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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AbsI | CCTCGAGG | 1 cut(s) | 569 |
| Acc65I | GGTACC | 1 cut(s) | 326 |
| AccB1I | GGYRCC | 3 cut(s) | 150, 256, 326 |
| AccBSI | CCGCTC | 1 cut(s) | 616 |
| AccII | CGCG | 1 cut(s) | 657 |
| AciI | CCGC | 9 cut(s) | 45, 208, 284, 321, 460, 605, 616, 632, 657 |
| AcoI | YGGCCR | 1 cut(s) | 478 |
| AcuI | CTGAAG | 2 cut(s) | 329, 569 |
| AcyI | GRCGYC | 1 cut(s) | 151 |
| AfaI | GTAC | 3 cut(s) | 41, 200, 328 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 424, 469, 532, 574, 628 |
| AgsI | TTSAA | 2 cut(s) | 19, 174 |
| AhlI | ACTAGT | 1 cut(s) | 434 |
| AleI | CACNNNNGTG | 1 cut(s) | 335 |
| AluBI | AGCT | 7 cut(s) | 183, 468, 505, 541, 547, 601, 687 |
| AluI | AGCT | 7 cut(s) | 183, 468, 505, 541, 547, 601, 687 |
| Alw26I | GTCTC | 2 cut(s) | 395, 684 |
| Ama87I | CYCGRG | 3 cut(s) | 333, 531, 569 |
| AoxI | GGCC | 6 cut(s) | 217, 411, 428, 455, 478, 588 |
| ApeKI | GCWGC | 4 cut(s) | 236, 496, 541, 544 |
| Asp718I | GGTACC | 1 cut(s) | 326 |
| AspLEI | GCGC | 2 cut(s) | 153, 230 |
| AspS9I | GGNCC | 5 cut(s) | 4, 218, 411, 428, 456 |
| AsuHPI | GGTGA | 2 cut(s) | 126, 154 |
| AvaI | CYCGRG | 3 cut(s) | 333, 531, 569 |
| AvaII | GGWCC | 1 cut(s) | 4 |
| BaeGI | GKGCMC | 1 cut(s) | 261 |
| BalI | TGGCCA | 1 cut(s) | 480 |
| BanI | GGYRCC | 3 cut(s) | 150, 256, 326 |
| BbvI | GCAGC | 4 cut(s) | 248, 483, 528, 556 |
| BccI | CCATC | 3 cut(s) | 413, 489, 640 |
| BceAI | ACGGC | 1 cut(s) | 385 |
| BcoDI | GTCTC | 2 cut(s) | 395, 684 |
| BcuI | ACTAGT | 1 cut(s) | 434 |
| BfaI | CTAG | 2 cut(s) | 435, 688 |
| BfmI | CTRYAG | 2 cut(s) | 155, 542 |
| BfoI | RGCGCY | 1 cut(s) | 154 |
| BisI | GCNGC | 8 cut(s) | 45, 237, 321, 497, 542, 545, 617, 658 |
| BlpI | GCTNAGC | 1 cut(s) | 60 |
| BlsI | GCNGC | 8 cut(s) | 46, 238, 322, 498, 543, 546, 618, 659 |
| Bme18I | GGWCC | 1 cut(s) | 4 |
| BmeT110I | CYCGRG | 3 cut(s) | 333, 531, 569 |
| BmgT120I | GGNCC | 5 cut(s) | 4, 218, 411, 428, 456 |
| BmiI | GGNNCC | 9 cut(s) | 152, 258, 270, 294, 328, 412, 429, 458, 620 |
| BmsI | GCATC | 3 cut(s) | 118, 291, 640 |
| BoxI | GACNNNNGTC | 1 cut(s) | 71 |
| BplI | GAGNNNNNCTC | 1 cut(s) | 664 |
| BpmI | CTGGAG | 1 cut(s) | 311 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 60 |
| BsaHI | GRCGYC | 1 cut(s) | 151 |
| BsaI | GGTCTC | 1 cut(s) | 395 |
| BsaJI | CCNNGG | 4 cut(s) | 194, 264, 530, 627 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 23, 53, 237, 267 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 424, 469, 532, 574, 628 |
| Bse1I | ACTGG | 1 cut(s) | 100 |
| BseDI | CCNNGG | 4 cut(s) | 194, 264, 530, 627 |
| BseGI | GGATG | 1 cut(s) | 655 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 424, 469, 532, 574, 628 |
| BseMII | CTCAG | 1 cut(s) | 74 |
