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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 297 |
| AccB1I | GGYRCC | 1 cut(s) | 208 |
| AccBSI | CCGCTC | 1 cut(s) | 111 |
| AccII | CGCG | 1 cut(s) | 329 |
| AciI | CCGC | 6 cut(s) | 101, 111, 123, 185, 338, 360 |
| AcoI | YGGCCR | 1 cut(s) | 260 |
| AfaI | GTAC | 1 cut(s) | 256 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 97, 164, 198, 223 |
| AgsI | TTSAA | 1 cut(s) | 142 |
| AjnI | CCWGG | 1 cut(s) | 230 |
| AluBI | AGCT | 2 cut(s) | 94, 149 |
| AluI | AGCT | 2 cut(s) | 94, 149 |
| Alw26I | GTCTC | 1 cut(s) | 232 |
| AoxI | GGCC | 3 cut(s) | 120, 234, 260 |
| ApeKI | GCWGC | 3 cut(s) | 5, 86, 331 |
| AspLEI | GCGC | 4 cut(s) | 155, 298, 329, 331 |
| AspS9I | GGNCC | 2 cut(s) | 234, 270 |
| AsuC2I | CCSGG | 2 cut(s) | 182, 259 |
| AsuHPI | GGTGA | 1 cut(s) | 362 |
| AvaII | GGWCC | 1 cut(s) | 270 |
| BanI | GGYRCC | 1 cut(s) | 208 |
| BbvCI | CCTCAGC | 1 cut(s) | 117 |
| BbvI | GCAGC | 3 cut(s) | 17, 73, 343 |
| BccI | CCATC | 1 cut(s) | 281 |
| BciT130I | CCWGG | 1 cut(s) | 232 |
| BcnI | CCSGG | 2 cut(s) | 182, 259 |
| BcoDI | GTCTC | 1 cut(s) | 232 |
| BfaI | CTAG | 2 cut(s) | 146, 285 |
| BfmI | CTRYAG | 1 cut(s) | 32 |
| BisI | GCNGC | 4 cut(s) | 6, 87, 123, 332 |
| BlsI | GCNGC | 4 cut(s) | 7, 88, 124, 333 |
| Bme1390I | CCNGG | 3 cut(s) | 182, 232, 259 |
| Bme18I | GGWCC | 1 cut(s) | 270 |
| BmgT120I | GGNCC | 2 cut(s) | 234, 270 |
| BmiI | GGNNCC | 3 cut(s) | 210, 271, 304 |
| BmrFI | CCNGG | 3 cut(s) | 182, 232, 259 |
| BmrI | ACTGGG | 1 cut(s) | 190 |
| BmsI | GCATC | 1 cut(s) | 124 |
| BmuI | ACTGGG | 1 cut(s) | 190 |
| BpmI | CTGGAG | 3 cut(s) | 116, 141, 214 |
| Bpu10I | CCTNAGC | 1 cut(s) | 117 |
| BpuMI | CCSGG | 2 cut(s) | 182, 259 |
| BsaI | GGTCTC | 1 cut(s) | 232 |
| BsaJI | CCNNGG | 3 cut(s) | 9, 222, 231 |
| BsaWI | WCCGGW | 1 cut(s) | 205 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 97, 164, 198, 223 |
| Bse1I | ACTGG | 3 cut(s) | 158, 196, 217 |
| BseBI | CCWGG | 1 cut(s) | 232 |
| BseDI | CCNNGG | 3 cut(s) | 9, 222, 231 |
| BseGI | GGATG | 1 cut(s) | 139 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 97, 164, 198, 223 |
| BseMII | CTCAG | 1 cut(s) | 108 |
| BseNI | ACTGG | 3 cut(s) | 158, 196, 217 |
| BsePI | GCGCGC | 1 cut(s) | 327 |
