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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 79 |
| AccB1I | GGYRCC | 1 cut(s) | 345 |
| AccBSI | CCGCTC | 2 cut(s) | 148, 343 |
| AciI | CCGC | 9 cut(s) | 75, 117, 148, 189, 311, 332, 343, 372, 384 |
| AcsI | RAATTY | 1 cut(s) | 362 |
| AcyI | GRCGYC | 1 cut(s) | 346 |
| AfaI | GTAC | 1 cut(s) | 236 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 61, 355, 466 |
| AgsI | TTSAA | 1 cut(s) | 213 |
| AjiI | CACGTC | 1 cut(s) | 415 |
| AjnI | CCWGG | 1 cut(s) | 437 |
| AluBI | AGCT | 4 cut(s) | 175, 240, 307, 391 |
| AluI | AGCT | 4 cut(s) | 175, 240, 307, 391 |
| Alw26I | GTCTC | 3 cut(s) | 13, 299, 308 |
| AoxI | GGCC | 1 cut(s) | 51 |
| ApeKI | GCWGC | 2 cut(s) | 7, 391 |
| ApoI | RAATTY | 1 cut(s) | 362 |
| AspLEI | GCGC | 2 cut(s) | 348, 409 |
| AspS9I | GGNCC | 2 cut(s) | 30, 52 |
| AsuHPI | GGTGA | 1 cut(s) | 76 |
| AvaII | GGWCC | 1 cut(s) | 30 |
| BanI | GGYRCC | 1 cut(s) | 345 |
| BbvI | GCAGC | 2 cut(s) | 19, 378 |
| BccI | CCATC | 1 cut(s) | 271 |
| BceAI | ACGGC | 2 cut(s) | 217, 386 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 95, 129 |
| BciT130I | CCWGG | 1 cut(s) | 439 |
| BclI | TGATCA | 1 cut(s) | 223 |
| BcoDI | GTCTC | 3 cut(s) | 13, 299, 308 |
| BfaI | CTAG | 2 cut(s) | 78, 443 |
| BfoI | RGCGCY | 1 cut(s) | 349 |
| BisI | GCNGC | 6 cut(s) | 8, 117, 344, 372, 385, 392 |
| BlsI | GCNGC | 6 cut(s) | 9, 118, 345, 373, 386, 393 |
| Bme1390I | CCNGG | 1 cut(s) | 439 |
| Bme18I | GGWCC | 1 cut(s) | 30 |
| BmgBI | CACGTC | 1 cut(s) | 415 |
| BmgT120I | GGNCC | 2 cut(s) | 30, 52 |
| BmiI | GGNNCC | 3 cut(s) | 31, 54, 347 |
| BmrFI | CCNGG | 1 cut(s) | 439 |
| BmsI | GCATC | 3 cut(s) | 325, 358, 367 |
| BpmI | CTGGAG | 4 cut(s) | 19, 215, 281, 421 |
| Bpu10I | CCTNAGC | 1 cut(s) | 144 |
| BsaHI | GRCGYC | 1 cut(s) | 346 |
| BsaI | GGTCTC | 1 cut(s) | 299 |
| BsaJI | CCNNGG | 1 cut(s) | 354 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 419, 449 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 61, 355, 466 |
| BseBI | CCWGG | 1 cut(s) | 439 |
| BseDI | CCNNGG | 1 cut(s) | 354 |
| BseGI | GGATG | 1 cut(s) | 340 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 61, 355, 466 |
| BseMII | CTCAG | 1 cut(s) | 135 |
| BseRI | GAGGAG | 1 cut(s) | 296 |
| BseXI | GCAGC | 2 cut(s) | 19, 378 |
| BsgI | GTGCAG | 1 cut(s) | 110 |
| BshFI | GGCC | 1 cut(s) | 53 |
| BshNI | GGYRCC | 1 cut(s) | 345 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 61, 355, 466 |
| BsmAI | GTCTC | 3 cut(s) | 13, 299, 308 |
| BsnI | GGCC | 1 cut(s) | 53 |
| Bso31I | GGTCTC | 1 cut(s) | 299 |
| Bsp143I | GATC | 2 cut(s) | 223, 285 |
| BspACI | CCGC | 9 cut(s) | 75, 117, 148, 189, 311, 332, 343, 372, 384 |
| BspANI | GGCC | 1 cut(s) | 53 |
| BspCNI | CTCAG | 1 cut(s) | 136 |
| BspLI | GGNNCC | 3 cut(s) | 31, 54, 347 |
| BspT107I | GGYRCC | 1 cut(s) | 345 |
| BspTNI | GGTCTC | 1 cut(s) | 299 |
| BsrBI | CCGCTC | 2 cut(s) | 148, 343 |
| BssECI | CCNNGG | 1 cut(s) | 354 |