| BseNI | ACTGG | 1 cut(s) | 100 |
| BseRI | GAGGAG | 1 cut(s) | 398 |
| BseSI | GKGCMC | 1 cut(s) | 261 |
| BseXI | GCAGC | 4 cut(s) | 248, 483, 528, 556 |
| BseYI | CCCAGC | 2 cut(s) | 47, 683 |
| BsgI | GTGCAG | 3 cut(s) | 30, 208, 255 |
| Bsh1236I | CGCG | 1 cut(s) | 657 |
| Bsh1285I | CGRYCG | 2 cut(s) | 75, 79 |
| BshFI | GGCC | 6 cut(s) | 219, 413, 430, 457, 480, 590 |
| BshNI | GGYRCC | 3 cut(s) | 150, 256, 326 |
| BsiEI | CGRYCG | 2 cut(s) | 75, 79 |
| BsiHKCI | CYCGRG | 3 cut(s) | 333, 531, 569 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 424, 469, 532, 574, 628 |
| BsmAI | GTCTC | 2 cut(s) | 395, 684 |
| BsnI | GGCC | 6 cut(s) | 219, 413, 430, 457, 480, 590 |
| Bso31I | GGTCTC | 1 cut(s) | 395 |
| BsoBI | CYCGRG | 3 cut(s) | 333, 531, 569 |
| Bsp1286I | GDGCHC | 1 cut(s) | 261 |
| Bsp143I | GATC | 1 cut(s) | 76 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 60 |
| BspACI | CCGC | 9 cut(s) | 45, 208, 284, 321, 460, 605, 616, 632, 657 |
| BspANI | GGCC | 6 cut(s) | 219, 413, 430, 457, 480, 590 |
| BspCNI | CTCAG | 1 cut(s) | 73 |
| BspFNI | CGCG | 1 cut(s) | 657 |
| BspLI | GGNNCC | 9 cut(s) | 152, 258, 270, 294, 328, 412, 429, 458, 620 |
| BspMAI | CTGCAG | 1 cut(s) | 546 |
| BspT107I | GGYRCC | 3 cut(s) | 150, 256, 326 |
| BspTNI | GGTCTC | 1 cut(s) | 395 |
| BsrBI | CCGCTC | 1 cut(s) | 616 |
| BsrI | ACTGG | 1 cut(s) | 100 |
| BssECI | CCNNGG | 4 cut(s) | 194, 264, 530, 627 |
| BssMI | GATC | 1 cut(s) | 76 |
| BssNI | GRCGYC | 1 cut(s) | 151 |
| BssT1I | CCWWGG | 3 cut(s) | 194, 264, 627 |
| Bst4CI | ACNGT | 4 cut(s) | 8, 73, 159, 203 |
| Bst6I | CTCTTC | 3 cut(s) | 375, 387, 436 |
| BstACI | GRCGYC | 1 cut(s) | 151 |
| BstC8I | GCNNGC | 5 cut(s) | 415, 419, 455, 603, 655 |
| BstDEI | CTNAG | 1 cut(s) | 60 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 626 |
| BstF5I | GGATG | 1 cut(s) | 655 |
| BstFNI | CGCG | 1 cut(s) | 657 |
| BstH2I | RGCGCY | 1 cut(s) | 154 |
| BstHHI | GCGC | 2 cut(s) | 153, 230 |
| BstKTI | GATC | 1 cut(s) | 79 |
| BstMAI | GTCTC | 2 cut(s) | 395, 684 |
| BstMBI | GATC | 1 cut(s) | 76 |
| BstMCI | CGRYCG | 2 cut(s) | 75, 79 |
| BstNSI | RCATGY | 2 cut(s) | 317, 679 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 71 |
| BstSFI | CTRYAG | 2 cut(s) | 155, 542 |
| BstSLI | GKGCMC | 1 cut(s) | 261 |
| BstUI | CGCG | 1 cut(s) | 657 |
| BstV1I | GCAGC | 4 cut(s) | 248, 483, 528, 556 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 337 |
| BsuRI | GGCC | 6 cut(s) | 219, 413, 430, 457, 480, 590 |
| BtgZI | GCGATG | 1 cut(s) | 387 |
| BtsCI | GGATG | 1 cut(s) | 655 |
| Cac8I | GCNNGC | 5 cut(s) | 415, 419, 455, 603, 655 |
| CfoI | GCGC | 2 cut(s) | 153, 230 |
| Cfr13I | GGNCC | 5 cut(s) | 4, 218, 411, 428, 456 |
| Csp6I | GTAC | 3 cut(s) | 40, 199, 327 |
| CviAII | CATG | 3 cut(s) | 314, 500, 676 |