| BseRI | GAGGAG | 1 cut(s) | 121 |
| BseX3I | CGGCCG | 1 cut(s) | 260 |
| BseXI | GCAGC | 3 cut(s) | 17, 73, 343 |
| BseYI | CCCAGC | 1 cut(s) | 90 |
| Bsh1236I | CGCG | 1 cut(s) | 329 |
| Bsh1285I | CGRYCG | 1 cut(s) | 263 |
| BshFI | GGCC | 3 cut(s) | 122, 236, 262 |
| BshNI | GGYRCC | 1 cut(s) | 208 |
| BsiEI | CGRYCG | 1 cut(s) | 263 |
| BsiSI | CCGG | 4 cut(s) | 182, 206, 259, 263 |
| BslFI | GGGAC | 1 cut(s) | 283 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 97, 164, 198, 223 |
| BsmAI | GTCTC | 1 cut(s) | 232 |
| BsmFI | GGGAC | 1 cut(s) | 283 |
| BsnI | GGCC | 3 cut(s) | 122, 236, 262 |
| Bso31I | GGTCTC | 1 cut(s) | 232 |
| Bsp143I | GATC | 2 cut(s) | 250, 342 |
| BspACI | CCGC | 6 cut(s) | 101, 111, 123, 185, 338, 360 |
| BspANI | GGCC | 3 cut(s) | 122, 236, 262 |
| BspCNI | CTCAG | 1 cut(s) | 109 |
| BspFNI | CGCG | 1 cut(s) | 329 |
| BspHI | TCATGA | 1 cut(s) | 276 |
| BspLI | GGNNCC | 3 cut(s) | 210, 271, 304 |
| BspT107I | GGYRCC | 1 cut(s) | 208 |
| BspTNI | GGTCTC | 1 cut(s) | 232 |
| BsrBI | CCGCTC | 1 cut(s) | 111 |
| BsrI | ACTGG | 3 cut(s) | 158, 196, 217 |
| BssECI | CCNNGG | 3 cut(s) | 9, 222, 231 |
| BssHII | GCGCGC | 1 cut(s) | 327 |
| BssMI | GATC | 2 cut(s) | 250, 342 |
| BssT1I | CCWWGG | 1 cut(s) | 9 |
| Bst2UI | CCWGG | 1 cut(s) | 232 |
| BstC8I | GCNNGC | 2 cut(s) | 151, 329 |
| BstDEI | CTNAG | 1 cut(s) | 117 |
| BstF5I | GGATG | 1 cut(s) | 139 |
| BstFNI | CGCG | 1 cut(s) | 329 |
| BstHHI | GCGC | 4 cut(s) | 155, 298, 329, 331 |
| BstKTI | GATC | 2 cut(s) | 253, 345 |
| BstMAI | GTCTC | 1 cut(s) | 232 |
| BstMBI | GATC | 2 cut(s) | 250, 342 |
| BstMCI | CGRYCG | 1 cut(s) | 263 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 122, 337 |
| BstNI | CCWGG | 1 cut(s) | 232 |
| BstSCI | CCNGG | 3 cut(s) | 180, 230, 257 |
| BstSFI | CTRYAG | 1 cut(s) | 32 |
| BstUI | CGCG | 1 cut(s) | 329 |
| BstV1I | GCAGC | 3 cut(s) | 17, 73, 343 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 244 |
| BstZI | CGGCCG | 1 cut(s) | 260 |
| BsuRI | GGCC | 3 cut(s) | 122, 236, 262 |
| BtsCI | GGATG | 1 cut(s) | 139 |
| BtsIMutI | CAGTG | 1 cut(s) | 203 |
| Cac8I | GCNNGC | 2 cut(s) | 151, 329 |
| CciI | TCATGA | 1 cut(s) | 276 |
| CfoI | GCGC | 4 cut(s) | 155, 298, 329, 331 |
| Cfr13I | GGNCC | 2 cut(s) | 234, 270 |
