 1131, 1160, 1724 |
| TaqI | TCGA | 7 cut(s) | 37, 582, 806, 1260, 1410, 1652, 2157 |
| TasI | AATT | 5 cut(s) | 389, 786, 1017, 1268, 1340 |
| TatI | WGTACW | 1 cut(s) | 117 |
| TauI | GCSGC | 4 cut(s) | 668, 1549, 1985, 2085 |
| TfiI | GAWTC | 5 cut(s) | 479, 506, 755, 982, 1906 |
| Tru1I | TTAA | 4 cut(s) | 90, 644, 1271, 1944 |
| Tru9I | TTAA | 4 cut(s) | 90, 644, 1271, 1944 |
| TseFI | GTSAC | 6 cut(s) | 52, 266, 823, 1511, 1769, 2111 |
| TseI | GCWGC | 7 cut(s) | 707, 964, 1398, 1443, 1672, 1843, 1979 |
| Tsp45I | GTSAC | 6 cut(s) | 52, 266, 823, 1511, 1769, 2111 |
| TspDTI | ATGAA | 4 cut(s) | 392, 440, 1097, 1400 |
| TspGWI | ACGGA | 4 cut(s) | 528, 591, 804, 1973 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1973 |
| Vha464I | CTTAAG | 1 cut(s) | 89 |
| VneI | GTGCAC | 1 cut(s) | 926 |
| VpaK11BI | GGWCC | 2 cut(s) | 1330, 1488 |
| XapI | RAATTY | 2 cut(s) | 389, 1017 |
| XceI | RCATGY | 2 cut(s) | 1033, 1366 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 299, 2012 |
| XhoI | CTCGAG | 1 cut(s) | 1409 |
| XmiI | GTMKAC | 2 cut(s) | 1125, 1949 |
| XmnI | GAANNNNTTC | 2 cut(s) | 392, 588 |
| ZraI | GACGTC | 2 cut(s) | 736, 1722 |