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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 517 |
| AccB1I | GGYRCC | 1 cut(s) | 517 |
| AccBSI | CCGCTC | 1 cut(s) | 222 |
| AccII | CGCG | 1 cut(s) | 104 |
| AclI | AACGTT | 1 cut(s) | 255 |
| AcoI | YGGCCR | 1 cut(s) | 116 |
| AcyI | GRCGYC | 1 cut(s) | 397 |
| AfaI | GTAC | 1 cut(s) | 519 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 114, 340, 465 |
| AflIII | ACRYGT | 1 cut(s) | 122 |
| AgsI | TTSAA | 2 cut(s) | 72, 235 |
| Ama87I | CYCGRG | 5 cut(s) | 217, 340, 358, 419, 500 |
| AoxI | GGCC | 1 cut(s) | 116 |
| ApeKI | GCWGC | 2 cut(s) | 157, 535 |
| AseI | ATTAAT | 1 cut(s) | 180 |
| Asp718I | GGTACC | 1 cut(s) | 517 |
| AspLEI | GCGC | 2 cut(s) | 33, 288 |
| AspS9I | GGNCC | 2 cut(s) | 504, 540 |
| AsuC2I | CCSGG | 3 cut(s) | 341, 342, 593 |
| AsuHPI | GGTGA | 3 cut(s) | 166, 236, 289 |
| AsuNHI | GCTAGC | 2 cut(s) | 200, 430 |
| AvaI | CYCGRG | 5 cut(s) | 217, 340, 358, 419, 500 |
| AvaII | GGWCC | 2 cut(s) | 504, 540 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 509, 542 |
| BalI | TGGCCA | 1 cut(s) | 118 |
| BanI | GGYRCC | 1 cut(s) | 517 |
| BbvI | GCAGC | 2 cut(s) | 169, 547 |
| BccI | CCATC | 2 cut(s) | 190, 458 |
| BcnI | CCSGG | 3 cut(s) | 341, 342, 593 |
| BfaI | CTAG | 5 cut(s) | 201, 312, 383, 431, 450 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 593 |
| BglII | AGATCT | 1 cut(s) | 213 |
| BisI | GCNGC | 3 cut(s) | 158, 478, 536 |
| BlsI | GCNGC | 3 cut(s) | 159, 479, 537 |
| Bme1390I | CCNGG | 3 cut(s) | 341, 342, 593 |
| Bme18I | GGWCC | 2 cut(s) | 504, 540 |
| BmeT110I | CYCGRG | 5 cut(s) | 217, 340, 358, 419, 500 |
| BmgT120I | GGNCC | 2 cut(s) | 504, 540 |
| BmiI | GGNNCC | 4 cut(s) | 307, 457, 505, 519 |
| BmrFI | CCNGG | 3 cut(s) | 341, 342, 593 |
| BmsI | GCATC | 2 cut(s) | 177, 561 |
| BmtI | GCTAGC | 2 cut(s) | 204, 434 |
| BpuMI | CCSGG | 3 cut(s) | 341, 342, 593 |
| BsaHI | GRCGYC | 1 cut(s) | 397 |
| BsaJI | CCNNGG | 5 cut(s) | 339, 340, 352, 521, 591 |
| BsaWI | WCCGGW | 1 cut(s) | 16 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 479, 509 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 114, 340, 465 |
| BseDI | CCNNGG | 5 cut(s) | 339, 340, 352, 521, 591 |
| BseGI | GGATG | 1 cut(s) | 168 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 114, 340, 465 |
| BseRI | GAGGAG | 3 cut(s) | 38, 437, 500 |
| BseXI | GCAGC | 2 cut(s) | 169, 547 |
| Bsh1236I | CGCG | 1 cut(s) | 104 |
| Bsh1285I | CGRYCG | 3 cut(s) | 102, 372, 415 |
| BshFI | GGCC | 1 cut(s) | 118 |
| BshNI | GGYRCC | 1 cut(s) | 517 |
| BsiEI | CGRYCG | 3 cut(s) | 102, 372, 415 |
