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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 534 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 52 |
| AccBSI | CCGCTC | 1 cut(s) | 598 |
| AccI | GTMKAC | 3 cut(s) | 39, 153, 588 |
| AccII | CGCG | 1 cut(s) | 573 |
| AclI | AACGTT | 1 cut(s) | 525 |
| AclWI | GGATC | 2 cut(s) | 666, 685 |
| AcoI | YGGCCR | 1 cut(s) | 165 |
| AcuI | CTGAAG | 2 cut(s) | 674, 680 |
| AcyI | GRCGYC | 2 cut(s) | 357, 535 |
| AfaI | GTAC | 2 cut(s) | 5, 821 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 52, 436, 456, 544, 655, 700, 781 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 428, 460 |
| AleI | CACNNNNGTG | 3 cut(s) | 323, 725, 791 |
| AluBI | AGCT | 6 cut(s) | 146, 463, 517, 580, 631, 764 |
| AluI | AGCT | 6 cut(s) | 146, 463, 517, 580, 631, 764 |
| Alw26I | GTCTC | 4 cut(s) | 65, 372, 383, 628 |
| AlwI | GGATC | 2 cut(s) | 666, 685 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 52, 266 |
| Ama87I | CYCGRG | 1 cut(s) | 485 |
| AoxI | GGCC | 9 cut(s) | 21, 112, 165, 224, 399, 426, 447, 481, 504 |
| ApaI | GGGCCC | 1 cut(s) | 403 |
| ApeKI | GCWGC | 6 cut(s) | 82, 85, 190, 668, 710, 857 |
| AspLEI | GCGC | 2 cut(s) | 208, 537 |
| AspS9I | GGNCC | 8 cut(s) | 22, 113, 181, 224, 399, 400, 427, 601 |
| AsuHPI | GGTGA | 5 cut(s) | 89, 237, 451, 532, 739 |
| AvaI | CYCGRG | 1 cut(s) | 485 |
| AvaII | GGWCC | 2 cut(s) | 181, 601 |
| BaeGI | GKGCMC | 1 cut(s) | 403 |
| BanI | GGYRCC | 1 cut(s) | 534 |
| BanII | GRGCYC | 1 cut(s) | 403 |
| BauI | CACGAG | 1 cut(s) | 321 |
| BbvI | GCAGC | 6 cut(s) | 69, 72, 202, 655, 697, 844 |
| BccI | CCATC | 5 cut(s) | 401, 556, 762, 829, 902 |
| BceAI | ACGGC | 1 cut(s) | 136 |
| BcoDI | GTCTC | 4 cut(s) | 65, 372, 383, 628 |
| BfaI | CTAG | 5 cut(s) | 12, 147, 632, 758, 901 |
| BfoI | RGCGCY | 2 cut(s) | 209, 538 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 120 |
| Bme18I | GGWCC | 2 cut(s) | 181, 601 |
| BmeT110I | CYCGRG | 1 cut(s) | 485 |
| BmgT120I | GGNCC | 8 cut(s) | 22, 113, 181, 224, 399, 400, 427, 601 |
| BmsI | GCATC | 6 cut(s) | 81, 115, 279, 556, 870, 880 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 608, 640 |
| BpmI | CTGGAG | 1 cut(s) | 758 |
| Bpu10I | CCTNAGC | 1 cut(s) | 672 |
| BsaHI | GRCGYC | 2 cut(s) | 357, 535 |
| BsaI | GGTCTC | 1 cut(s) | 383 |
| BsaJI | CCNNGG | 2 cut(s) | 129, 543 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 135, 165 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 52, 436, 456, 544, 655, 700, 781 |
| Bse118I | RCCGGY | 1 cut(s) | 531 |
| Bse1I | ACTGG | 3 cut(s) | 57, 260, 614 |
| BseDI | CCNNGG | 2 cut(s) | 129, 543 |