| CviQI | GTAC | 3 cut(s) | 40, 199, 327 |
| DdeI | CTNAG | 1 cut(s) | 60 |
| DinI | GGCGCC | 1 cut(s) | 152 |
| DpnI | GATC | 1 cut(s) | 78 |
| DpnII | GATC | 1 cut(s) | 76 |
| EaeI | YGGCCR | 1 cut(s) | 478 |
| Eam1104I | CTCTTC | 3 cut(s) | 375, 387, 436 |
| EarI | CTCTTC | 3 cut(s) | 375, 387, 436 |
| EciI | GGCGGA | 2 cut(s) | 620, 647 |
| Eco130I | CCWWGG | 3 cut(s) | 194, 264, 627 |
| Eco31I | GGTCTC | 1 cut(s) | 395 |
| Eco47I | GGWCC | 1 cut(s) | 4 |
| Eco57I | CTGAAG | 2 cut(s) | 329, 569 |
| Eco88I | CYCGRG | 3 cut(s) | 333, 531, 569 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 626 |
| EcoO109I | RGGNCCY | 2 cut(s) | 218, 456 |
| EcoT14I | CCWWGG | 3 cut(s) | 194, 264, 627 |
| EgeI | GGCGCC | 1 cut(s) | 152 |
| EheI | GGCGCC | 1 cut(s) | 152 |
| ErhI | CCWWGG | 3 cut(s) | 194, 264, 627 |
| FaeI | CATG | 3 cut(s) | 317, 503, 679 |
| FaiI | YATR | 5 cut(s) | 38, 315, 423, 501, 677 |
| FatI | CATG | 3 cut(s) | 313, 499, 675 |
| FauI | CCCGC | 3 cut(s) | 201, 277, 467 |
| Fnu4HI | GCNGC | 8 cut(s) | 45, 237, 321, 497, 542, 545, 617, 658 |
| FokI | GGATG | 1 cut(s) | 662 |
| Fsp4HI | GCNGC | 8 cut(s) | 45, 237, 321, 497, 542, 545, 617, 658 |
| FspBI | CTAG | 2 cut(s) | 435, 688 |
| GlaI | GCGC | 2 cut(s) | 152, 229 |
| GluI | GCNGC | 8 cut(s) | 45, 237, 321, 497, 542, 545, 617, 658 |
| GsaI | CCCAGC | 2 cut(s) | 51, 687 |
| GsuI | CTGGAG | 1 cut(s) | 311 |
| HaeII | RGCGCY | 1 cut(s) | 154 |
| HaeIII | GGCC | 6 cut(s) | 219, 413, 430, 457, 480, 590 |
| HhaI | GCGC | 2 cut(s) | 153, 230 |
| Hin1I | GRCGYC | 1 cut(s) | 151 |
| Hin1II | CATG | 3 cut(s) | 317, 503, 679 |
| Hin6I | GCGC | 2 cut(s) | 151, 228 |
| HinP1I | GCGC | 2 cut(s) | 151, 228 |
| HphI | GGTGA | 2 cut(s) | 126, 154 |
| Hpy166II | GTNNAC | 1 cut(s) | 162 |
| Hpy188I | TCNGA | 2 cut(s) | 106, 348 |
| Hpy188III | TCNNGA | 1 cut(s) | 622 |
| Hpy8I | GTNNAC | 1 cut(s) | 162 |
| Hpy99I | CGWCG | 1 cut(s) | 73 |
| HpyAV | CCTTC | 1 cut(s) | 544 |
| HpyCH4III | ACNGT | 4 cut(s) | 8, 73, 159, 203 |
| HpyCH4IV | ACGT | 1 cut(s) | 609 |
| HpyCH4V | TGCA | 7 cut(s) | 11, 189, 236, 304, 499, 544, 583 |
| HpyF3I | CTNAG | 1 cut(s) | 60 |
| HpySE526I | ACGT | 1 cut(s) | 609 |
| Hsp92I | GRCGYC | 1 cut(s) | 151 |
| Hsp92II | CATG | 3 cut(s) | 317, 503, 679 |
| HspAI | GCGC | 2 cut(s) | 151, 228 |
| KasI | GGCGCC | 1 cut(s) | 150 |
| KpnI | GGTACC | 1 cut(s) | 330 |
| Kzo9I | GATC | 1 cut(s) | 76 |
| LmnI | GCTCC | 3 cut(s) | 211, 292, 624 |
| Lsp1109I | GCAGC | 4 cut(s) | 248, 483, 528, 556 |
| LweI | GCATC | 3 cut(s) | 118, 291, 640 |
| MaeI | CTAG | 2 cut(s) | 435, 688 |
| MaeII | ACGT | 1 cut(s) | 609 |
| MalI | GATC | 1 cut(s) | 78 |
| MbiI | CCGCTC | 1 cut(s) | 616 |
| MboI | GATC | 1 cut(s) | 76 |
| MboII | GAAGA | 6 cut(s) | 335, 361, 389, 392, 404, 453 |