| BsiHKCI | CYCGRG | 5 cut(s) | 217, 340, 358, 419, 500 |
| BsiSI | CCGG | 4 cut(s) | 17, 303, 341, 593 |
| BslFI | GGGAC | 3 cut(s) | 21, 101, 136 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 114, 340, 465 |
| BsmFI | GGGAC | 3 cut(s) | 21, 101, 136 |
| BsnI | GGCC | 1 cut(s) | 118 |
| BsoBI | CYCGRG | 5 cut(s) | 217, 340, 358, 419, 500 |
| Bsp143I | GATC | 2 cut(s) | 213, 412 |
| Bsp19I | CCATGG | 2 cut(s) | 352, 521 |
| BspANI | GGCC | 1 cut(s) | 118 |
| BspFNI | CGCG | 1 cut(s) | 104 |
| BspLI | GGNNCC | 4 cut(s) | 307, 457, 505, 519 |
| BspOI | GCTAGC | 2 cut(s) | 204, 434 |
| BspT107I | GGYRCC | 1 cut(s) | 517 |
| BsrBI | CCGCTC | 1 cut(s) | 222 |
| BssECI | CCNNGG | 5 cut(s) | 339, 340, 352, 521, 591 |
| BssMI | GATC | 2 cut(s) | 213, 412 |
| BssNI | GRCGYC | 1 cut(s) | 397 |
| BssT1I | CCWWGG | 2 cut(s) | 352, 521 |
| BstACI | GRCGYC | 1 cut(s) | 397 |
| BstC8I | GCNNGC | 5 cut(s) | 202, 401, 405, 409, 432 |
| BstDSI | CCRYGG | 2 cut(s) | 352, 521 |
| BstF5I | GGATG | 1 cut(s) | 168 |
| BstFNI | CGCG | 1 cut(s) | 104 |
| BstHHI | GCGC | 2 cut(s) | 33, 288 |
| BstKTI | GATC | 2 cut(s) | 216, 415 |
| BstMBI | GATC | 2 cut(s) | 213, 412 |
| BstMCI | CGRYCG | 3 cut(s) | 102, 372, 415 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 308, 450, 593 |
| BstNSI | RCATGY | 1 cut(s) | 126 |
| BstSCI | CCNGG | 3 cut(s) | 339, 340, 591 |
| BstUI | CGCG | 1 cut(s) | 104 |
| BstV1I | GCAGC | 2 cut(s) | 169, 547 |
| BstX2I | RGATCY | 1 cut(s) | 213 |
| BstYI | RGATCY | 1 cut(s) | 213 |
| BsuRI | GGCC | 1 cut(s) | 118 |
| BtgI | CCRYGG | 2 cut(s) | 352, 521 |
| BtsCI | GGATG | 1 cut(s) | 168 |
| Cac8I | GCNNGC | 5 cut(s) | 202, 401, 405, 409, 432 |
| CfoI | GCGC | 2 cut(s) | 33, 288 |
| Cfr13I | GGNCC | 2 cut(s) | 504, 540 |
| Cfr9I | CCCGGG | 1 cut(s) | 340 |
| CseI | GACGC | 5 cut(s) | 93, 98, 193, 405, 433 |
| Csp6I | GTAC | 1 cut(s) | 518 |
| CviAII | CATG | 3 cut(s) | 123, 353, 522 |
| CviJI | RGCY | 6 cut(s) | 118, 200, 351, 357, 418, 430 |
| CviKI_1 | RGCY | 6 cut(s) | 118, 200, 351, 357, 418, 430 |
| CviQI | GTAC | 1 cut(s) | 518 |
| DpnI | GATC | 2 cut(s) | 215, 414 |
| DpnII | GATC | 2 cut(s) | 213, 412 |
| EaeI | YGGCCR | 1 cut(s) | 116 |
| EciI | GGCGGA | 1 cut(s) | 448 |
| Eco130I | CCWWGG | 2 cut(s) | 352, 521 |
| Eco47I | GGWCC | 2 cut(s) | 504, 540 |
| Eco88I | CYCGRG | 5 cut(s) | 217, 340, 358, 419, 500 |
| EcoO109I | RGGNCCY | 1 cut(s) | 504 |
| EcoT14I | CCWWGG | 2 cut(s) | 352, 521 |
| ErhI | CCWWGG | 2 cut(s) | 352, 521 |
| FaeI | CATG | 3 cut(s) | 126, 356, 525 |
| FaiI | YATR | 6 cut(s) | 124, 336, 354, 512, 523, 570 |