| BssMI | GATC | 2 cut(s) | 223, 285 |
| BssNI | GRCGYC | 1 cut(s) | 346 |
| BssT1I | CCWWGG | 1 cut(s) | 354 |
| Bst2UI | CCWGG | 1 cut(s) | 439 |
| Bst4CI | ACNGT | 2 cut(s) | 70, 326 |
| BstACI | GRCGYC | 1 cut(s) | 346 |
| BstC8I | GCNNGC | 5 cut(s) | 51, 191, 309, 382, 389 |
| BstDEI | CTNAG | 2 cut(s) | 144, 318 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 353, 464 |
| BstF5I | GGATG | 1 cut(s) | 340 |
| BstH2I | RGCGCY | 1 cut(s) | 349 |
| BstHHI | GCGC | 2 cut(s) | 348, 409 |
| BstKTI | GATC | 2 cut(s) | 226, 288 |
| BstMAI | GTCTC | 3 cut(s) | 13, 299, 308 |
| BstMBI | GATC | 2 cut(s) | 223, 285 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 122, 377 |
| BstNI | CCWGG | 1 cut(s) | 439 |
| BstSCI | CCNGG | 1 cut(s) | 437 |
| BstV1I | GCAGC | 2 cut(s) | 19, 378 |
| BsuRI | GGCC | 1 cut(s) | 53 |
| BtrI | CACGTC | 1 cut(s) | 415 |
| BtsCI | GGATG | 1 cut(s) | 340 |
| Cac8I | GCNNGC | 5 cut(s) | 51, 191, 309, 382, 389 |
| CfoI | GCGC | 2 cut(s) | 348, 409 |
| Cfr13I | GGNCC | 2 cut(s) | 30, 52 |
| Csp6I | GTAC | 1 cut(s) | 235 |
| CviAII | CATG | 1 cut(s) | 272 |
| CviQI | GTAC | 1 cut(s) | 235 |
| DdeI | CTNAG | 2 cut(s) | 144, 318 |
| DinI | GGCGCC | 1 cut(s) | 347 |
| DpnI | GATC | 2 cut(s) | 225, 287 |
| DpnII | GATC | 2 cut(s) | 223, 285 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 79 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 79 |
| EciI | GGCGGA | 2 cut(s) | 326, 347 |
| Eco130I | CCWWGG | 1 cut(s) | 354 |
| Eco31I | GGTCTC | 1 cut(s) | 299 |
| Eco47I | GGWCC | 1 cut(s) | 30 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 353, 464 |
| EcoO109I | RGGNCCY | 2 cut(s) | 30, 52 |
| EcoRII | CCWGG | 1 cut(s) | 437 |
| EcoT14I | CCWWGG | 1 cut(s) | 354 |
| EgeI | GGCGCC | 1 cut(s) | 347 |
| EheI | GGCGCC | 1 cut(s) | 347 |
| ErhI | CCWWGG | 1 cut(s) | 354 |
| FaeI | CATG | 1 cut(s) | 275 |
| FaiI | YATR | 4 cut(s) | 121, 123, 273, 455 |
| FatI | CATG | 1 cut(s) | 271 |
| FauI | CCCGC | 2 cut(s) | 141, 182 |
| FauNDI | CATATG | 1 cut(s) | 121 |
| FbaI | TGATCA | 1 cut(s) | 223 |
| Fnu4HI | GCNGC | 6 cut(s) | 8, 117, 344, 372, 385, 392 |
| FokI | GGATG | 1 cut(s) | 347 |
| Fsp4HI | GCNGC | 6 cut(s) | 8, 117, 344, 372, 385, 392 |
| FspBI | CTAG | 2 cut(s) | 78, 443 |
| GlaI | GCGC | 2 cut(s) | 347, 408 |
| GluI | GCNGC | 6 cut(s) | 8, 117, 344, 372, 385, 392 |
| GsuI | CTGGAG | 4 cut(s) | 19, 215, 281, 421 |
| HaeII | RGCGCY | 1 cut(s) | 349 |
| HaeIII | GGCC | 1 cut(s) | 53 |
| HhaI | GCGC | 2 cut(s) | 348, 409 |
| Hin1I | GRCGYC | 1 cut(s) | 346 |
| Hin1II | CATG | 1 cut(s) | 275 |
| Hin6I | GCGC | 2 cut(s) | 346, 407 |
| HinP1I | GCGC | 2 cut(s) | 346, 407 |
| HinfI | GANTC | 2 cut(s) | 107, 201 |
| HphI | GGTGA | 1 cut(s) | 76 |
| Hpy188I | TCNGA | 2 cut(s) | 85, 244 |
| Hpy188III | TCNNGA | 1 cut(s) | 298 |
| HpyAV | CCTTC | 3 cut(s) | 39, 55, 460 |
| HpyCH4III | ACNGT | 2 cut(s) | 70, 326 |
| HpyCH4IV | ACGT | 1 cut(s) | 414 |