| MfeI | CAATTG | 1 cut(s) | 305 |
| MhlI | GDGCHC | 1 cut(s) | 261 |
| MlsI | TGGCCA | 1 cut(s) | 480 |
| MluCI | AATT | 2 cut(s) | 114, 305 |
| MluNI | TGGCCA | 1 cut(s) | 480 |
| Mly113I | GGCGCC | 1 cut(s) | 151 |
| Mox20I | TGGCCA | 1 cut(s) | 480 |
| MscI | TGGCCA | 1 cut(s) | 480 |
| MslI | CAYNNNNRTG | 1 cut(s) | 335 |
| Msp20I | TGGCCA | 1 cut(s) | 480 |
| MspA1I | CMGCKG | 3 cut(s) | 47, 323, 547 |
| MunI | CAATTG | 1 cut(s) | 305 |
| MvnI | CGCG | 1 cut(s) | 657 |
| NarI | GGCGCC | 1 cut(s) | 151 |
| NdeII | GATC | 1 cut(s) | 76 |
| NlaIII | CATG | 3 cut(s) | 317, 503, 679 |
| NlaIV | GGNNCC | 9 cut(s) | 152, 258, 270, 294, 328, 412, 429, 458, 620 |
| NmeAIII | GCCGAG | 2 cut(s) | 127, 449 |
| NspI | RCATGY | 2 cut(s) | 317, 679 |
| OliI | CACNNNNGTG | 1 cut(s) | 335 |
| PaeR7I | CTCGAG | 1 cut(s) | 569 |
| PkrI | GCNGC | 8 cut(s) | 46, 238, 322, 498, 543, 546, 618, 659 |
| Ple19I | CGATCG | 1 cut(s) | 79 |
| PluTI | GGCGCC | 1 cut(s) | 154 |
| PshAI | GACNNNNGTC | 1 cut(s) | 71 |
| PspFI | CCCAGC | 2 cut(s) | 47, 683 |
| PspN4I | GGNNCC | 9 cut(s) | 152, 258, 270, 294, 328, 412, 429, 458, 620 |
| PspPI | GGNCC | 5 cut(s) | 4, 218, 411, 428, 456 |
| PspXI | VCTCGAGB | 1 cut(s) | 569 |
| PstI | CTGCAG | 1 cut(s) | 546 |
| PvuI | CGATCG | 1 cut(s) | 79 |
| PvuII | CAGCTG | 1 cut(s) | 547 |
| RsaI | GTAC | 3 cut(s) | 41, 200, 328 |
| RsaNI | GTAC | 3 cut(s) | 40, 199, 327 |
| RseI | CAYNNNNRTG | 1 cut(s) | 335 |
| SatI | GCNGC | 8 cut(s) | 45, 237, 321, 497, 542, 545, 617, 658 |
| Sau3AI | GATC | 1 cut(s) | 76 |
| Sau96I | GGNCC | 5 cut(s) | 4, 218, 411, 428, 456 |
| SduI | GDGCHC | 1 cut(s) | 261 |
| SfaNI | GCATC | 3 cut(s) | 118, 291, 640 |
| SfcI | CTRYAG | 2 cut(s) | 155, 542 |
| SfoI | GGCGCC | 1 cut(s) | 152 |
| Sfr274I | CTCGAG | 1 cut(s) | 569 |
| SinI | GGWCC | 1 cut(s) | 4 |
| SlaI | CTCGAG | 1 cut(s) | 569 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 335 |
| SmlI | CTYRAG | 1 cut(s) | 569 |
| SmoI | CTYRAG | 1 cut(s) | 569 |
| SpeI | ACTAGT | 1 cut(s) | 434 |
| Sse9I | AATT | 2 cut(s) | 114, 305 |
| SsiI | CCGC | 9 cut(s) | 45, 208, 284, 321, 460, 605, 616, 632, 657 |
| SspDI | GGCGCC | 1 cut(s) | 150 |
| SspMI | CTAG | 2 cut(s) | 435, 688 |
| StyI | CCWWGG | 3 cut(s) | 194, 264, 627 |
| TaaI | ACNGT | 4 cut(s) | 8, 73, 159, 203 |
| TaiI | ACGT | 1 cut(s) | 612 |
| TaqI | TCGA | 3 cut(s) | 75, 126, 570 |
| TasI | AATT | 2 cut(s) | 114, 305 |
| TauI | GCSGC | 4 cut(s) | 47, 323, 619, 660 |
| TseI | GCWGC | 4 cut(s) | 236, 496, 541, 544 |
| TspDTI | ATGAA | 1 cut(s) | 390 |
| VpaK11BI | GGWCC | 1 cut(s) | 4 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 626 |
| XceI | RCATGY | 2 cut(s) | 317, 679 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 598 |
| XhoI | CTCGAG | 1 cut(s) | 569 |
| XspI | CTAG | 2 cut(s) | 435, 688 |