| FaqI | GGGAC | 3 cut(s) | 21, 101, 136 |
| FatI | CATG | 3 cut(s) | 122, 352, 521 |
| FauI | CCCGC | 6 cut(s) | 162, 173, 408, 412, 473, 592 |
| Fnu4HI | GCNGC | 3 cut(s) | 158, 478, 536 |
| FokI | GGATG | 1 cut(s) | 155 |
| Fsp4HI | GCNGC | 3 cut(s) | 158, 478, 536 |
| FspBI | CTAG | 5 cut(s) | 201, 312, 383, 431, 450 |
| GlaI | GCGC | 2 cut(s) | 32, 287 |
| GluI | GCNGC | 3 cut(s) | 158, 478, 536 |
| HaeIII | GGCC | 1 cut(s) | 118 |
| HapII | CCGG | 4 cut(s) | 17, 303, 341, 593 |
| HgaI | GACGC | 5 cut(s) | 93, 98, 193, 405, 433 |
| HhaI | GCGC | 2 cut(s) | 33, 288 |
| Hin1I | GRCGYC | 1 cut(s) | 397 |
| Hin1II | CATG | 3 cut(s) | 126, 356, 525 |
| Hin6I | GCGC | 2 cut(s) | 31, 286 |
| HinP1I | GCGC | 2 cut(s) | 31, 286 |
| HinfI | GANTC | 4 cut(s) | 43, 53, 278, 494 |
| HpaII | CCGG | 4 cut(s) | 17, 303, 341, 593 |
| HphI | GGTGA | 3 cut(s) | 166, 236, 289 |
| Hpy166II | GTNNAC | 1 cut(s) | 563 |
| Hpy188I | TCNGA | 1 cut(s) | 109 |
| Hpy188III | TCNNGA | 1 cut(s) | 217 |
| Hpy8I | GTNNAC | 1 cut(s) | 563 |
| Hpy99I | CGWCG | 2 cut(s) | 209, 245 |
| HpyAV | CCTTC | 1 cut(s) | 517 |
| HpyCH4IV | ACGT | 2 cut(s) | 149, 255 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 308, 450, 593 |
| HpySE526I | ACGT | 2 cut(s) | 149, 255 |
| Hsp92I | GRCGYC | 1 cut(s) | 397 |
| Hsp92II | CATG | 3 cut(s) | 126, 356, 525 |
| HspAI | GCGC | 2 cut(s) | 31, 286 |
| KpnI | GGTACC | 1 cut(s) | 521 |
| Kzo9I | GATC | 2 cut(s) | 213, 412 |
| LpnPI | CCDG | 3 cut(s) | 30, 316, 354 |
| Lsp1109I | GCAGC | 2 cut(s) | 169, 547 |
| LweI | GCATC | 2 cut(s) | 177, 561 |
| MaeI | CTAG | 5 cut(s) | 201, 312, 383, 431, 450 |
| MaeII | ACGT | 2 cut(s) | 149, 255 |
| MaeIII | GTNAC | 3 cut(s) | 76, 445, 495 |
| MalI | GATC | 2 cut(s) | 215, 414 |
| MbiI | CCGCTC | 1 cut(s) | 222 |
| MboI | GATC | 2 cut(s) | 213, 412 |
| MboII | GAAGA | 1 cut(s) | 87 |
| MflI | RGATCY | 1 cut(s) | 213 |
| MlsI | TGGCCA | 1 cut(s) | 118 |
| MluNI | TGGCCA | 1 cut(s) | 118 |
| MlyI | GAGTC | 1 cut(s) | 503 |
| MmeI | TCCRAC | 1 cut(s) | 132 |
| Mox20I | TGGCCA | 1 cut(s) | 118 |
| MscI | TGGCCA | 1 cut(s) | 118 |
| MseI | TTAA | 2 cut(s) | 35, 180 |
| Msp20I | TGGCCA | 1 cut(s) | 118 |
| MspA1I | CMGCKG | 1 cut(s) | 538 |
| MspI | CCGG | 4 cut(s) | 17, 303, 341, 593 |
| MspR9I | CCNGG | 3 cut(s) | 341, 342, 593 |
| MvnI | CGCG | 1 cut(s) | 104 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 308, 450, 593 |
| NciI | CCSGG | 3 cut(s) | 341, 342, 593 |
| NcoI | CCATGG | 2 cut(s) | 352, 521 |
| NdeII | GATC | 2 cut(s) | 213, 412 |
| NheI | GCTAGC | 2 cut(s) | 200, 430 |