| Csp6I | GTAC | 1 cut(s) | 255 |
| CviAII | CATG | 2 cut(s) | 277, 299 |
| CviQI | GTAC | 1 cut(s) | 255 |
| DdeI | CTNAG | 1 cut(s) | 117 |
| DpnI | GATC | 2 cut(s) | 252, 344 |
| DpnII | GATC | 2 cut(s) | 250, 342 |
| EaeI | YGGCCR | 1 cut(s) | 260 |
| EagI | CGGCCG | 1 cut(s) | 260 |
| EciI | GGCGGA | 2 cut(s) | 116, 200 |
| EclXI | CGGCCG | 1 cut(s) | 260 |
| Eco130I | CCWWGG | 1 cut(s) | 9 |
| Eco31I | GGTCTC | 1 cut(s) | 232 |
| Eco47I | GGWCC | 1 cut(s) | 270 |
| Eco52I | CGGCCG | 1 cut(s) | 260 |
| EcoRII | CCWGG | 1 cut(s) | 230 |
| EcoT14I | CCWWGG | 1 cut(s) | 9 |
| ErhI | CCWWGG | 1 cut(s) | 9 |
| FaeI | CATG | 2 cut(s) | 280, 302 |
| FaiI | YATR | 3 cut(s) | 278, 300, 323 |
| FaqI | GGGAC | 1 cut(s) | 283 |
| FatI | CATG | 2 cut(s) | 276, 298 |
| Fnu4HI | GCNGC | 4 cut(s) | 6, 87, 123, 332 |
| FokI | GGATG | 1 cut(s) | 146 |
| Fsp4HI | GCNGC | 4 cut(s) | 6, 87, 123, 332 |
| FspBI | CTAG | 2 cut(s) | 146, 285 |
| FspI | TGCGCA | 1 cut(s) | 297 |
| GlaI | GCGC | 4 cut(s) | 154, 297, 328, 330 |
| GluI | GCNGC | 4 cut(s) | 6, 87, 123, 332 |
| GsaI | CCCAGC | 1 cut(s) | 94 |
| GsuI | CTGGAG | 3 cut(s) | 116, 141, 214 |
| HaeIII | GGCC | 3 cut(s) | 122, 236, 262 |
| HapII | CCGG | 4 cut(s) | 182, 206, 259, 263 |
| HhaI | GCGC | 4 cut(s) | 155, 298, 329, 331 |
| Hin1II | CATG | 2 cut(s) | 280, 302 |
| Hin6I | GCGC | 4 cut(s) | 153, 296, 327, 329 |
| HinP1I | GCGC | 4 cut(s) | 153, 296, 327, 329 |
| HinfI | GANTC | 2 cut(s) | 41, 202 |
| HpaII | CCGG | 4 cut(s) | 182, 206, 259, 263 |
| HphI | GGTGA | 1 cut(s) | 362 |
| Hpy166II | GTNNAC | 1 cut(s) | 201 |
| Hpy188I | TCNGA | 1 cut(s) | 223 |
| Hpy188III | TCNNGA | 1 cut(s) | 277 |
| Hpy8I | GTNNAC | 1 cut(s) | 201 |
| Hpy99I | CGWCG | 1 cut(s) | 62 |
| HpyAV | CCTTC | 1 cut(s) | 148 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 122, 337 |
| HpyF3I | CTNAG | 1 cut(s) | 117 |
| Hsp92II | CATG | 2 cut(s) | 280, 302 |
| HspAI | GCGC | 4 cut(s) | 153, 296, 327, 329 |
| Kzo9I | GATC | 2 cut(s) | 250, 342 |
| LmnI | GCTCC | 3 cut(s) | 108, 160, 308 |
| Lsp1109I | GCAGC | 3 cut(s) | 17, 73, 343 |
| LweI | GCATC | 1 cut(s) | 124 |
| MaeI | CTAG | 2 cut(s) | 146, 285 |
| MalI | GATC | 2 cut(s) | 252, 344 |
| MbiI | CCGCTC | 1 cut(s) | 111 |
| MboI | GATC | 2 cut(s) | 250, 342 |