| HpyCH4V | TGCA | 3 cut(s) | 7, 91, 338 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 122, 377 |
| HpyF3I | CTNAG | 2 cut(s) | 144, 318 |
| HpySE526I | ACGT | 1 cut(s) | 414 |
| Hsp92I | GRCGYC | 1 cut(s) | 346 |
| Hsp92II | CATG | 1 cut(s) | 275 |
| HspAI | GCGC | 2 cut(s) | 346, 407 |
| KasI | GGCGCC | 1 cut(s) | 345 |
| Ksp22I | TGATCA | 1 cut(s) | 223 |
| Kzo9I | GATC | 2 cut(s) | 223, 285 |
| LmnI | GCTCC | 2 cut(s) | 304, 418 |
| Lsp1109I | GCAGC | 2 cut(s) | 19, 378 |
| LweI | GCATC | 3 cut(s) | 325, 358, 367 |
| MaeI | CTAG | 2 cut(s) | 78, 443 |
| MaeII | ACGT | 1 cut(s) | 414 |
| MaeIII | GTNAC | 2 cut(s) | 64, 70 |
| MalI | GATC | 2 cut(s) | 225, 287 |
| MbiI | CCGCTC | 2 cut(s) | 148, 343 |
| MboI | GATC | 2 cut(s) | 223, 285 |
| MboII | GAAGA | 2 cut(s) | 54, 151 |
| MluCI | AATT | 2 cut(s) | 128, 362 |
| Mly113I | GGCGCC | 1 cut(s) | 346 |
| MlyI | GAGTC | 1 cut(s) | 101 |
| MmeI | TCCRAC | 1 cut(s) | 63 |
| MspA1I | CMGCKG | 1 cut(s) | 374 |
| MspR9I | CCNGG | 1 cut(s) | 439 |
| MvaI | CCWGG | 1 cut(s) | 439 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 122, 377 |
| NarI | GGCGCC | 1 cut(s) | 346 |
| NdeI | CATATG | 1 cut(s) | 121 |
| NdeII | GATC | 2 cut(s) | 223, 285 |
| NlaIII | CATG | 1 cut(s) | 275 |
| NlaIV | GGNNCC | 3 cut(s) | 31, 54, 347 |
| NmuCI | GTSAC | 2 cut(s) | 64, 70 |
| PfeI | GAWTC | 1 cut(s) | 201 |
| PkrI | GCNGC | 6 cut(s) | 9, 118, 345, 373, 386, 393 |
| PleI | GAGTC | 1 cut(s) | 101 |
| PluTI | GGCGCC | 1 cut(s) | 349 |
| PpsI | GAGTC | 1 cut(s) | 101 |
| PpuMI | RGGWCCY | 1 cut(s) | 30 |
| Psp5II | RGGWCCY | 1 cut(s) | 30 |
| Psp6I | CCWGG | 1 cut(s) | 437 |
| PspGI | CCWGG | 1 cut(s) | 437 |
| PspN4I | GGNNCC | 3 cut(s) | 31, 54, 347 |
| PspPI | GGNCC | 2 cut(s) | 30, 52 |
| PspPPI | RGGWCCY | 1 cut(s) | 30 |
| RsaI | GTAC | 1 cut(s) | 236 |
| RsaNI | GTAC | 1 cut(s) | 235 |
| SatI | GCNGC | 6 cut(s) | 8, 117, 344, 372, 385, 392 |
| Sau3AI | GATC | 2 cut(s) | 223, 285 |
| Sau96I | GGNCC | 2 cut(s) | 30, 52 |
| SchI | GAGTC | 1 cut(s) | 101 |
| ScrFI | CCNGG | 1 cut(s) | 439 |
| SfaNI | GCATC | 3 cut(s) | 325, 358, 367 |
| SfoI | GGCGCC | 1 cut(s) | 347 |
| SinI | GGWCC | 1 cut(s) | 30 |
| Sse9I | AATT | 2 cut(s) | 128, 362 |
| SsiI | CCGC | 9 cut(s) | 75, 117, 148, 189, 311, 332, 343, 372, 384 |
| SspDI | GGCGCC | 1 cut(s) | 345 |
| SspMI | CTAG | 2 cut(s) | 78, 443 |
| StyD4I | CCNGG | 1 cut(s) | 437 |
| StyI | CCWWGG | 1 cut(s) | 354 |
| TaaI | ACNGT | 2 cut(s) | 70, 326 |
| TaiI | ACGT | 1 cut(s) | 417 |
| TaqI | TCGA | 4 cut(s) | 59, 105, 137, 288 |
| TasI | AATT | 2 cut(s) | 128, 362 |
| TauI | GCSGC | 4 cut(s) | 119, 346, 374, 387 |
| TfiI | GAWTC | 1 cut(s) | 201 |
| TseFI | GTSAC | 2 cut(s) | 64, 70 |
| TseI | GCWGC | 2 cut(s) | 7, 391 |
| Tsp45I | GTSAC | 2 cut(s) | 64, 70 |
| TspGWI | ACGGA | 1 cut(s) | 250 |
| VpaK11BI | GGWCC | 1 cut(s) | 30 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 353, 464 |
| XapI | RAATTY | 1 cut(s) | 362 |
| XspI | CTAG | 2 cut(s) | 78, 443 |