| NlaIII | CATG | 3 cut(s) | 126, 356, 525 |
| NlaIV | GGNNCC | 4 cut(s) | 307, 457, 505, 519 |
| NmuCI | GTSAC | 2 cut(s) | 445, 495 |
| NspI | RCATGY | 1 cut(s) | 126 |
| PaeR7I | CTCGAG | 3 cut(s) | 217, 358, 419 |
| PciI | ACATGT | 1 cut(s) | 122 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 365 |
| PfeI | GAWTC | 3 cut(s) | 43, 53, 278 |
| PflFI | GACNNNGTC | 1 cut(s) | 103 |
| PkrI | GCNGC | 3 cut(s) | 159, 479, 537 |
| Ple19I | CGATCG | 1 cut(s) | 415 |
| PleI | GAGTC | 1 cut(s) | 502 |
| PpsI | GAGTC | 1 cut(s) | 502 |
| PpuMI | RGGWCCY | 1 cut(s) | 504 |
| PscI | ACATGT | 1 cut(s) | 122 |
| PshBI | ATTAAT | 1 cut(s) | 180 |
| Psp1406I | AACGTT | 1 cut(s) | 255 |
| Psp5II | RGGWCCY | 1 cut(s) | 504 |
| PspN4I | GGNNCC | 4 cut(s) | 307, 457, 505, 519 |
| PspPI | GGNCC | 2 cut(s) | 504, 540 |
| PspPPI | RGGWCCY | 1 cut(s) | 504 |
| PspXI | VCTCGAGB | 2 cut(s) | 358, 419 |
| PsuI | RGATCY | 1 cut(s) | 213 |
| PsyI | GACNNNGTC | 1 cut(s) | 103 |
| PvuI | CGATCG | 1 cut(s) | 415 |
| RsaI | GTAC | 1 cut(s) | 519 |
| RsaNI | GTAC | 1 cut(s) | 518 |
| SaqAI | TTAA | 2 cut(s) | 35, 180 |
| SatI | GCNGC | 3 cut(s) | 158, 478, 536 |
| Sau3AI | GATC | 2 cut(s) | 213, 412 |
| Sau96I | GGNCC | 2 cut(s) | 504, 540 |
| SchI | GAGTC | 1 cut(s) | 503 |
| ScrFI | CCNGG | 3 cut(s) | 341, 342, 593 |
| SetI | ASST | 9 cut(s) | 78, 134, 152, 191, 258, 297, 326, 365, 568 |
| SfaNI | GCATC | 2 cut(s) | 177, 561 |
| Sfr274I | CTCGAG | 3 cut(s) | 217, 358, 419 |
| SinI | GGWCC | 2 cut(s) | 504, 540 |
| SlaI | CTCGAG | 3 cut(s) | 217, 358, 419 |
| SmaI | CCCGGG | 1 cut(s) | 342 |
| SmlI | CTYRAG | 3 cut(s) | 217, 358, 419 |
| SmoI | CTYRAG | 3 cut(s) | 217, 358, 419 |
| SspMI | CTAG | 5 cut(s) | 201, 312, 383, 431, 450 |
| StyD4I | CCNGG | 3 cut(s) | 339, 340, 591 |
| StyI | CCWWGG | 2 cut(s) | 352, 521 |
| TaiI | ACGT | 2 cut(s) | 152, 258 |
| TaqI | TCGA | 5 cut(s) | 98, 218, 319, 359, 420 |
| TaqII | GACCGA | 1 cut(s) | 386 |
| TauI | GCSGC | 1 cut(s) | 480 |
| TfiI | GAWTC | 3 cut(s) | 43, 53, 278 |
| Tru1I | TTAA | 2 cut(s) | 35, 180 |
| Tru9I | TTAA | 2 cut(s) | 35, 180 |
| TseFI | GTSAC | 2 cut(s) | 445, 495 |
| TseI | GCWGC | 2 cut(s) | 157, 535 |
| Tsp45I | GTSAC | 2 cut(s) | 445, 495 |
| TspDTI | ATGAA | 1 cut(s) | 499 |
| TspGWI | ACGGA | 2 cut(s) | 53, 229 |
| TspMI | CCCGGG | 1 cut(s) | 340 |
| Tth111I | GACNNNGTC | 1 cut(s) | 103 |
| VpaK11BI | GGWCC | 2 cut(s) | 504, 540 |
| VspI | ATTAAT | 1 cut(s) | 180 |
| XceI | RCATGY | 1 cut(s) | 126 |
| XhoI | CTCGAG | 3 cut(s) | 217, 358, 419 |
| XmaI | CCCGGG | 1 cut(s) | 340 |
| XspI | CTAG | 5 cut(s) | 201, 312, 383, 431, 450 |