| BseGI | GGATG | 2 cut(s) | 571, 895 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 52, 436, 456, 544, 655, 700, 781 |
| BseMII | CTCAG | 4 cut(s) | 60, 242, 714, 756 |
| BseNI | ACTGG | 3 cut(s) | 57, 260, 614 |
| BseRI | GAGGAG | 2 cut(s) | 386, 784 |
| BseSI | GKGCMC | 1 cut(s) | 403 |
| BseX3I | CGGCCG | 1 cut(s) | 165 |
| BseXI | GCAGC | 6 cut(s) | 69, 72, 202, 655, 697, 844 |
| BseYI | CCCAGC | 2 cut(s) | 24, 429 |
| BsgI | GTGCAG | 1 cut(s) | 209 |
| Bsh1236I | CGCG | 1 cut(s) | 573 |
| Bsh1285I | CGRYCG | 1 cut(s) | 168 |
| BshFI | GGCC | 9 cut(s) | 23, 114, 167, 226, 401, 428, 449, 483, 506 |
| BshNI | GGYRCC | 1 cut(s) | 534 |
| BsiEI | CGRYCG | 1 cut(s) | 168 |
| BsiHKCI | CYCGRG | 1 cut(s) | 485 |
| BsiSI | CCGG | 1 cut(s) | 532 |
| BslFI | GGGAC | 2 cut(s) | 167, 614 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 52, 436, 456, 544, 655, 700, 781 |
| BsmAI | GTCTC | 4 cut(s) | 65, 372, 383, 628 |
| BsmFI | GGGAC | 2 cut(s) | 167, 614 |
| BsnI | GGCC | 9 cut(s) | 23, 114, 167, 226, 401, 428, 449, 483, 506 |
| Bso31I | GGTCTC | 1 cut(s) | 383 |
| BsoBI | CYCGRG | 1 cut(s) | 485 |
| Bsp120I | GGGCCC | 1 cut(s) | 399 |
| Bsp1286I | GDGCHC | 1 cut(s) | 403 |
| Bsp143I | GATC | 2 cut(s) | 658, 690 |
| BspANI | GGCC | 9 cut(s) | 23, 114, 167, 226, 401, 428, 449, 483, 506 |
| BspCNI | CTCAG | 4 cut(s) | 61, 241, 715, 757 |
| BspFNI | CGCG | 1 cut(s) | 573 |
| BspPI | GGATC | 2 cut(s) | 666, 685 |
| BspT107I | GGYRCC | 1 cut(s) | 534 |
| BspTNI | GGTCTC | 1 cut(s) | 383 |
| BsrBI | CCGCTC | 1 cut(s) | 598 |
| BsrFI | RCCGGY | 1 cut(s) | 531 |
| BsrI | ACTGG | 3 cut(s) | 57, 260, 614 |
| BssAI | RCCGGY | 1 cut(s) | 531 |
| BssECI | CCNNGG | 2 cut(s) | 129, 543 |
| BssMI | GATC | 2 cut(s) | 658, 690 |
| BssNI | GRCGYC | 2 cut(s) | 357, 535 |
| BssSI | CACGAG | 1 cut(s) | 321 |
| BssT1I | CCWWGG | 1 cut(s) | 543 |
| Bst2BI | CACGAG | 1 cut(s) | 321 |
| Bst4CI | ACNGT | 1 cut(s) | 268 |
| Bst6I | CTCTTC | 2 cut(s) | 363, 725 |
| BstACI | GRCGYC | 2 cut(s) | 357, 535 |
| BstC8I | GCNNGC | 5 cut(s) | 18, 125, 210, 571, 828 |
| BstDEI | CTNAG | 7 cut(s) | 69, 228, 672, 678, 714, 723, 765 |
| BstDSI | CCRYGG | 1 cut(s) | 129 |
| BstENI | CCTNNNNNAGG | 3 cut(s) | 454, 542, 653 |
| BstF5I | GGATG | 2 cut(s) | 571, 895 |
| BstFNI | CGCG | 1 cut(s) | 573 |
| BstH2I | RGCGCY | 2 cut(s) | 209, 538 |
| BstHHI | GCGC | 2 cut(s) | 208, 537 |
| BstKTI | GATC | 2 cut(s) | 661, 693 |
| BstMAI | GTCTC | 4 cut(s) | 65, 372, 383, 628 |
| BstMBI | GATC | 2 cut(s) | 658, 690 |
| BstMCI | CGRYCG | 1 cut(s) | 168 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 17, 91, 120, 289, 298, 674, 797, 857 |
| BstNSI | RCATGY | 3 cut(s) | 305, 623, 877 |