| MlyI | GAGTC | 2 cut(s) | 35, 196 |
| MmeI | TCCRAC | 1 cut(s) | 330 |
| MnlI | CCTC | 8 cut(s) | 55, 70, 91, 99, 112, 202, 217, 340 |
| MseI | TTAA | 1 cut(s) | 15 |
| MspA1I | CMGCKG | 1 cut(s) | 94 |
| MspI | CCGG | 4 cut(s) | 182, 206, 259, 263 |
| MspR9I | CCNGG | 3 cut(s) | 182, 232, 259 |
| MvaI | CCWGG | 1 cut(s) | 232 |
| MvnI | CGCG | 1 cut(s) | 329 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 122, 337 |
| NciI | CCSGG | 2 cut(s) | 182, 259 |
| NdeII | GATC | 2 cut(s) | 250, 342 |
| NlaIII | CATG | 2 cut(s) | 280, 302 |
| NlaIV | GGNNCC | 3 cut(s) | 210, 271, 304 |
| NsbI | TGCGCA | 1 cut(s) | 297 |
| PagI | TCATGA | 1 cut(s) | 276 |
| PauI | GCGCGC | 1 cut(s) | 327 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 54 |
| PflFI | GACNNNGTC | 1 cut(s) | 44 |
| PkrI | GCNGC | 4 cut(s) | 7, 88, 124, 333 |
| PleI | GAGTC | 2 cut(s) | 35, 196 |
| PpsI | GAGTC | 2 cut(s) | 35, 196 |
| Psp6I | CCWGG | 1 cut(s) | 230 |
| PspFI | CCCAGC | 1 cut(s) | 90 |
| PspGI | CCWGG | 1 cut(s) | 230 |
| PspN4I | GGNNCC | 3 cut(s) | 210, 271, 304 |
| PspPI | GGNCC | 2 cut(s) | 234, 270 |
| PsyI | GACNNNGTC | 1 cut(s) | 44 |
| PteI | GCGCGC | 1 cut(s) | 327 |
| PvuII | CAGCTG | 1 cut(s) | 94 |
| RsaI | GTAC | 1 cut(s) | 256 |
| RsaNI | GTAC | 1 cut(s) | 255 |
| SaqAI | TTAA | 1 cut(s) | 15 |
| SatI | GCNGC | 4 cut(s) | 6, 87, 123, 332 |
| Sau3AI | GATC | 2 cut(s) | 250, 342 |
| Sau96I | GGNCC | 2 cut(s) | 234, 270 |
| SchI | GAGTC | 2 cut(s) | 35, 196 |
| ScrFI | CCNGG | 3 cut(s) | 182, 232, 259 |
| SetI | ASST | 6 cut(s) | 15, 66, 96, 147, 151, 228 |
| SfaNI | GCATC | 1 cut(s) | 124 |
| SfcI | CTRYAG | 1 cut(s) | 32 |
| SinI | GGWCC | 1 cut(s) | 270 |
| SsiI | CCGC | 6 cut(s) | 101, 111, 123, 185, 338, 360 |
| SspI | AATATT | 1 cut(s) | 241 |
| SspMI | CTAG | 2 cut(s) | 146, 285 |
| StyD4I | CCNGG | 3 cut(s) | 180, 230, 257 |
| StyI | CCWWGG | 1 cut(s) | 9 |
| TaqI | TCGA | 2 cut(s) | 60, 345 |
| TauI | GCSGC | 1 cut(s) | 125 |
| Tru1I | TTAA | 1 cut(s) | 15 |
| Tru9I | TTAA | 1 cut(s) | 15 |
| TscAI | CASTG | 1 cut(s) | 203 |
| TseI | GCWGC | 3 cut(s) | 5, 86, 331 |
| TspGWI | ACGGA | 1 cut(s) | 46 |
| TspRI | CASTG | 1 cut(s) | 203 |
| Tth111I | GACNNNGTC | 1 cut(s) | 44 |
| VpaK11BI | GGWCC | 1 cut(s) | 270 |
| XspI | CTAG | 2 cut(s) | 146, 285 |