| BstSLI | GKGCMC | 1 cut(s) | 403 |
| BstUI | CGCG | 1 cut(s) | 573 |
| BstV1I | GCAGC | 6 cut(s) | 69, 72, 202, 655, 697, 844 |
| BstX2I | RGATCY | 1 cut(s) | 690 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 325 |
| BstYI | RGATCY | 1 cut(s) | 690 |
| BstZI | CGGCCG | 1 cut(s) | 165 |
| BsuRI | GGCC | 9 cut(s) | 23, 114, 167, 226, 401, 428, 449, 483, 506 |
| BtgI | CCRYGG | 1 cut(s) | 129 |
| BtsCI | GGATG | 2 cut(s) | 571, 895 |
| BtsI | GCAGTG | 1 cut(s) | 786 |
| BtsIMutI | CAGTG | 3 cut(s) | 50, 720, 786 |
| Cac8I | GCNNGC | 5 cut(s) | 18, 125, 210, 571, 828 |
| CaiI | CAGNNNCTG | 2 cut(s) | 52, 266 |
| CfoI | GCGC | 2 cut(s) | 208, 537 |
| Cfr10I | RCCGGY | 1 cut(s) | 531 |
| Cfr13I | GGNCC | 8 cut(s) | 22, 113, 181, 224, 399, 400, 427, 601 |
| CseI | GACGC | 1 cut(s) | 365 |
| Csp6I | GTAC | 2 cut(s) | 4, 820 |
| CviAII | CATG | 5 cut(s) | 302, 620, 778, 832, 874 |
| CviQI | GTAC | 2 cut(s) | 4, 820 |
| DdeI | CTNAG | 7 cut(s) | 69, 228, 672, 678, 714, 723, 765 |
| DinI | GGCGCC | 1 cut(s) | 536 |
| DpnI | GATC | 2 cut(s) | 660, 692 |
| DpnII | GATC | 2 cut(s) | 658, 690 |
| EaeI | YGGCCR | 1 cut(s) | 165 |
| EagI | CGGCCG | 1 cut(s) | 165 |
| Eam1104I | CTCTTC | 2 cut(s) | 363, 725 |
| EarI | CTCTTC | 2 cut(s) | 363, 725 |
| EciI | GGCGGA | 1 cut(s) | 563 |
| EclXI | CGGCCG | 1 cut(s) | 165 |
| Eco130I | CCWWGG | 1 cut(s) | 543 |
| Eco147I | AGGCCT | 1 cut(s) | 483 |
| Eco24I | GRGCYC | 1 cut(s) | 403 |
| Eco31I | GGTCTC | 1 cut(s) | 383 |
| Eco47I | GGWCC | 2 cut(s) | 181, 601 |
| Eco52I | CGGCCG | 1 cut(s) | 165 |
| Eco57I | CTGAAG | 2 cut(s) | 674, 680 |
| Eco88I | CYCGRG | 1 cut(s) | 485 |
| EcoNI | CCTNNNNNAGG | 3 cut(s) | 454, 542, 653 |
| EcoO109I | RGGNCCY | 3 cut(s) | 181, 399, 601 |
| EcoT14I | CCWWGG | 1 cut(s) | 543 |
| EcoT38I | GRGCYC | 1 cut(s) | 403 |
| EgeI | GGCGCC | 1 cut(s) | 536 |
| EheI | GGCGCC | 1 cut(s) | 536 |
| ErhI | CCWWGG | 1 cut(s) | 543 |
| FaeI | CATG | 5 cut(s) | 305, 623, 781, 835, 877 |
| FaiI | YATR | 7 cut(s) | 303, 351, 621, 644, 779, 833, 875 |
| FaqI | GGGAC | 2 cut(s) | 167, 614 |
| FatI | CATG | 5 cut(s) | 301, 619, 777, 831, 873 |
| FauI | CCCGC | 4 cut(s) | 265, 578, 591, 693 |
| FblI | GTMKAC | 3 cut(s) | 39, 153, 588 |
| FokI | GGATG | 1 cut(s) | 578 |
| FriOI | GRGCYC | 1 cut(s) | 403 |
| FspBI | CTAG | 5 cut(s) | 12, 147, 632, 758, 901 |
| GlaI | GCGC | 2 cut(s) | 207, 536 |
| GsaI | CCCAGC | 2 cut(s) | 28, 433 |
| GsuI | CTGGAG | 1 cut(s) | 758 |
| HaeII | RGCGCY | 2 cut(s) | 209, 538 |
| HaeIII | GGCC | 9 cut(s) | 23, 114, 167, 226, 401, 428, 449, 483, 506 |
| HapII | CCGG | 1 cut(s) | 532 |
| HgaI | GACGC | 1 cut(s) | 365 |
| HhaI | GCGC | 2 cut(s) | 208, 537 |
| Hin1I | GRCGYC | 2 cut(s) | 357, 535 |
| Hin1II | CATG | 5 cut(s) | 305, 623, 781, 835, 877 |
| Hin6I | GCGC | 2 cut(s) | 206, 535 |
| HinP1I | GCGC | 2 cut(s) | 206, 535 |
| HincII | GTYRAC | 4 cut(s) | 40, 154, 529, 589 |
| HindII | GTYRAC | 4 cut(s) | 40, 154, 529, 589 |
| HinfI | GANTC | 2 cut(s) | 73, 704 |
| HpaII | CCGG | 1 cut(s) | 532 |
| HphI | GGTGA | 5 cut(s) | 89, 237, 451, 532, 739 |
| Hpy166II | GTNNAC | 6 cut(s) | 40, 154, 523, 529, 589, 720 |
| Hpy188I | TCNGA | 2 cut(s) | 70, 231 |
| Hpy188III | TCNNGA | 3 cut(s) | 137, 487, 758 |
| Hpy8I | GTNNAC | 6 cut(s) | 40, 154, 523, 529, 589, 720 |
| Hpy99I | CGWCG | 2 cut(s) | 41, 593 |
| HpyAV | CCTTC | 8 cut(s) | 226, 247, 430, 649, 704, 775, 841, 880 |
| HpyCH4III | ACNGT | 1 cut(s) | 268 |
| HpyCH4IV | ACGT | 2 cut(s) | 525, 591 |
| HpyCH4V | TGCA | 4 cut(s) | 190, 292, 499, 883 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 17, 91, 120, 289, 298, 674, 797, 857 |
| HpyF3I | CTNAG | 7 cut(s) | 69, 228, 672, 678, 714, 723, 765 |
| HpySE526I | ACGT | 2 cut(s) | 525, 591 |
| Hsp92I | GRCGYC | 2 cut(s) | 357, 535 |
| Hsp92II | CATG | 5 cut(s) | 305, 623, 781, 835, 877 |
| HspAI | GCGC | 2 cut(s) | 206, 535 |
| KasI | GGCGCC | 1 cut(s) | 534 |
| Kzo9I | GATC | 2 cut(s) | 658, 690 |
| LmnI | GCTCC | 5 cut(s) | 143, 174, 280, 460, 771 |
| Lsp1109I | GCAGC | 6 cut(s) | 69, 72, 202, 655, 697, 844 |
| LweI | GCATC | 6 cut(s) | 81, 115, 279, 556, 870, 880 |
| MaeI | CTAG | 5 cut(s) | 12, 147, 632, 758, 901 |
| MaeII | ACGT | 2 cut(s) | 525, 591 |
| MaeIII | GTNAC | 4 cut(s) | 262, 330, 439, 784 |
| MalI | GATC | 2 cut(s) | 660, 692 |
| MbiI | CCGCTC | 1 cut(s) | 598 |
| MboI | GATC | 2 cut(s) | 658, 690 |
| MboII | GAAGA | 2 cut(s) | 380, 742 |
| MfeI | CAATTG | 1 cut(s) | 293 |
| MflI | RGATCY | 1 cut(s) | 690 |
| MhlI | GDGCHC | 1 cut(s) | 403 |
| MluCI | AATT | 2 cut(s) | 293, 865 |
| Mly113I | GGCGCC | 1 cut(s) | 535 |
| MlyI | GAGTC | 1 cut(s) | 67 |
| MmeI | TCCRAC | 1 cut(s) | 258 |
| MseI | TTAA | 1 cut(s) | 804 |
| MslI | CAYNNNNRTG | 4 cut(s) | 323, 725, 791, 878 |
| MspA1I | CMGCKG | 2 cut(s) | 311, 700 |
| MspI | CCGG | 1 cut(s) | 532 |
| MunI | CAATTG | 1 cut(s) | 293 |
| MvnI | CGCG | 1 cut(s) | 573 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 17, 91, 120, 289, 298, 674, 797, 857 |
| NarI | GGCGCC | 1 cut(s) | 535 |
| NdeII | GATC | 2 cut(s) | 658, 690 |
| NlaIII | CATG | 5 cut(s) | 305, 623, 781, 835, 877 |
| NmuCI | GTSAC | 2 cut(s) | 439, 784 |
| NspI | RCATGY | 3 cut(s) | 305, 623, 877 |
| OliI | CACNNNNGTG | 3 cut(s) | 323, 725, 791 |
| PaeR7I | CTCGAG | 1 cut(s) | 485 |
| PceI | AGGCCT | 1 cut(s) | 483 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 126, 165, 612 |
| PfeI | GAWTC | 1 cut(s) | 704 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 52 |
| PleI | GAGTC | 1 cut(s) | 67 |
| PluTI | GGCGCC | 1 cut(s) | 538 |
| PpsI | GAGTC | 1 cut(s) | 67 |
| PpuMI | RGGWCCY | 2 cut(s) | 181, 601 |
| Psp1406I | AACGTT | 1 cut(s) | 525 |
| Psp5II | RGGWCCY | 2 cut(s) | 181, 601 |
| PspFI | CCCAGC | 2 cut(s) | 24, 429 |
| PspOMI | GGGCCC | 1 cut(s) | 399 |
| PspPI | GGNCC | 8 cut(s) | 22, 113, 181, 224, 399, 400, 427, 601 |
| PspPPI | RGGWCCY | 2 cut(s) | 181, 601 |
| PstNI | CAGNNNCTG | 2 cut(s) | 52, 266 |
| PsuI | RGATCY | 1 cut(s) | 690 |
| RsaI | GTAC | 2 cut(s) | 5, 821 |
| RsaNI | GTAC | 2 cut(s) | 4, 820 |
| RseI | CAYNNNNRTG | 4 cut(s) | 323, 725, 791, 878 |
| SalI | GTCGAC | 3 cut(s) | 38, 152, 587 |
| SaqAI | TTAA | 1 cut(s) | 804 |
| Sau3AI | GATC | 2 cut(s) | 658, 690 |
| Sau96I | GGNCC | 8 cut(s) | 22, 113, 181, 224, 399, 400, 427, 601 |
| SchI | GAGTC | 1 cut(s) | 67 |
| SduI | GDGCHC | 1 cut(s) | 403 |
| SfaNI | GCATC | 6 cut(s) | 81, 115, 279, 556, 870, 880 |
| SfoI | GGCGCC | 1 cut(s) | 536 |
| Sfr274I | CTCGAG | 1 cut(s) | 485 |
| SinI | GGWCC | 2 cut(s) | 181, 601 |
| SlaI | CTCGAG | 1 cut(s) | 485 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 323, 725, 791, 878 |
| SmlI | CTYRAG | 1 cut(s) | 485 |
| SmoI | CTYRAG | 1 cut(s) | 485 |
| Sse9I | AATT | 2 cut(s) | 293, 865 |
| SseBI | AGGCCT | 1 cut(s) | 483 |
| SspDI | GGCGCC | 1 cut(s) | 534 |
| SspMI | CTAG | 5 cut(s) | 12, 147, 632, 758, 901 |
| StuI | AGGCCT | 1 cut(s) | 483 |
| StyI | CCWWGG | 1 cut(s) | 543 |
| TaaI | ACNGT | 1 cut(s) | 268 |
| TaiI | ACGT | 2 cut(s) | 528, 594 |
| TaqI | TCGA | 7 cut(s) | 39, 153, 251, 486, 588, 606, 897 |
| TasI | AATT | 2 cut(s) | 293, 865 |
| TatI | WGTACW | 1 cut(s) | 819 |
| TauI | GCSGC | 8 cut(s) | 11, 23, 167, 286, 311, 346, 777, 863 |
| TfiI | GAWTC | 1 cut(s) | 704 |
| Tru1I | TTAA | 1 cut(s) | 804 |
| Tru9I | TTAA | 1 cut(s) | 804 |
| TscAI | CASTG | 3 cut(s) | 57, 727, 793 |
| TseFI | GTSAC | 2 cut(s) | 439, 784 |
| TseI | GCWGC | 6 cut(s) | 82, 85, 190, 668, 710, 857 |
| Tsp45I | GTSAC | 2 cut(s) | 439, 784 |
| TspDTI | ATGAA | 1 cut(s) | 794 |
| TspRI | CASTG | 3 cut(s) | 57, 727, 793 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 52 |
| VpaK11BI | GGWCC | 2 cut(s) | 181, 601 |
| XagI | CCTNNNNNAGG | 3 cut(s) | 454, 542, 653 |
| XbaI | TCTAGA | 1 cut(s) | 757 |
| XceI | RCATGY | 3 cut(s) | 305, 623, 877 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 107, 514, 838 |
| XhoI | CTCGAG | 1 cut(s) | 485 |
| XmiI | GTMKAC | 3 cut(s) | 39, 153, 588 |
| XspI | CTAG | 5 cut(s) | 12, 147, 632, 758, 901 |